RNA–Protein interactions for RNA: ENST00000584322.1

BRIP1-206, Transcript of BRCA1 interacting protein C-terminal helicase 1, human

TSL 3

Gene BRIP1, Length 716 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRIP1-206	ENST00000584322	COL16A1	Q07092	1604 aa	Predicted RBP	13.78	□□□□□ -0.2
BRIP1-206	ENST00000584322	PHLPP1	O60346	1717 aa		13.78	□□□□□ -0.2
BRIP1-206	ENST00000584322	MED1	Q15648	1581 aa	Predicted RBP	13.77	□□□□□ -0.21
BRIP1-206	ENST00000584322	SH3D19	Q5HYK7	790 aa		13.77	□□□□□ -0.21
BRIP1-206	ENST00000584322	BEGAIN	Q9BUH8	593 aa		13.77	□□□□□ -0.21
BRIP1-206	ENST00000584322	ZMYND15	Q9H091	742 aa		13.77	□□□□□ -0.21
BRIP1-206	ENST00000584322	ARHGEF10	O15013	1369 aa		13.76	□□□□□ -0.21
BRIP1-206	ENST00000584322	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.75	□□□□□ -0.21
BRIP1-206	ENST00000584322	TNS3	Q68CZ2	1445 aa		13.75	□□□□□ -0.21
BRIP1-206	ENST00000584322	CGNL1	Q0VF96	1302 aa		13.75	□□□□□ -0.21
BRIP1-206	ENST00000584322	PER1	O15534	1290 aa	Predicted RBP	13.75	□□□□□ -0.21
BRIP1-206	ENST00000584322	PTPRE	P23469	700 aa		13.75	□□□□□ -0.21
BRIP1-206	ENST00000584322	FLII	Q13045	1269 aa		13.75	□□□□□ -0.21
BRIP1-206	ENST00000584322	SHPRH	Q149N8	1683 aa		13.75	□□□□□ -0.21
BRIP1-206	ENST00000584322	USP31	Q70CQ4	1352 aa		13.74	□□□□□ -0.21
BRIP1-206	ENST00000584322	FOXO3	O43524	673 aa		13.74	□□□□□ -0.21
BRIP1-206	ENST00000584322	PMFBP1	Q8TBY8	1022 aa		13.74	□□□□□ -0.21
BRIP1-206	ENST00000584322	NLRP7	Q8WX94	980 aa		13.74	□□□□□ -0.21
BRIP1-206	ENST00000584322	PANK3	Q9H999	370 aa		13.74	□□□□□ -0.21
BRIP1-206	ENST00000584322	PIK3C2A	O00443	1686 aa		13.74	□□□□□ -0.21
BRIP1-206	ENST00000584322	TTC21B	Q7Z4L5	1316 aa		13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	PPP1R3G	B7ZBB8	358 aa		13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	HOXB1	P14653	301 aa	Predicted RBP	13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	COL9A1	P20849	921 aa		13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	SKIV2L	Q15477	1246 aa	Known RBP	13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	KRT28	Q7Z3Y7	464 aa		13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	FBXO41	Q8TF61	875 aa		13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	LRRC59	Q96AG4	307 aa	Known RBP	13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	ARX	Q96QS3	562 aa		13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	KNSTRN	Q9Y448	316 aa		13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	NSD3	Q9BZ95	1437 aa		13.73	□□□□□ -0.21
BRIP1-206	ENST00000584322	SPATA31A3	Q5VYP0	1347 aa		13.72	□□□□□ -0.21
BRIP1-206	ENST00000584322	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.72	□□□□□ -0.21
BRIP1-206	ENST00000584322	POLR3GL	Q9BT43	218 aa		13.72	□□□□□ -0.21
BRIP1-206	ENST00000584322	CRYBG1	Q9Y4K1	1723 aa		13.72	□□□□□ -0.21
BRIP1-206	ENST00000584322	MARF1	Q9Y4F3	1742 aa	Known RBP	13.71	□□□□□ -0.21
BRIP1-206	ENST00000584322	OVOS2	A0A0J9YW53	1432 aa		13.71	□□□□□ -0.22
BRIP1-206	ENST00000584322	OVOS2	Q6IE36	1432 aa		13.71	□□□□□ -0.22
BRIP1-206	ENST00000584322	CARD14	Q9BXL6	1004 aa		13.7	□□□□□ -0.22
BRIP1-206	ENST00000584322	SLIT3	O75094	1523 aa		13.69	□□□□□ -0.22
BRIP1-206	ENST00000584322	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.69	□□□□□ -0.22
BRIP1-206	ENST00000584322	ABCA3	Q99758	1704 aa		13.69	□□□□□ -0.22
BRIP1-206	ENST00000584322	ABCC6	O95255	1503 aa		13.69	□□□□□ -0.22
BRIP1-206	ENST00000584322	USP19	O94966	1318 aa		13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	PIP4K2B	P78356	416 aa		13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	DDX10	Q13206	875 aa	Known RBP	13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	DIXDC1	Q155Q3	683 aa		13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	PACS2	Q86VP3	889 aa		13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	NLRP13	Q86W25	1043 aa		13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	EYA1	Q99502	592 aa		13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	FAM198A	Q9UFP1	575 aa		13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	JCAD	Q9P266	1359 aa		13.68	□□□□□ -0.22
BRIP1-206	ENST00000584322	RCCD1	A6NED2	376 aa		13.67	□□□□□ -0.22
BRIP1-206	ENST00000584322	FYB1	O15117	783 aa		13.67	□□□□□ -0.22
BRIP1-206	ENST00000584322	ABTB2	Q8N961	1025 aa		13.67	□□□□□ -0.22
BRIP1-206	ENST00000584322	TSKS	Q9UJT2	592 aa		13.67	□□□□□ -0.22
BRIP1-206	ENST00000584322	KIF24	Q5T7B8	1368 aa		13.67	□□□□□ -0.22
BRIP1-206	ENST00000584322	KCNH5	Q8NCM2	988 aa		13.66	□□□□□ -0.22
BRIP1-206	ENST00000584322	AATK	Q6ZMQ8	1374 aa		13.66	□□□□□ -0.22
BRIP1-206	ENST00000584322	PNPLA6	Q8IY17	1366 aa		13.66	□□□□□ -0.22
BRIP1-206	ENST00000584322	TRIM6-TRIM34	B2RNG4	842 aa		13.65	□□□□□ -0.22
BRIP1-206	ENST00000584322	NBPF26	B4DH59	902 aa		13.65	□□□□□ -0.22
BRIP1-206	ENST00000584322	NUDT18	Q6ZVK8	323 aa		13.65	□□□□□ -0.22
BRIP1-206	ENST00000584322	COG3	Q96JB2	828 aa		13.65	□□□□□ -0.22
BRIP1-206	ENST00000584322	SPATA31A6	Q5VVP1	1343 aa		13.64	□□□□□ -0.23
BRIP1-206	ENST00000584322	PARD3	Q8TEW0	1356 aa		13.64	□□□□□ -0.23
BRIP1-206	ENST00000584322	TATDN2	Q93075	761 aa		13.64	□□□□□ -0.23
BRIP1-206	ENST00000584322	MAP2	P11137	1827 aa	Known RBP	13.64	□□□□□ -0.23
BRIP1-206	ENST00000584322	NFAT5	O94916	1531 aa		13.64	□□□□□ -0.23
BRIP1-206	ENST00000584322	CPD	O75976	1380 aa		13.63	□□□□□ -0.23
BRIP1-206	ENST00000584322	ONECUT3	O60422	494 aa	Predicted RBP	13.63	□□□□□ -0.23
BRIP1-206	ENST00000584322	RALBP1	Q15311	655 aa		13.63	□□□□□ -0.23
BRIP1-206	ENST00000584322	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
BRIP1-206	ENST00000584322	POLR3E	Q9NVU0	708 aa		13.63	□□□□□ -0.23
BRIP1-206	ENST00000584322	DNAJB2	P25686	324 aa		13.62	□□□□□ -0.23
BRIP1-206	ENST00000584322	MYSM1	Q5VVJ2	828 aa		13.62	□□□□□ -0.23
BRIP1-206	ENST00000584322	SULF1	Q8IWU6	871 aa		13.62	□□□□□ -0.23
BRIP1-206	ENST00000584322	DDX17	Q92841	729 aa	Known RBP	13.62	□□□□□ -0.23
BRIP1-206	ENST00000584322	PNMA3	Q9UL41	463 aa		13.62	□□□□□ -0.23
BRIP1-206	ENST00000584322	LTN1	O94822	1766 aa		13.62	□□□□□ -0.23
BRIP1-206	ENST00000584322	SMG6	Q86US8	1419 aa	Known RBP	13.62	□□□□□ -0.23
BRIP1-206	ENST00000584322	RTL1	A6NKG5	1358 aa		13.61	□□□□□ -0.23
BRIP1-206	ENST00000584322	XPC	Q01831	940 aa	Predicted RBP	13.61	□□□□□ -0.23
BRIP1-206	ENST00000584322	NME9	Q86XW9	330 aa		13.61	□□□□□ -0.23
BRIP1-206	ENST00000584322	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.61	□□□□□ -0.23
BRIP1-206	ENST00000584322	TBC1D2	Q9BYX2	928 aa		13.61	□□□□□ -0.23
BRIP1-206	ENST00000584322	HSPA1L	P34931	641 aa		13.6	□□□□□ -0.23
BRIP1-206	ENST00000584322	KCNK17	Q96T54	332 aa		13.6	□□□□□ -0.23
BRIP1-206	ENST00000584322	NWD2	Q9ULI1	1742 aa		13.59	□□□□□ -0.23
BRIP1-206	ENST00000584322	COL14A1	Q05707	1796 aa	Known RBP	13.58	□□□□□ -0.23
BRIP1-206	ENST00000584322	GC	P02774	474 aa		13.58	□□□□□ -0.24
BRIP1-206	ENST00000584322	CLK2	P49760	499 aa	Known RBP	13.58	□□□□□ -0.24
BRIP1-206	ENST00000584322	MORC1	Q86VD1	984 aa		13.58	□□□□□ -0.24
BRIP1-206	ENST00000584322	GGNBP2	Q9H3C7	697 aa		13.58	□□□□□ -0.24
BRIP1-206	ENST00000584322	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.58	□□□□□ -0.24
BRIP1-206	ENST00000584322	FAM208A	Q9UK61	1670 aa	Known RBP	13.58	□□□□□ -0.24
BRIP1-206	ENST00000584322	INSR	P06213	1382 aa		13.58	□□□□□ -0.24
BRIP1-206	ENST00000584322	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.57	□□□□□ -0.24
BRIP1-206	ENST00000584322	TMEM134	Q9H6X4	195 aa		13.57	□□□□□ -0.24
BRIP1-206	ENST00000584322	LMO7	Q8WWI1	1683 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms