RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 MDN1Q9NU22 5596 aa7.56□□□□□ -1.2
LSM4-203ENST00000593829 SPRR2EP22531 72 aa7.5□□□□□ -1.21
LSM4-203ENST00000593829 SPRR2BP35325 72 aa7.5□□□□□ -1.21
LSM4-203ENST00000593829 SPRR2AP35326 72 aa7.5□□□□□ -1.21
LSM4-203ENST00000593829 LCE1AQ5T7P2 110 aa7.44□□□□□ -1.22
LSM4-203ENST00000593829 LCE3AQ5TA76 89 aa7.38□□□□□ -1.23
LSM4-203ENST00000593829 KRTAP20-1Q3LI63 56 aa7.33□□□□□ -1.24
LSM4-203ENST00000593829 KRTAP19-7Q3SYF9 63 aa7.33□□□□□ -1.24
LSM4-203ENST00000593829 SPRR2DP22532 72 aa7.25□□□□□ -1.25
LSM4-203ENST00000593829 MT1EP04732 61 aa7.25□□□□□ -1.25
LSM4-203ENST00000593829 KRTAP2-3P0C7H8 128 aa7.23□□□□□ -1.25
LSM4-203ENST00000593829 KRTAP19-5Q3LI72 72 aa7.23□□□□□ -1.25
LSM4-203ENST00000593829 KRTAP2-4Q9BYR9 128 aa7.23□□□□□ -1.25
LSM4-203ENST00000593829 KRTAP19-3Q7Z4W3 81 aa7.13□□□□□ -1.27
LSM4-203ENST00000593829 LCE5AQ5TCM9 118 aa7.1□□□□□ -1.27
LSM4-203ENST00000593829 INE1O15225 51 aa7.07□□□□□ -1.28
LSM4-203ENST00000593829 KRTAP12-3P60328 96 aa7.05□□□□□ -1.28
LSM4-203ENST00000593829 LCE3BQ5TA77 95 aa7.02□□□□□ -1.29
LSM4-203ENST00000593829 KRTAP2-2Q9BYT5 123 aa7.02□□□□□ -1.29
LSM4-203ENST00000593829 KRTAP2-1Q9BYU5 128 aa7.02□□□□□ -1.29
LSM4-203ENST00000593829 MT1GP13640 62 aa7□□□□□ -1.29
LSM4-203ENST00000593829 MT1LQ93083 61 aa6.99□□□□□ -1.29
LSM4-203ENST00000593829 MT1MQ8N339 61 aa6.88□□□□□ -1.31
LSM4-203ENST00000593829 DSTQ03001 7570 aaKnown RBP6.77□□□□□ -1.32
LSM4-203ENST00000593829 KRTAP4-3Q9BYR4 195 aa6.69□□□□□ -1.34
LSM4-203ENST00000593829 LCE3CQ5T5A8 94 aa6.67□□□□□ -1.34
LSM4-203ENST00000593829 KRTAP4-7Q9BYR0 210 aa6.65□□□□□ -1.34
LSM4-203ENST00000593829 KRTAP19-4Q3LI73 84 aa6.62□□□□□ -1.35
LSM4-203ENST00000593829 KRTAP4-9Q9BYQ8 210 aa6.44□□□□□ -1.38
LSM4-203ENST00000593829 LCE4AQ5TA78 99 aa6.43□□□□□ -1.38
LSM4-203ENST00000593829 KRTAP9-6A8MVA2 160 aa6.38□□□□□ -1.39
LSM4-203ENST00000593829 KRTAP5-4Q6L8H1 288 aa6.37□□□□□ -1.39
LSM4-203ENST00000593829 LCE1DQ5T752 114 aa6.33□□□□□ -1.4
LSM4-203ENST00000593829 MT4P47944 62 aa6.31□□□□□ -1.4
LSM4-203ENST00000593829 LOC100996750A0A140TA64 210 aa6.29□□□□□ -1.4
LSM4-203ENST00000593829 KRTAP5-5Q701N2 237 aaPredicted RBP6.27□□□□□ -1.41
LSM4-203ENST00000593829 HMCN1Q96RW7 5635 aa6.19□□□□□ -1.42
LSM4-203ENST00000593829 KRTAP4-6Q9BYQ5 205 aa6.16□□□□□ -1.42
LSM4-203ENST00000593829 KRTAP12-4P60329 112 aa6.05□□□□□ -1.44
LSM4-203ENST00000593829 KRTAP20-2Q3LI61 65 aa5.99□□□□□ -1.45
LSM4-203ENST00000593829 SYNE1Q8NF91 8797 aaKnown RBP5.95□□□□□ -1.46
LSM4-203ENST00000593829 MT1AP04731 61 aa5.95□□□□□ -1.46
LSM4-203ENST00000593829 GPR98Q8WXG9 6306 aa5.91□□□□□ -1.46
LSM4-203ENST00000593829 KRTAP6-1Q3LI64 71 aa5.89□□□□□ -1.47
LSM4-203ENST00000593829 AHNAK2Q8IVF2 5795 aa5.83□□□□□ -1.48
LSM4-203ENST00000593829 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
LSM4-203ENST00000593829 KRTAP9-4Q9BYQ2 154 aa5.72□□□□□ -1.49
LSM4-203ENST00000593829 KRTAP5-10Q6L8G5 202 aa5.71□□□□□ -1.5
LSM4-203ENST00000593829 KRTAP5-2Q701N4 177 aa5.63□□□□□ -1.51
LSM4-203ENST00000593829 KRTAP6-2Q3LI66 62 aa5.57□□□□□ -1.52
LSM4-203ENST00000593829 KRTAP5-7Q6L8G8 165 aa5.44□□□□□ -1.54
LSM4-203ENST00000593829 MT3P25713 68 aa5.44□□□□□ -1.54
LSM4-203ENST00000593829 KRTAP4-11Q9BYQ6 195 aa5.39□□□□□ -1.55
LSM4-203ENST00000593829 KRTAP5-8O75690 187 aa5.19□□□□□ -1.58
LSM4-203ENST00000593829 LCE3DQ9BYE3 92 aa5.16□□□□□ -1.58
LSM4-203ENST00000593829 OBSCNQ5VST9 7968 aa5.16□□□□□ -1.58
LSM4-203ENST00000593829 LCE3EQ5T5B0 92 aa5.14□□□□□ -1.59
LSM4-203ENST00000593829 KRTAP5-1Q6L8H4 278 aa4.99□□□□□ -1.61
LSM4-203ENST00000593829 PRM1P04553 51 aa4.95□□□□□ -1.62
LSM4-203ENST00000593829 LCE1EQ5T753 118 aa4.91□□□□□ -1.62
LSM4-203ENST00000593829 KRTAP9-9Q9BYP9 154 aa4.88□□□□□ -1.63
LSM4-203ENST00000593829 MUC5ACP98088 5654 aa4.82□□□□□ -1.64
LSM4-203ENST00000593829 KRTAP4-12Q9BQ66 201 aa4.77□□□□□ -1.65
LSM4-203ENST00000593829 MUC5BQ9HC84 5762 aaPredicted RBP4.74□□□□□ -1.65
LSM4-203ENST00000593829 AHNAKQ09666 5890 aaKnown RBP4.69□□□□□ -1.66
LSM4-203ENST00000593829 LCE1BQ5T7P3 118 aa4.6□□□□□ -1.67
LSM4-203ENST00000593829 KRTAP4-2Q9BYR5 136 aa4.6□□□□□ -1.67
LSM4-203ENST00000593829 LCE1CQ5T751 118 aa4.56□□□□□ -1.68
LSM4-203ENST00000593829 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.19□□□□□ -1.74
LSM4-203ENST00000593829 KRTAP5-11Q6L8G4 156 aa4.09□□□□□ -1.75
LSM4-203ENST00000593829 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
LSM4-203ENST00000593829 KRTAP21-2Q3LI59 83 aa3.87□□□□□ -1.79
LSM4-203ENST00000593829 PHGR1C9JFL3 82 aa3.52□□□□□ -1.85
LSM4-203ENST00000593829 KRTAP4-4Q9BYR3 166 aa3.5□□□□□ -1.85
LSM4-203ENST00000593829 KRTAP21-1Q3LI58 79 aa3.24□□□□□ -1.89
LSM4-203ENST00000593829 MUC19Q7Z5P9 8384 aa3.17□□□□□ -1.9
LSM4-203ENST00000593829 MUC16Q8WXI7 14507 aa2.26□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 13.3 ms