RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867	NUDC	Q9Y266	331 aa		23.21	■■□□□ 1.31
MBD1-221	ENST00000589867	PNPLA7	Q6ZV29	1317 aa		23.21	■■□□□ 1.31
MBD1-221	ENST00000589867	CABP4	P57796	275 aa		23.2	■■□□□ 1.3
MBD1-221	ENST00000589867	ITPK1	Q13572	414 aa		23.2	■■□□□ 1.3
MBD1-221	ENST00000589867	AMIGO3	Q86WK7	504 aa		23.19	■■□□□ 1.3
MBD1-221	ENST00000589867	C4B	P0C0L5	1744 aa		23.19	■■□□□ 1.3
MBD1-221	ENST00000589867	FCHSD2	O94868	740 aa		23.18	■■□□□ 1.3
MBD1-221	ENST00000589867	LINC00116	Q8NCU8	138 aa		23.18	■■□□□ 1.3
MBD1-221	ENST00000589867	ZNF831	Q5JPB2	1677 aa		23.18	■■□□□ 1.3
MBD1-221	ENST00000589867	ZBTB7A	O95365	584 aa		23.17	■■□□□ 1.3
MBD1-221	ENST00000589867	IL17RE	Q8NFR9	667 aa		23.17	■■□□□ 1.3
MBD1-221	ENST00000589867	SLC52A2	Q9HAB3	445 aa		23.17	■■□□□ 1.3
MBD1-221	ENST00000589867	MAP3K5	Q99683	1374 aa		23.16	■■□□□ 1.3
MBD1-221	ENST00000589867	MYBBP1A	Q9BQG0	1328 aa	Known RBP	23.16	■■□□□ 1.3
MBD1-221	ENST00000589867	ZNF316	A6NFI3	1004 aa	Predicted RBP	23.16	■■□□□ 1.3
MBD1-221	ENST00000589867	PTGER2	P43116	358 aa		23.16	■■□□□ 1.3
MBD1-221	ENST00000589867	GAS2L2	Q8NHY3	880 aa		23.16	■■□□□ 1.3
MBD1-221	ENST00000589867	PRKRIP1	Q9H875	184 aa	Predicted RBP	23.16	■■□□□ 1.3
MBD1-221	ENST00000589867	UBR3	Q6ZT12	1888 aa		23.15	■■□□□ 1.3
MBD1-221	ENST00000589867	SIPA1L3	O60292	1781 aa	Predicted RBP	23.15	■■□□□ 1.3
MBD1-221	ENST00000589867	PLEKHF1	Q96S99	279 aa		23.15	■■□□□ 1.3
MBD1-221	ENST00000589867	SGIP1	Q9BQI5	828 aa		23.15	■■□□□ 1.3
MBD1-221	ENST00000589867	SPON1	Q9HCB6	807 aa		23.15	■■□□□ 1.3
MBD1-221	ENST00000589867	COL24A1	Q17RW2	1714 aa		23.15	■■□□□ 1.3
MBD1-221	ENST00000589867	SMIM5	Q71RC9	77 aa		23.14	■■□□□ 1.29
MBD1-221	ENST00000589867	COL5A3	P25940	1745 aa	Predicted RBP	23.13	■■□□□ 1.29
MBD1-221	ENST00000589867	COL23A1	Q86Y22	540 aa	Predicted RBP	23.13	■■□□□ 1.29
MBD1-221	ENST00000589867	TFCP2L1	Q9NZI6	479 aa		23.13	■■□□□ 1.29
MBD1-221	ENST00000589867	ATF5	Q9Y2D1	282 aa	Predicted RBP	23.13	■■□□□ 1.29
MBD1-221	ENST00000589867	CEMIP	Q8WUJ3	1361 aa		23.13	■■□□□ 1.29
MBD1-221	ENST00000589867	MYH14	Q7Z406	1995 aa	Known RBP	23.12	■■□□□ 1.29
MBD1-221	ENST00000589867	GNAT3	A8MTJ3	354 aa		23.12	■■□□□ 1.29
MBD1-221	ENST00000589867	ATP6V1A	P38606	617 aa		23.12	■■□□□ 1.29
MBD1-221	ENST00000589867	TJP1	Q07157	1748 aa		23.11	■■□□□ 1.29
