RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 IL17REQ8NFR9 667 aa25.89■■□□□ 1.74
LSM4-203ENST00000593829 NFE2L2Q16236 605 aa25.88■■□□□ 1.73
LSM4-203ENST00000593829 RTF1Q92541 710 aaKnown RBP25.88■■□□□ 1.73
LSM4-203ENST00000593829 ATG3Q9NT62 314 aa25.88■■□□□ 1.73
LSM4-203ENST00000593829 LY75O60449 1722 aa25.88■■□□□ 1.73
LSM4-203ENST00000593829 MRC1P22897 1456 aa25.87■■□□□ 1.73
LSM4-203ENST00000593829 HTATSF1O43719 755 aaKnown RBP25.87■■□□□ 1.73
LSM4-203ENST00000593829 CCDC146Q8IYE0 955 aa25.87■■□□□ 1.73
LSM4-203ENST00000593829 RUNDC1Q96C34 613 aa25.87■■□□□ 1.73
LSM4-203ENST00000593829 LRRC4BQ9NT99 713 aa25.87■■□□□ 1.73
LSM4-203ENST00000593829 CCNL1Q9UK58 526 aaPredicted RBP25.87■■□□□ 1.73
LSM4-203ENST00000593829 TEFQ10587 303 aa25.86■■□□□ 1.73
LSM4-203ENST00000593829 VIRMAQ69YN4 1812 aaKnown RBP25.85■■□□□ 1.73
LSM4-203ENST00000593829 CEMIPQ8WUJ3 1361 aa25.85■■□□□ 1.73
LSM4-203ENST00000593829 PNISRQ8TF01 805 aaKnown RBP25.84■■□□□ 1.73
LSM4-203ENST00000593829 KCNQ4P56696 695 aa25.84■■□□□ 1.73
LSM4-203ENST00000593829 MCM10Q7L590 875 aa25.83■■□□□ 1.73
LSM4-203ENST00000593829 LOC102724428A0A0B4J2F2 783 aa25.82■■□□□ 1.72
LSM4-203ENST00000593829 HMGB2P26583 209 aaKnown RBP25.82■■□□□ 1.72
LSM4-203ENST00000593829 SIK1P57059 783 aa25.82■■□□□ 1.72
LSM4-203ENST00000593829 ANO8Q9HCE9 1232 aaPredicted RBP25.82■■□□□ 1.72
LSM4-203ENST00000593829 TMPOP42166 694 aaKnown RBP25.81■■□□□ 1.72
LSM4-203ENST00000593829 DCTN1Q14203 1278 aa25.81■■□□□ 1.72
LSM4-203ENST00000593829 R3HDM1Q15032 1099 aaKnown RBP25.81■■□□□ 1.72
LSM4-203ENST00000593829 STK32BQ9NY57 414 aa25.81■■□□□ 1.72
LSM4-203ENST00000593829 RIPK4P57078 832 aa25.8■■□□□ 1.72
LSM4-203ENST00000593829 PSDA5PKW4 1024 aaPredicted RBP25.8■■□□□ 1.72
LSM4-203ENST00000593829 RBM42Q9BTD8 480 aaKnown RBP25.79■■□□□ 1.72
LSM4-203ENST00000593829 DLG5Q8TDM6 1919 aa25.79■■□□□ 1.72
LSM4-203ENST00000593829 PAPPAQ13219 1627 aa25.79■■□□□ 1.72
LSM4-203ENST00000593829 ATP6V1AP38606 617 aa25.78■■□□□ 1.72
LSM4-203ENST00000593829 SLC39A6Q13433 755 aa25.78■■□□□ 1.72
LSM4-203ENST00000593829 SLC15A2Q16348 729 aa25.78■■□□□ 1.72
LSM4-203ENST00000593829 PTCD1O75127 700 aaKnown RBP25.77■■□□□ 1.72
LSM4-203ENST00000593829 RRP7AQ9Y3A4 280 aaKnown RBP25.77■■□□□ 1.72
LSM4-203ENST00000593829 LMOD3Q0VAK6 560 aa25.76■■□□□ 1.72
LSM4-203ENST00000593829 NEUROD2Q15784 382 aa25.76■■□□□ 1.72
LSM4-203ENST00000593829 SIPA1L3O60292 1781 aaPredicted RBP25.75■■□□□ 1.71
LSM4-203ENST00000593829 AKT1S1Q96B36 256 aa25.75■■□□□ 1.71
LSM4-203ENST00000593829 ZNF827Q17R98 1081 aa25.75■■□□□ 1.71
LSM4-203ENST00000593829 TTC5Q8N0Z6 440 aa25.75■■□□□ 1.71
LSM4-203ENST00000593829 SLC4A9Q96Q91 983 aa25.75■■□□□ 1.71
LSM4-203ENST00000593829 TSHZ2Q9NRE2 1034 aa25.75■■□□□ 1.71
LSM4-203ENST00000593829 BTBD11A6QL63 1104 aa25.74■■□□□ 1.71
LSM4-203ENST00000593829 ITPK1Q13572 414 aa25.74■■□□□ 1.71
LSM4-203ENST00000593829 C5P01031 1676 aa25.73■■□□□ 1.71
LSM4-203ENST00000593829 APAF1O14727 1248 aa25.73■■□□□ 1.71
LSM4-203ENST00000593829 ZNF790Q6PG37 636 aa25.73■■□□□ 1.71
LSM4-203ENST00000593829 TAF7Q15545 349 aaPredicted RBP25.73■■□□□ 1.71
LSM4-203ENST00000593829 THUMPD2Q9BTF0 503 aaKnown RBP25.73■■□□□ 1.71
LSM4-203ENST00000593829 ZNF831Q5JPB2 1677 aa25.72■■□□□ 1.71
LSM4-203ENST00000593829 LINC00116Q8NCU8 138 aa25.71■■□□□ 1.71
LSM4-203ENST00000593829 TAF1LQ8IZX4 1826 aa25.71■■□□□ 1.71
LSM4-203ENST00000593829 CCER2I3L3R5 266 aa25.71■■□□□ 1.71
LSM4-203ENST00000593829 FAM9BQ8IZU0 186 aa25.71■■□□□ 1.71
LSM4-203ENST00000593829 TFCP2L1Q9NZI6 479 aa25.71■■□□□ 1.71
LSM4-203ENST00000593829 KCPQ6ZWJ8 1503 aa25.7■■□□□ 1.7
LSM4-203ENST00000593829 TRIM35Q9UPQ4 493 aa25.69■■□□□ 1.7
LSM4-203ENST00000593829 C4BP0C0L5 1744 aa25.68■■□□□ 1.7
LSM4-203ENST00000593829 VSIG10Q8N0Z9 540 aa25.67■■□□□ 1.7
LSM4-203ENST00000593829 ZNF496Q96IT1 587 aaPredicted RBP25.67■■□□□ 1.7
LSM4-203ENST00000593829 AK7Q96M32 723 aa25.67■■□□□ 1.7
LSM4-203ENST00000593829 UBR2Q8IWV8 1755 aa25.67■■□□□ 1.7
LSM4-203ENST00000593829 KCNQ3O43525 872 aa25.67■■□□□ 1.7
LSM4-203ENST00000593829 FMNL2Q96PY5 1086 aa25.66■■□□□ 1.7
LSM4-203ENST00000593829 MIS18AQ9NYP9 233 aa25.65■■□□□ 1.7
LSM4-203ENST00000593829 DNAJC10Q8IXB1 793 aa25.65■■□□□ 1.7
LSM4-203ENST00000593829 CICQ96RK0 1608 aaPredicted RBP25.64■■□□□ 1.7
LSM4-203ENST00000593829 HEG1Q9ULI3 1381 aa25.64■■□□□ 1.69
LSM4-203ENST00000593829 RC3H1Q5TC82 1133 aaKnown RBP25.63■■□□□ 1.69
LSM4-203ENST00000593829 PDGFDQ9GZP0 370 aaPredicted RBP25.63■■□□□ 1.69
LSM4-203ENST00000593829 TJP1Q07157 1748 aa25.63■■□□□ 1.69
LSM4-203ENST00000593829 PNPLA7Q6ZV29 1317 aa25.63■■□□□ 1.69
LSM4-203ENST00000593829 CNTNAP4Q9C0A0 1308 aa25.63■■□□□ 1.69
LSM4-203ENST00000593829 COL5A3P25940 1745 aaPredicted RBP25.62■■□□□ 1.69
LSM4-203ENST00000593829 QSER1Q2KHR3 1735 aa25.62■■□□□ 1.69
LSM4-203ENST00000593829 GNPATO15228 680 aa25.61■■□□□ 1.69
LSM4-203ENST00000593829 FLAD1Q8NFF5 587 aa25.61■■□□□ 1.69
LSM4-203ENST00000593829 BABAM1Q9NWV8 329 aa25.61■■□□□ 1.69
LSM4-203ENST00000593829 TEX13AQ9BXU3 409 aaPredicted RBP25.61■■□□□ 1.69
LSM4-203ENST00000593829 CASZ1Q86V15 1759 aa25.61■■□□□ 1.69
LSM4-203ENST00000593829 CRKLP46109 303 aaKnown RBP25.6■■□□□ 1.69
LSM4-203ENST00000593829 TSPYL4Q9UJ04 414 aa25.6■■□□□ 1.69
LSM4-203ENST00000593829 TUBGCP6Q96RT7 1819 aa25.6■■□□□ 1.69
LSM4-203ENST00000593829 CYP19A1P11511 503 aaPredicted RBP25.59■■□□□ 1.69
LSM4-203ENST00000593829 SSFA2P28290 1259 aa25.59■■□□□ 1.69
LSM4-203ENST00000593829 NCBP3Q53F19 620 aaKnown RBP25.59■■□□□ 1.69
LSM4-203ENST00000593829 SENP3-EIF4A1A0A087X0R7 540 aa25.58■■□□□ 1.69
LSM4-203ENST00000593829 STARD3NLO95772 234 aa25.58■■□□□ 1.69
LSM4-203ENST00000593829 CALD1Q05682 793 aaKnown RBP25.58■■□□□ 1.69
LSM4-203ENST00000593829 COL23A1Q86Y22 540 aaPredicted RBP25.58■■□□□ 1.69
LSM4-203ENST00000593829 RTCBQ9Y3I0 505 aaKnown RBP25.58■■□□□ 1.69
LSM4-203ENST00000593829 KDM3BQ7LBC6 1761 aa25.58■■□□□ 1.69
LSM4-203ENST00000593829 MSH5O43196 834 aa25.57■■□□□ 1.68
LSM4-203ENST00000593829 CCDC27Q2M243 656 aa25.57■■□□□ 1.68
LSM4-203ENST00000593829 AMIGO3Q86WK7 504 aa25.57■■□□□ 1.68
LSM4-203ENST00000593829 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.57■■□□□ 1.68
LSM4-203ENST00000593829 PHF14O94880 888 aa25.57■■□□□ 1.68
LSM4-203ENST00000593829 SNRPA1P09661 255 aaKnown RBP25.57■■□□□ 1.68
LSM4-203ENST00000593829 CCDC87Q9NVE4 849 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms