RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 NFKBIBQ15653 356 aa25.29■■□□□ 1.64
CLN3-230ENST00000568076 HDGFL1Q5TGJ6 251 aa25.29■■□□□ 1.64
CLN3-230ENST00000568076 C16orf71Q8IYS4 520 aaPredicted RBP25.29■■□□□ 1.64
CLN3-230ENST00000568076 KDM3BQ7LBC6 1761 aa25.29■■□□□ 1.64
CLN3-230ENST00000568076 ATF3P18847 181 aa25.28■■□□□ 1.64
CLN3-230ENST00000568076 DDX17Q92841 729 aaKnown RBP25.28■■□□□ 1.64
CLN3-230ENST00000568076 KCNQ3O43525 872 aa25.27■■□□□ 1.64
CLN3-230ENST00000568076 GSPT1P15170 499 aaKnown RBP25.27■■□□□ 1.64
CLN3-230ENST00000568076 AMOTQ4VCS5 1084 aa25.27■■□□□ 1.64
CLN3-230ENST00000568076 MPRIPQ6WCQ1 1025 aa25.27■■□□□ 1.64
CLN3-230ENST00000568076 CACNA1FO60840 1977 aa25.27■■□□□ 1.64
CLN3-230ENST00000568076 DEKP35659 375 aaKnown RBP25.27■■□□□ 1.64
CLN3-230ENST00000568076 DCCP43146 1447 aa25.26■■□□□ 1.63
CLN3-230ENST00000568076 ZC3H6P61129 1189 aaKnown RBP25.25■■□□□ 1.63
CLN3-230ENST00000568076 TBC1D9Q6ZT07 1266 aa25.25■■□□□ 1.63
CLN3-230ENST00000568076 OTUD7AQ8TE49 926 aaPredicted RBP25.25■■□□□ 1.63
CLN3-230ENST00000568076 PHAXQ9H814 394 aaKnown RBP25.25■■□□□ 1.63
CLN3-230ENST00000568076 RGPD5Q99666 1765 aa25.24■■□□□ 1.63
CLN3-230ENST00000568076 RNMTO43148 476 aaKnown RBP25.24■■□□□ 1.63
CLN3-230ENST00000568076 SMARCA5O60264 1052 aaPredicted RBP25.24■■□□□ 1.63
CLN3-230ENST00000568076 GNAI2P04899 355 aa25.24■■□□□ 1.63
CLN3-230ENST00000568076 RBM25P49756 843 aaKnown RBP25.24■■□□□ 1.63
CLN3-230ENST00000568076 NCOA3Q9Y6Q9 1424 aa25.24■■□□□ 1.63
CLN3-230ENST00000568076 TEFQ10587 303 aa25.24■■□□□ 1.63
CLN3-230ENST00000568076 ERBB3P21860 1342 aa25.23■■□□□ 1.63
CLN3-230ENST00000568076 N4BP2Q86UW6 1770 aaPredicted RBP25.23■■□□□ 1.63
CLN3-230ENST00000568076 PXDNLA1KZ92 1463 aa25.23■■□□□ 1.63
CLN3-230ENST00000568076 BTBD11A6QL63 1104 aa25.22■■□□□ 1.63
CLN3-230ENST00000568076 APBB1O00213 710 aa25.22■■□□□ 1.63
CLN3-230ENST00000568076 HMMRO75330 724 aa25.22■■□□□ 1.63
CLN3-230ENST00000568076 HOXB7P09629 217 aa25.22■■□□□ 1.63
CLN3-230ENST00000568076 TTC22Q5TAA0 569 aa25.22■■□□□ 1.63
CLN3-230ENST00000568076 BCL11AQ9H165 835 aa25.22■■□□□ 1.63
CLN3-230ENST00000568076 EIF2S2P20042 333 aaKnown RBP25.22■■□□□ 1.63
CLN3-230ENST00000568076 C1orf141Q5JVX7 400 aa25.22■■□□□ 1.63
CLN3-230ENST00000568076 HSPA2P54652 639 aa25.21■■□□□ 1.63
CLN3-230ENST00000568076 GNAI3P08754 354 aa25.2■■□□□ 1.63
CLN3-230ENST00000568076 ANTXR1Q9H6X2 564 aa25.2■■□□□ 1.63
CLN3-230ENST00000568076 OVOS2A0A0G2JMS6 1433 aa25.2■■□□□ 1.62
CLN3-230ENST00000568076 SLKQ9H2G2 1235 aaPredicted RBP25.2■■□□□ 1.62
CLN3-230ENST00000568076 CDC45O75419 566 aa25.18■■□□□ 1.62
CLN3-230ENST00000568076 CHPF2Q9P2E5 772 aa25.18■■□□□ 1.62
CLN3-230ENST00000568076 USP44Q9H0E7 712 aa25.18■■□□□ 1.62
CLN3-230ENST00000568076 CADPS2Q86UW7 1296 aa25.17■■□□□ 1.62
CLN3-230ENST00000568076 PNMA6EA0A0J9YXQ4 647 aa25.16■■□□□ 1.62
CLN3-230ENST00000568076 FRAT2O75474 233 aaPredicted RBP25.16■■□□□ 1.62
CLN3-230ENST00000568076 ATP8B2P98198 1209 aa25.16■■□□□ 1.62
CLN3-230ENST00000568076 NPHP3Q7Z494 1330 aa25.15■■□□□ 1.62
CLN3-230ENST00000568076 LRRFIP2Q9Y608 721 aaKnown RBP25.15■■□□□ 1.62
CLN3-230ENST00000568076 ADAMTS7Q9UKP4 1686 aa25.15■■□□□ 1.62
CLN3-230ENST00000568076 LMTK3Q96Q04 1460 aa25.15■■□□□ 1.62
CLN3-230ENST00000568076 CABLES1Q8TDN4 633 aa25.14■■□□□ 1.62
CLN3-230ENST00000568076 KIF2CQ99661 725 aa25.14■■□□□ 1.62
CLN3-230ENST00000568076 EXOC6BQ9Y2D4 811 aa25.14■■□□□ 1.62
CLN3-230ENST00000568076 COL18A1P39060 1754 aa25.14■■□□□ 1.62
CLN3-230ENST00000568076 HEG1Q9ULI3 1381 aa25.14■■□□□ 1.62
CLN3-230ENST00000568076 TNS3Q68CZ2 1445 aa25.14■■□□□ 1.61
CLN3-230ENST00000568076 SIPA1L3O60292 1781 aaPredicted RBP25.13■■□□□ 1.61
CLN3-230ENST00000568076 ANXA1P04083 346 aa25.13■■□□□ 1.61
CLN3-230ENST00000568076 SDSP20132 328 aa25.12■■□□□ 1.61
CLN3-230ENST00000568076 NLRP2Q9NX02 1062 aa25.12■■□□□ 1.61
CLN3-230ENST00000568076 CRYBG1Q9Y4K1 1723 aa25.11■■□□□ 1.61
CLN3-230ENST00000568076 GIGYF1O75420 1035 aaPredicted RBP25.11■■□□□ 1.61
CLN3-230ENST00000568076 CHMP4AQ9BY43 222 aa25.11■■□□□ 1.61
CLN3-230ENST00000568076 SRCIN1Q9C0H9 1055 aa25.11■■□□□ 1.61
CLN3-230ENST00000568076 PI4KAP2A4QPH2 592 aa25.11■■□□□ 1.61
CLN3-230ENST00000568076 UBTFL1P0CB47 393 aaPredicted RBP25.11■■□□□ 1.61
CLN3-230ENST00000568076 PI4KAP1Q8N8J0 262 aa25.11■■□□□ 1.61
CLN3-230ENST00000568076 BEND3Q5T5X7 828 aa25.1■■□□□ 1.61
CLN3-230ENST00000568076 SPRYD3Q8NCJ5 442 aa25.1■■□□□ 1.61
CLN3-230ENST00000568076 OSBPL3Q9H4L5 887 aa25.1■■□□□ 1.61
CLN3-230ENST00000568076 XIRP1Q702N8 1843 aaKnown RBP25.1■■□□□ 1.61
CLN3-230ENST00000568076 ADCY9O60503 1353 aa25.09■■□□□ 1.61
CLN3-230ENST00000568076 PRAMEF22A3QJZ6 481 aa25.09■■□□□ 1.61
CLN3-230ENST00000568076 DNAAF4Q8WXU2 420 aa25.09■■□□□ 1.61
CLN3-230ENST00000568076 SPATA31A3Q5VYP0 1347 aa25.09■■□□□ 1.61
CLN3-230ENST00000568076 SALL3Q9BXA9 1300 aa25.09■■□□□ 1.61
CLN3-230ENST00000568076 MEGF6O75095 1541 aa25.09■■□□□ 1.61
CLN3-230ENST00000568076 RAPGEF4Q8WZA2 1011 aa25.09■■□□□ 1.61
CLN3-230ENST00000568076 SNX21Q969T3 373 aa25.09■■□□□ 1.61
CLN3-230ENST00000568076 IBTKQ9P2D0 1353 aaPredicted RBP25.08■■□□□ 1.61
CLN3-230ENST00000568076 PDE1AP54750 535 aa25.08■■□□□ 1.61
CLN3-230ENST00000568076 CHRNA2Q15822 529 aa25.08■■□□□ 1.61
CLN3-230ENST00000568076 HSCBQ8IWL3 235 aa25.08■■□□□ 1.61
CLN3-230ENST00000568076 DBF4Q9UBU7 674 aaPredicted RBP25.08■■□□□ 1.61
CLN3-230ENST00000568076 LRRCC1Q9C099 1032 aa25.07■■□□□ 1.6
CLN3-230ENST00000568076 KDM6AO15550 1401 aaPredicted RBP25.07■■□□□ 1.6
CLN3-230ENST00000568076 PROSER3Q2NL68 480 aa25.07■■□□□ 1.6
CLN3-230ENST00000568076 SSH3Q8TE77 659 aa25.05■■□□□ 1.6
CLN3-230ENST00000568076 NBPF7P0C2Y1 421 aaPredicted RBP25.05■■□□□ 1.6
CLN3-230ENST00000568076 TATP17735 454 aaPredicted RBP25.05■■□□□ 1.6
CLN3-230ENST00000568076 PHKG2P15735 406 aa25.04■■□□□ 1.6
CLN3-230ENST00000568076 BRINP3Q76B58 766 aa25.04■■□□□ 1.6
CLN3-230ENST00000568076 ABCC6O95255 1503 aa25.04■■□□□ 1.6
CLN3-230ENST00000568076 CSB-PGBD3P0DP91 1061 aa25.04■■□□□ 1.6
CLN3-230ENST00000568076 POLA2Q14181 598 aa25.03■■□□□ 1.6
CLN3-230ENST00000568076 TSHZ3Q63HK5 1081 aa25.03■■□□□ 1.6
CLN3-230ENST00000568076 PPP1R42Q7Z4L9 355 aa25.03■■□□□ 1.6
CLN3-230ENST00000568076 SCN11AQ9UI33 1791 aa25.03■■□□□ 1.6
CLN3-230ENST00000568076 CD2BP2O95400 341 aaKnown RBP25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms