RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 SUB1P53999 127 aaKnown RBP eCLIP15.02■□□□□ -05e-12■■■■■ 99.5
LSM4-203ENST00000593829 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.7■■□□□ 1.076e-40■■■■■ 76.3
LSM4-203ENST00000593829 SF3B1O75533 1304 aaKnown RBP eCLIP21.22■□□□□ 0.996e-7■■■■■ 71.8
LSM4-203ENST00000593829 DDX3XO00571 662 aaKnown RBP eCLIP20.36■□□□□ 0.851e-52■■■■■ 70.2
LSM4-203ENST00000593829 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.94■□□□□ 0.941e-9■■■■■ 59.3
LSM4-203ENST00000593829 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.94■■■□□ 2.381e-6■■■■■ 37.1
LSM4-203ENST00000593829 METAP2P50579 478 aaKnown RBP eCLIP22.69■■□□□ 1.223e-7■■■■■ 36.2
LSM4-203ENST00000593829 EFTUD2Q15029 972 aaKnown RBP eCLIP18.95■□□□□ 0.622e-11■■■■■ 29.6
LSM4-203ENST00000593829 ZRANB2O95218 330 aaKnown RBP eCLIP20.84■□□□□ 0.933e-6■■■■■ 27.8
LSM4-203ENST00000593829 NOLC1Q14978 699 aaKnown RBP eCLIP21.65■■□□□ 1.069e-14■■■■■ 27.3
LSM4-203ENST00000593829 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.33■□□□□ 0.218e-7■■■■■ 27.2
LSM4-203ENST00000593829 RBM15Q96T37 977 aaKnown RBP eCLIP19.68■□□□□ 0.745e-7■■■■□ 23.6
LSM4-203ENST00000593829 PABPC4Q13310 644 aaKnown RBP eCLIP23.18■■□□□ 1.32e-14■■■■□ 19.6
LSM4-203ENST00000593829 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.9■□□□□ 0.943e-6■■■□□ 18.4
LSM4-203ENST00000593829 UPF1Q92900 1129 aaKnown RBP eCLIP26.44■■□□□ 1.828e-33■■■□□ 18.1
LSM4-203ENST00000593829 TIA1P31483 386 aaKnown RBP eCLIP18.31■□□□□ 0.521e-8■■■□□ 17.7
LSM4-203ENST00000593829 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.55■■□□□ 1.362e-8■■■□□ 17.4
LSM4-203ENST00000593829 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.61■■□□□ 1.211e-7■■■□□ 17.2
LSM4-203ENST00000593829 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.76■■□□□ 1.231e-7■■■□□ 16
LSM4-203ENST00000593829 YBX3P16989 372 aaKnown RBP eCLIP24.92■■□□□ 1.581e-10■■■□□ 15.9
LSM4-203ENST00000593829 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31■■■□□ 2.554e-7■■■□□ 15.9
LSM4-203ENST00000593829 LARP4Q71RC2 724 aaKnown RBP eCLIP18.15■□□□□ 0.51e-6■■■□□ 15.8
LSM4-203ENST00000593829 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.85■□□□□ 0.452e-9■■■□□ 15.1
LSM4-203ENST00000593829 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.72■■□□□ 1.393e-8■■□□□ 14.5
LSM4-203ENST00000593829 AQRO60306 1485 aaKnown RBP eCLIP33.66■■■□□ 2.985e-8■■□□□ 13.7
LSM4-203ENST00000593829 HNRNPKP61978 463 aaKnown RBP eCLIP19.48■□□□□ 0.715e-6■□□□□ 11.2
LSM4-203ENST00000593829 HNRNPMP52272 730 aaKnown RBP eCLIP30.41■■■□□ 2.466e-16■□□□□ 10.9
LSM4-203ENST00000593829 FXR2P51116 673 aaKnown RBP eCLIP21.94■■□□□ 1.16e-8■□□□□ 9.9
LSM4-203ENST00000593829 PUM1Q14671 1186 aaKnown RBP eCLIP19.49■□□□□ 0.718e-8■□□□□ 9.6
LSM4-203ENST00000593829 NCBP2P52298 156 aaKnown RBP eCLIP18.14■□□□□ 0.494e-7■□□□□ 8.2
LSM4-203ENST00000593829 RPS3P23396 243 aaKnown RBP eCLIP19.17■□□□□ 0.663e-7■□□□□ 8.1
LSM4-203ENST00000593829 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.57■■■□□ 2.322e-7■□□□□ 8
Retrieved 32 of 32 RNA–protein pairs in 9.8 ms