MBD1-221	ENST00000589867	SLC39A6	Q13433	755 aa		23.11	■■□□□ 1.29
MBD1-221	ENST00000589867	MTFR1L	Q9H019	292 aa		23.11	■■□□□ 1.29
MBD1-221	ENST00000589867	KCP	Q6ZWJ8	1503 aa		23.11	■■□□□ 1.29
MBD1-221	ENST00000589867	CIC	Q96RK0	1608 aa	Predicted RBP	23.11	■■□□□ 1.29
MBD1-221	ENST00000589867	RBM42	Q9BTD8	480 aa	Known RBP	23.1	■■□□□ 1.29
MBD1-221	ENST00000589867	DLG5	Q8TDM6	1919 aa		23.1	■■□□□ 1.29
MBD1-221	ENST00000589867	UBR2	Q8IWV8	1755 aa		23.09	■■□□□ 1.29
MBD1-221	ENST00000589867	PTCD1	O75127	700 aa	Known RBP	23.09	■■□□□ 1.29
MBD1-221	ENST00000589867	SLC16A10	Q8TF71	515 aa		23.06	■■□□□ 1.28
MBD1-221	ENST00000589867	AK7	Q96M32	723 aa		23.05	■■□□□ 1.28
MBD1-221	ENST00000589867	DCTN1	Q14203	1278 aa		23.04	■■□□□ 1.28
MBD1-221	ENST00000589867	MCM10	Q7L590	875 aa		23.04	■■□□□ 1.28
MBD1-221	ENST00000589867	CNTNAP4	Q9C0A0	1308 aa		23.04	■■□□□ 1.28
MBD1-221	ENST00000589867	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	23.03	■■□□□ 1.28
MBD1-221	ENST00000589867	RC3H1	Q5TC82	1133 aa	Known RBP	23.03	■■□□□ 1.28
MBD1-221	ENST00000589867	GNPAT	O15228	680 aa		23.02	■■□□□ 1.28
MBD1-221	ENST00000589867	KCNQ3	O43525	872 aa		23.02	■■□□□ 1.28
MBD1-221	ENST00000589867	HMGB2	P26583	209 aa	Known RBP	23.01	■■□□□ 1.27
MBD1-221	ENST00000589867	SSFA2	P28290	1259 aa		23.01	■■□□□ 1.27
MBD1-221	ENST00000589867	CCDC184	Q52MB2	194 aa		23.01	■■□□□ 1.27
MBD1-221	ENST00000589867	DNAJC10	Q8IXB1	793 aa		23.01	■■□□□ 1.27
MBD1-221	ENST00000589867	HTATSF1	O43719	755 aa	Known RBP	23	■■□□□ 1.27
MBD1-221	ENST00000589867	PHF14	O94880	888 aa		23	■■□□□ 1.27
MBD1-221	ENST00000589867	TEF	Q10587	303 aa		23	■■□□□ 1.27
MBD1-221	ENST00000589867	NFE2L2	Q16236	605 aa		23	■■□□□ 1.27
MBD1-221	ENST00000589867	INTS5	Q6P9B9	1019 aa	Known RBP	23	■■□□□ 1.27
MBD1-221	ENST00000589867	FLAD1	Q8NFF5	587 aa		23	■■□□□ 1.27
MBD1-221	ENST00000589867	CRKL	P46109	303 aa	Known RBP	22.99	■■□□□ 1.27
MBD1-221	ENST00000589867	ZNF790	Q6PG37	636 aa		22.99	■■□□□ 1.27
MBD1-221	ENST00000589867	ZNF496	Q96IT1	587 aa	Predicted RBP	22.99	■■□□□ 1.27
MBD1-221	ENST00000589867	RPS6KA4	O75676	772 aa		22.98	■■□□□ 1.27
MBD1-221	ENST00000589867	MSL1	Q68DK7	614 aa		22.98	■■□□□ 1.27
MBD1-221	ENST00000589867	C4A	P0C0L4	1744 aa		22.97	■■□□□ 1.27
MBD1-221	ENST00000589867	MSH5	O43196	834 aa		22.97	■■□□□ 1.27
MBD1-221	ENST00000589867	CYP19A1	P11511	503 aa	Predicted RBP	22.97	■■□□□ 1.27
MBD1-221	ENST00000589867	PPP1R1B	Q9UD71	204 aa	Predicted RBP	22.97	■■□□□ 1.27
MBD1-221	ENST00000589867	ADAMTS8	Q9UP79	889 aa		22.97	■■□□□ 1.27
MBD1-221	ENST00000589867	VSIG10	Q8N0Z9	540 aa		22.96	■■□□□ 1.27
MBD1-221	ENST00000589867	RTF1	Q92541	710 aa	Known RBP	22.96	■■□□□ 1.27
MBD1-221	ENST00000589867	ARX	Q96QS3	562 aa		22.96	■■□□□ 1.27
MBD1-221	ENST00000589867	THUMPD2	Q9BTF0	503 aa	Known RBP	22.96	■■□□□ 1.27
MBD1-221	ENST00000589867	ARHGEF1	Q92888	912 aa	Known RBP	22.95	■■□□□ 1.26
MBD1-221	ENST00000589867	RTCB	Q9Y3I0	505 aa	Known RBP	22.95	■■□□□ 1.26
MBD1-221	ENST00000589867	HEG1	Q9ULI3	1381 aa		22.94	■■□□□ 1.26
MBD1-221	ENST00000589867	BTBD11	A6QL63	1104 aa		22.94	■■□□□ 1.26
MBD1-221	ENST00000589867	CCDC146	Q8IYE0	955 aa		22.94	■■□□□ 1.26
MBD1-221	ENST00000589867	FHDC1	Q9C0D6	1143 aa	Predicted RBP	22.94	■■□□□ 1.26
MBD1-221	ENST00000589867	TMPO	P42166	694 aa	Known RBP	22.93	■■□□□ 1.26
MBD1-221	ENST00000589867	PNN	Q9H307	717 aa	Known RBP	22.93	■■□□□ 1.26
MBD1-221	ENST00000589867	MAPK8IP3	Q9UPT6	1336 aa		22.92	■■□□□ 1.26
MBD1-221	ENST00000589867	TTC5	Q8N0Z6	440 aa		22.92	■■□□□ 1.26
MBD1-221	ENST00000589867	NEFM	P07197	916 aa		22.91	■■□□□ 1.26
MBD1-221	ENST00000589867	ADRA2B	P18089	450 aa		22.91	■■□□□ 1.26
MBD1-221	ENST00000589867	TRAPPC3L	Q5T215	181 aa		22.91	■■□□□ 1.26
MBD1-221	ENST00000589867	SYT17	Q9BSW7	474 aa		22.91	■■□□□ 1.26
MBD1-221	ENST00000589867	CCDC87	Q9NVE4	849 aa		22.91	■■□□□ 1.26
MBD1-221	ENST00000589867	MIS18A	Q9NYP9	233 aa		22.91	■■□□□ 1.26
MBD1-221	ENST00000589867	ZBTB1	Q9Y2K1	713 aa		22.91	■■□□□ 1.26
MBD1-221	ENST00000589867	KDM3B	Q7LBC6	1761 aa		22.91	■■□□□ 1.26
MBD1-221	ENST00000589867	SOS1	Q07889	1333 aa	Predicted RBP	22.9	■■□□□ 1.26
MBD1-221	ENST00000589867	PRAMEF22	A3QJZ6	481 aa		22.9	■■□□□ 1.26
MBD1-221	ENST00000589867	WDR43	Q15061	677 aa	Known RBP eCLIP	22.9	■■□□□ 1.26
MBD1-221	ENST00000589867	TAF7	Q15545	349 aa	Predicted RBP	22.9	■■□□□ 1.26
MBD1-221	ENST00000589867	RUNDC1	Q96C34	613 aa		22.9	■■□□□ 1.26
MBD1-221	ENST00000589867	POLD1	P28340	1107 aa		22.89	■■□□□ 1.25
MBD1-221	ENST00000589867	RIPK4	P57078	832 aa		22.89	■■□□□ 1.25

Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms