RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 PRKRIP1Q9H875 184 aaPredicted RBP26.92■■□□□ 1.9
SS18-218ENST00000581021 LOC102724428A0A0B4J2F2 783 aa26.91■■□□□ 1.9
SS18-218ENST00000581021 SIK1P57059 783 aa26.91■■□□□ 1.9
SS18-218ENST00000581021 SLC4A9Q96Q91 983 aa26.91■■□□□ 1.9
SS18-218ENST00000581021 MAP3K5Q99683 1374 aa26.91■■□□□ 1.9
SS18-218ENST00000581021 QSER1Q2KHR3 1735 aa26.9■■□□□ 1.9
SS18-218ENST00000581021 FCHSD2O94868 740 aa26.9■■□□□ 1.9
SS18-218ENST00000581021 ITPK1Q13572 414 aa26.9■■□□□ 1.9
SS18-218ENST00000581021 PNPLA7Q6ZV29 1317 aa26.9■■□□□ 1.9
SS18-218ENST00000581021 GAS2L2Q8NHY3 880 aa26.89■■□□□ 1.9
SS18-218ENST00000581021 SLC52A2Q9HAB3 445 aa26.89■■□□□ 1.9
SS18-218ENST00000581021 C4BP0C0L5 1744 aa26.89■■□□□ 1.9
SS18-218ENST00000581021 ZBTB7AO95365 584 aa26.88■■□□□ 1.89
SS18-218ENST00000581021 AMIGO3Q86WK7 504 aa26.88■■□□□ 1.89
SS18-218ENST00000581021 LINC00116Q8NCU8 138 aa26.88■■□□□ 1.89
SS18-218ENST00000581021 IL17REQ8NFR9 667 aa26.87■■□□□ 1.89
SS18-218ENST00000581021 GNAT3A8MTJ3 354 aa26.85■■□□□ 1.89
SS18-218ENST00000581021 TFCP2L1Q9NZI6 479 aa26.85■■□□□ 1.89
SS18-218ENST00000581021 ZNF831Q5JPB2 1677 aa26.85■■□□□ 1.89
SS18-218ENST00000581021 PLEKHF1Q96S99 279 aa26.84■■□□□ 1.89
SS18-218ENST00000581021 ATP6V1AP38606 617 aa26.83■■□□□ 1.89
SS18-218ENST00000581021 CEMIPQ8WUJ3 1361 aa26.83■■□□□ 1.88
SS18-218ENST00000581021 SIPA1L3O60292 1781 aaPredicted RBP26.82■■□□□ 1.88
SS18-218ENST00000581021 KCPQ6ZWJ8 1503 aa26.82■■□□□ 1.88
SS18-218ENST00000581021 SMIM5Q71RC9 77 aa26.82■■□□□ 1.88
SS18-218ENST00000581021 SPON1Q9HCB6 807 aa26.82■■□□□ 1.88
SS18-218ENST00000581021 COL5A3P25940 1745 aaPredicted RBP26.82■■□□□ 1.88
SS18-218ENST00000581021 PTCD1O75127 700 aaKnown RBP26.81■■□□□ 1.88
SS18-218ENST00000581021 PTGER2P43116 358 aa26.81■■□□□ 1.88
SS18-218ENST00000581021 SLC39A6Q13433 755 aa26.81■■□□□ 1.88
SS18-218ENST00000581021 RBM42Q9BTD8 480 aaKnown RBP26.81■■□□□ 1.88
SS18-218ENST00000581021 ATF5Q9Y2D1 282 aaPredicted RBP26.81■■□□□ 1.88
SS18-218ENST00000581021 TJP1Q07157 1748 aa26.81■■□□□ 1.88
SS18-218ENST00000581021 UBR3Q6ZT12 1888 aa26.81■■□□□ 1.88
SS18-218ENST00000581021 CICQ96RK0 1608 aaPredicted RBP26.79■■□□□ 1.88
SS18-218ENST00000581021 COL23A1Q86Y22 540 aaPredicted RBP26.79■■□□□ 1.88
SS18-218ENST00000581021 SGIP1Q9BQI5 828 aa26.79■■□□□ 1.88
SS18-218ENST00000581021 MTFR1LQ9H019 292 aa26.78■■□□□ 1.88
SS18-218ENST00000581021 UBR2Q8IWV8 1755 aa26.77■■□□□ 1.88
SS18-218ENST00000581021 MCM10Q7L590 875 aa26.76■■□□□ 1.87
SS18-218ENST00000581021 AK7Q96M32 723 aa26.76■■□□□ 1.87
SS18-218ENST00000581021 DCTN1Q14203 1278 aa26.75■■□□□ 1.87
SS18-218ENST00000581021 COL24A1Q17RW2 1714 aa26.75■■□□□ 1.87
SS18-218ENST00000581021 DLG5Q8TDM6 1919 aa26.74■■□□□ 1.87
SS18-218ENST00000581021 TEFQ10587 303 aa26.73■■□□□ 1.87
SS18-218ENST00000581021 CCDC184Q52MB2 194 aa26.73■■□□□ 1.87
SS18-218ENST00000581021 MYH14Q7Z406 1995 aaKnown RBP26.73■■□□□ 1.87
SS18-218ENST00000581021 GNPATO15228 680 aa26.72■■□□□ 1.87
SS18-218ENST00000581021 PHF14O94880 888 aa26.72■■□□□ 1.87
SS18-218ENST00000581021 CNTNAP4Q9C0A0 1308 aa26.71■■□□□ 1.87
SS18-218ENST00000581021 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.71■■□□□ 1.87
SS18-218ENST00000581021 NFE2L2Q16236 605 aa26.71■■□□□ 1.87
SS18-218ENST00000581021 DNAJC10Q8IXB1 793 aa26.7■■□□□ 1.86
SS18-218ENST00000581021 SLC16A10Q8TF71 515 aa26.7■■□□□ 1.86
SS18-218ENST00000581021 KCNQ3O43525 872 aa26.69■■□□□ 1.86
SS18-218ENST00000581021 CCDC146Q8IYE0 955 aa26.69■■□□□ 1.86
SS18-218ENST00000581021 MAPK8IP3Q9UPT6 1336 aa26.68■■□□□ 1.86
SS18-218ENST00000581021 MSH5O43196 834 aa26.68■■□□□ 1.86
SS18-218ENST00000581021 HTATSF1O43719 755 aaKnown RBP26.68■■□□□ 1.86
SS18-218ENST00000581021 HMGB2P26583 209 aaKnown RBP26.68■■□□□ 1.86
SS18-218ENST00000581021 SSFA2P28290 1259 aa26.68■■□□□ 1.86
SS18-218ENST00000581021 ZNF790Q6PG37 636 aa26.68■■□□□ 1.86
SS18-218ENST00000581021 ZNF496Q96IT1 587 aaPredicted RBP26.68■■□□□ 1.86
SS18-218ENST00000581021 ADAMTS8Q9UP79 889 aa26.68■■□□□ 1.86
SS18-218ENST00000581021 CRKLP46109 303 aaKnown RBP26.67■■□□□ 1.86
SS18-218ENST00000581021 RC3H1Q5TC82 1133 aaKnown RBP26.67■■□□□ 1.86
SS18-218ENST00000581021 MSL1Q68DK7 614 aa26.67■■□□□ 1.86
SS18-218ENST00000581021 RTF1Q92541 710 aaKnown RBP26.67■■□□□ 1.86
SS18-218ENST00000581021 THUMPD2Q9BTF0 503 aaKnown RBP26.67■■□□□ 1.86
SS18-218ENST00000581021 FLAD1Q8NFF5 587 aa26.66■■□□□ 1.86
SS18-218ENST00000581021 NEFMP07197 916 aa26.65■■□□□ 1.86
SS18-218ENST00000581021 WDR43Q15061 677 aaKnown RBP eCLIP26.65■■□□□ 1.86
SS18-218ENST00000581021 INTS5Q6P9B9 1019 aaKnown RBP26.65■■□□□ 1.86
SS18-218ENST00000581021 PNNQ9H307 717 aaKnown RBP26.65■■□□□ 1.86
SS18-218ENST00000581021 PPP1R1BQ9UD71 204 aaPredicted RBP26.65■■□□□ 1.86
SS18-218ENST00000581021 BTBD11A6QL63 1104 aa26.64■■□□□ 1.86
SS18-218ENST00000581021 HEG1Q9ULI3 1381 aa26.63■■□□□ 1.85
SS18-218ENST00000581021 C4AP0C0L4 1744 aa26.63■■□□□ 1.85
SS18-218ENST00000581021 CYP19A1P11511 503 aaPredicted RBP26.63■■□□□ 1.85
SS18-218ENST00000581021 TTC5Q8N0Z6 440 aa26.63■■□□□ 1.85
SS18-218ENST00000581021 RPS6KA4O75676 772 aa26.62■■□□□ 1.85
SS18-218ENST00000581021 VSIG10Q8N0Z9 540 aa26.62■■□□□ 1.85
SS18-218ENST00000581021 RRP7AQ9Y3A4 280 aaKnown RBP26.62■■□□□ 1.85
SS18-218ENST00000581021 RTCBQ9Y3I0 505 aaKnown RBP26.62■■□□□ 1.85
SS18-218ENST00000581021 TMPOP42166 694 aaKnown RBP26.61■■□□□ 1.85
SS18-218ENST00000581021 ARXQ96QS3 562 aa26.61■■□□□ 1.85
SS18-218ENST00000581021 MIS18AQ9NYP9 233 aa26.6■■□□□ 1.85
SS18-218ENST00000581021 RIPK4P57078 832 aa26.59■■□□□ 1.85
SS18-218ENST00000581021 ARHGEF1Q92888 912 aaKnown RBP26.59■■□□□ 1.85
SS18-218ENST00000581021 RUNDC1Q96C34 613 aa26.59■■□□□ 1.85
SS18-218ENST00000581021 FHDC1Q9C0D6 1143 aaPredicted RBP26.59■■□□□ 1.85
SS18-218ENST00000581021 CCDC87Q9NVE4 849 aa26.59■■□□□ 1.85
SS18-218ENST00000581021 KDM3BQ7LBC6 1761 aa26.58■■□□□ 1.85
SS18-218ENST00000581021 ANP32CO43423 234 aa26.58■■□□□ 1.85
SS18-218ENST00000581021 ZBTB1Q9Y2K1 713 aa26.58■■□□□ 1.85
SS18-218ENST00000581021 PRAMEF22A3QJZ6 481 aa26.57■■□□□ 1.84
SS18-218ENST00000581021 ADRA2BP18089 450 aa26.57■■□□□ 1.84
SS18-218ENST00000581021 TAF7Q15545 349 aaPredicted RBP26.57■■□□□ 1.84
SS18-218ENST00000581021 TRAPPC3LQ5T215 181 aa26.57■■□□□ 1.84
SS18-218ENST00000581021 FMNL2Q96PY5 1086 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms