RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-222	ENST00000570139	OXLD1	Q5BKU9	147 aa		10.39	□□□□□ -0.75
CNOT1-222	ENST00000570139	CCDC102B	Q68D86	513 aa		10.39	□□□□□ -0.75
CNOT1-222	ENST00000570139	SPSB2	Q99619	263 aa		10.39	□□□□□ -0.75
CNOT1-222	ENST00000570139	TSR3	Q9UJK0	312 aa	Known RBP	10.39	□□□□□ -0.75
CNOT1-222	ENST00000570139	RRBP1	Q9P2E9	1410 aa	Known RBP	10.39	□□□□□ -0.75
CNOT1-222	ENST00000570139	ARHGEF11	O15085	1522 aa		10.38	□□□□□ -0.75
CNOT1-222	ENST00000570139	CDK13	Q14004	1512 aa	Known RBP	10.38	□□□□□ -0.75
CNOT1-222	ENST00000570139	ICMT	O60725	284 aa		10.38	□□□□□ -0.75
CNOT1-222	ENST00000570139	VAMP1	P23763	118 aa		10.38	□□□□□ -0.75
CNOT1-222	ENST00000570139	OCLN	Q16625	522 aa		10.38	□□□□□ -0.75
CNOT1-222	ENST00000570139	SH3BP5L	Q7L8J4	393 aa		10.38	□□□□□ -0.75
CNOT1-222	ENST00000570139	PLA2G2E	Q9NZK7	142 aa		10.38	□□□□□ -0.75
CNOT1-222	ENST00000570139	ERCC6L2	Q5T890	1561 aa		10.38	□□□□□ -0.75
CNOT1-222	ENST00000570139	PSME1	Q06323	249 aa		10.37	□□□□□ -0.75
CNOT1-222	ENST00000570139	TPCN2	Q8NHX9	752 aa		10.37	□□□□□ -0.75
CNOT1-222	ENST00000570139	STAC3	Q96MF2	364 aa		10.37	□□□□□ -0.75
CNOT1-222	ENST00000570139	PCGF6	Q9BYE7	350 aa		10.37	□□□□□ -0.75
CNOT1-222	ENST00000570139	ITSN2	Q9NZM3	1697 aa		10.37	□□□□□ -0.75
CNOT1-222	ENST00000570139	ZBTB7B	O15156	539 aa	Predicted RBP	10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	C21orf2	O43822	256 aa		10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	DKK1	O94907	266 aa		10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	CCDC125	Q86Z20	511 aa		10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	KIAA1024	Q9UPX6	916 aa		10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	KIF14	Q15058	1648 aa		10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	NCOA2	Q15596	1464 aa		10.36	□□□□□ -0.75
CNOT1-222	ENST00000570139	TRO	Q12816	1431 aa	Predicted RBP	10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	MAGI3	Q5TCQ9	1506 aa		10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	HMGB1	P09429	215 aa	Known RBP	10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	MAPK1	P28482	360 aa		10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	SCNN1A	P37088	669 aa		10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	ZNF211	Q13398	564 aa	Predicted RBP	10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	SF3B2	Q13435	895 aa	Known RBP	10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	ADGRD1	Q6QNK2	874 aa		10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	FAM160A2	Q8N612	972 aa	Predicted RBP	10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	PRIMPOL	Q96LW4	560 aa		10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	UNC93B1	Q9H1C4	597 aa		10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	DCTN4	Q9UJW0	460 aa		10.35	□□□□□ -0.75
CNOT1-222	ENST00000570139	USP4	Q13107	963 aa		10.34	□□□□□ -0.75
CNOT1-222	ENST00000570139	COL19A1	Q14993	1142 aa		10.34	□□□□□ -0.75
CNOT1-222	ENST00000570139	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.34	□□□□□ -0.75
CNOT1-222	ENST00000570139	ASB16	Q96NS5	453 aa		10.34	□□□□□ -0.75
CNOT1-222	ENST00000570139	CARD14	Q9BXL6	1004 aa		10.34	□□□□□ -0.75
CNOT1-222	ENST00000570139	CCNB3	Q8WWL7	1395 aa		10.34	□□□□□ -0.75
CNOT1-222	ENST00000570139	MYOM3	Q5VTT5	1437 aa		10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	KDM5B	Q9UGL1	1544 aa		10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	PTCD1	O75127	700 aa	Known RBP	10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	NBPF20	Q3BBV1	942 aa		10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	TSGA10IP	Q3SY00	556 aa		10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	BPHL	Q86WA6	291 aa	Predicted RBP	10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	ATP10B	O94823	1461 aa		10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	ZCCHC11	Q5TAX3	1644 aa	Known RBP	10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	MIA2	Q96PC5	1412 aa		10.33	□□□□□ -0.76
CNOT1-222	ENST00000570139	MAGEB6P1	A0A0J9YX57	407 aa		10.32	□□□□□ -0.76
CNOT1-222	ENST00000570139	SFI1	A8K8P3	1242 aa		10.32	□□□□□ -0.76
CNOT1-222	ENST00000570139	GIGYF1	O75420	1035 aa	Predicted RBP	10.32	□□□□□ -0.76
CNOT1-222	ENST00000570139	SH3RF1	Q7Z6J0	888 aa		10.32	□□□□□ -0.76
CNOT1-222	ENST00000570139	SLC10A4	Q96EP9	437 aa		10.32	□□□□□ -0.76
CNOT1-222	ENST00000570139	HINFP	Q9BQA5	517 aa		10.32	□□□□□ -0.76
CNOT1-222	ENST00000570139	FGD6	Q6ZV73	1430 aa		10.32	□□□□□ -0.76
CNOT1-222	ENST00000570139	PHLDB1	Q86UU1	1377 aa		10.31	□□□□□ -0.76
CNOT1-222	ENST00000570139	BCAM	P50895	628 aa		10.31	□□□□□ -0.76
CNOT1-222	ENST00000570139	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.31	□□□□□ -0.76
CNOT1-222	ENST00000570139	C8orf37	Q96NL8	207 aa		10.31	□□□□□ -0.76
CNOT1-222	ENST00000570139	ANO2	Q9NQ90	1003 aa		10.31	□□□□□ -0.76
CNOT1-222	ENST00000570139	PRDM9	Q9NQV7	894 aa		10.31	□□□□□ -0.76
CNOT1-222	ENST00000570139	PCDHGA11	Q9Y5H2	935 aa		10.31	□□□□□ -0.76
CNOT1-222	ENST00000570139		M0R2N6	131 aa		10.3	□□□□□ -0.76
CNOT1-222	ENST00000570139	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
CNOT1-222	ENST00000570139	AGER	Q15109	404 aa		10.3	□□□□□ -0.76
CNOT1-222	ENST00000570139	ANKRD13D	Q6ZTN6	518 aa		10.3	□□□□□ -0.76
CNOT1-222	ENST00000570139	FBXO33	Q7Z6M2	555 aa		10.3	□□□□□ -0.76
CNOT1-222	ENST00000570139	SEPT12	Q8IYM1	358 aa		10.3	□□□□□ -0.76
CNOT1-222	ENST00000570139	TTBK1	Q5TCY1	1321 aa	Predicted RBP	10.3	□□□□□ -0.76
CNOT1-222	ENST00000570139	TCOF1	Q13428	1488 aa	Known RBP	10.3	□□□□□ -0.76
CNOT1-222	ENST00000570139	PTPN23	Q9H3S7	1636 aa		10.29	□□□□□ -0.76
CNOT1-222	ENST00000570139	PLEKHD1	A6NEE1	506 aa		10.29	□□□□□ -0.76
CNOT1-222	ENST00000570139	HR	O43593	1189 aa		10.29	□□□□□ -0.76
CNOT1-222	ENST00000570139	LSM11	P83369	360 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
CNOT1-222	ENST00000570139	CCDC24	Q8N4L8	307 aa		10.29	□□□□□ -0.76
CNOT1-222	ENST00000570139	CDV3	Q9UKY7	258 aa	Known RBP	10.29	□□□□□ -0.76
CNOT1-222	ENST00000570139	ADH1B	P00325	375 aa		10.28	□□□□□ -0.76
CNOT1-222	ENST00000570139	WEE1	P30291	646 aa		10.28	□□□□□ -0.76
CNOT1-222	ENST00000570139	ERFE	Q4G0M1	354 aa		10.28	□□□□□ -0.76
CNOT1-222	ENST00000570139	WNT2B	Q93097	391 aa		10.28	□□□□□ -0.76
CNOT1-222	ENST00000570139	COL26A1	Q96A83	441 aa		10.28	□□□□□ -0.76
CNOT1-222	ENST00000570139	PCDHB11	Q9Y5F2	797 aa		10.28	□□□□□ -0.76
CNOT1-222	ENST00000570139	MKNK1	Q9BUB5	465 aa		10.27	□□□□□ -0.77
CNOT1-222	ENST00000570139	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	10.27	□□□□□ -0.77
CNOT1-222	ENST00000570139	MYC	P01106	439 aa	Predicted RBP	10.26	□□□□□ -0.77
CNOT1-222	ENST00000570139	EAPP	Q56P03	285 aa	Predicted RBP	10.26	□□□□□ -0.77
CNOT1-222	ENST00000570139	RGL4	Q8IZJ4	473 aa		10.26	□□□□□ -0.77
CNOT1-222	ENST00000570139	SEPT3	Q9UH03	358 aa		10.26	□□□□□ -0.77
CNOT1-222	ENST00000570139	CDC42BPA	Q5VT25	1732 aa		10.26	□□□□□ -0.77
CNOT1-222	ENST00000570139	RIMBP3C	A6NJZ7	1639 aa		10.25	□□□□□ -0.77
CNOT1-222	ENST00000570139	RIMBP3B	A6NNM3	1639 aa		10.25	□□□□□ -0.77
CNOT1-222	ENST00000570139	PREX2	Q70Z35	1606 aa		10.25	□□□□□ -0.77
CNOT1-222	ENST00000570139	RIMBP3	Q9UFD9	1639 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms