RNA–Protein interactions for RNA: ENST00000564778.5

SIN3A-205, Transcript of SIN3 transcription regulator family member A, human

TSL 2

Gene SIN3A, Length 617 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SIN3A-205	ENST00000564778	BCL9	O00512	1426 aa		12.84	□□□□□ -0.35
SIN3A-205	ENST00000564778	LGR6	Q9HBX8	967 aa		12.83	□□□□□ -0.36
SIN3A-205	ENST00000564778	PAPPA	Q13219	1627 aa		12.83	□□□□□ -0.36
SIN3A-205	ENST00000564778	FANCI	Q9NVI1	1328 aa		12.83	□□□□□ -0.36
SIN3A-205	ENST00000564778	ERVV-2	B6SEH9	535 aa		12.82	□□□□□ -0.36
SIN3A-205	ENST00000564778	CHL1	O00533	1208 aa		12.82	□□□□□ -0.36
SIN3A-205	ENST00000564778	KRT27	Q7Z3Y8	459 aa		12.82	□□□□□ -0.36
SIN3A-205	ENST00000564778	DOT1L	Q8TEK3	1739 aa		12.82	□□□□□ -0.36
SIN3A-205	ENST00000564778	CCDC125	Q86Z20	511 aa		12.81	□□□□□ -0.36
SIN3A-205	ENST00000564778	MARCH10	Q8NA82	808 aa	Predicted RBP	12.81	□□□□□ -0.36
SIN3A-205	ENST00000564778	DDX54	Q8TDD1	881 aa	Known RBP	12.81	□□□□□ -0.36
SIN3A-205	ENST00000564778	SLC52A2	Q9HAB3	445 aa		12.81	□□□□□ -0.36
SIN3A-205	ENST00000564778	TEF	Q10587	303 aa		12.8	□□□□□ -0.36
SIN3A-205	ENST00000564778	TAF7	Q15545	349 aa	Predicted RBP	12.8	□□□□□ -0.36
SIN3A-205	ENST00000564778	MBIP	Q9NS73	344 aa		12.8	□□□□□ -0.36
SIN3A-205	ENST00000564778	ITGB4	P16144	1822 aa		12.8	□□□□□ -0.36
SIN3A-205	ENST00000564778	TSR2	Q969E8	191 aa	Known RBP	12.79	□□□□□ -0.36
SIN3A-205	ENST00000564778	UBR2	Q8IWV8	1755 aa		12.79	□□□□□ -0.36
SIN3A-205	ENST00000564778	NHS	Q6T4R5	1651 aa		12.78	□□□□□ -0.36
SIN3A-205	ENST00000564778	CT47B1	P0C2W7	299 aa	Predicted RBP	12.78	□□□□□ -0.36
SIN3A-205	ENST00000564778	TSPYL4	Q9UJ04	414 aa		12.78	□□□□□ -0.36
SIN3A-205	ENST00000564778	CABP4	P57796	275 aa		12.77	□□□□□ -0.37
SIN3A-205	ENST00000564778	SF3B2	Q13435	895 aa	Known RBP	12.77	□□□□□ -0.37
SIN3A-205	ENST00000564778	BTBD11	A6QL63	1104 aa		12.76	□□□□□ -0.37
SIN3A-205	ENST00000564778	NFATC2IP	Q8NCF5	419 aa		12.76	□□□□□ -0.37
SIN3A-205	ENST00000564778	LAS1L	Q9Y4W2	734 aa	Known RBP	12.76	□□□□□ -0.37
SIN3A-205	ENST00000564778	SOS1	Q07889	1333 aa	Predicted RBP	12.76	□□□□□ -0.37
SIN3A-205	ENST00000564778	HEG1	Q9ULI3	1381 aa		12.76	□□□□□ -0.37
SIN3A-205	ENST00000564778	KCP	Q6ZWJ8	1503 aa		12.76	□□□□□ -0.37
SIN3A-205	ENST00000564778	SBF2	Q86WG5	1849 aa		12.76	□□□□□ -0.37
SIN3A-205	ENST00000564778	EXOSC9	Q06265	439 aa	Known RBP	12.75	□□□□□ -0.37
SIN3A-205	ENST00000564778	TMOD3	Q9NYL9	352 aa		12.75	□□□□□ -0.37
SIN3A-205	ENST00000564778	EIF4A1	P60842	406 aa	Known RBP	12.74	□□□□□ -0.37
SIN3A-205	ENST00000564778	ZNF790	Q6PG37	636 aa		12.74	□□□□□ -0.37
SIN3A-205	ENST00000564778	ZNF428	Q96B54	188 aa		12.74	□□□□□ -0.37
SIN3A-205	ENST00000564778	MIS18A	Q9NYP9	233 aa		12.74	□□□□□ -0.37
SIN3A-205	ENST00000564778	CIC	Q96RK0	1608 aa	Predicted RBP	12.73	□□□□□ -0.37
SIN3A-205	ENST00000564778	HOXB7	P09629	217 aa		12.73	□□□□□ -0.37
SIN3A-205	ENST00000564778	PIGB	Q92521	554 aa		12.73	□□□□□ -0.37
SIN3A-205	ENST00000564778	LAMB4	A4D0S4	1761 aa		12.72	□□□□□ -0.37
SIN3A-205	ENST00000564778	KCNQ3	O43525	872 aa		12.72	□□□□□ -0.37
SIN3A-205	ENST00000564778	FAM196A	Q6ZSG2	479 aa		12.72	□□□□□ -0.37
SIN3A-205	ENST00000564778	C8orf58	Q8NAV2	365 aa		12.72	□□□□□ -0.37
SIN3A-205	ENST00000564778	KAT6B	Q8WYB5	2073 aa		12.72	□□□□□ -0.37
SIN3A-205	ENST00000564778	BTAF1	O14981	1849 aa		12.72	□□□□□ -0.37
SIN3A-205	ENST00000564778	C5	P01031	1676 aa		12.71	□□□□□ -0.37
SIN3A-205	ENST00000564778	ZNF831	Q5JPB2	1677 aa		12.71	□□□□□ -0.37
SIN3A-205	ENST00000564778	PRIM1	P49642	420 aa	Known RBP	12.71	□□□□□ -0.37
SIN3A-205	ENST00000564778	TWISTNB	Q3B726	338 aa	Predicted RBP	12.71	□□□□□ -0.37
SIN3A-205	ENST00000564778	TTC5	Q8N0Z6	440 aa		12.71	□□□□□ -0.37
SIN3A-205	ENST00000564778	TSPYL6	Q8N831	410 aa		12.71	□□□□□ -0.37
SIN3A-205	ENST00000564778	RCAN3	Q9UKA8	241 aa		12.71	□□□□□ -0.37
SIN3A-205	ENST00000564778	VAMP4	O75379	141 aa		12.7	□□□□□ -0.38
SIN3A-205	ENST00000564778	BAG6	P46379	1132 aa		12.7	□□□□□ -0.38
SIN3A-205	ENST00000564778	SLC39A6	Q13433	755 aa		12.7	□□□□□ -0.38
SIN3A-205	ENST00000564778	KRT24	Q2M2I5	525 aa		12.7	□□□□□ -0.38
SIN3A-205	ENST00000564778	FMNL2	Q96PY5	1086 aa		12.7	□□□□□ -0.38
SIN3A-205	ENST00000564778	RNF123	Q5XPI4	1314 aa		12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	GIGYF1	O75420	1035 aa	Predicted RBP	12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	RARS	P54136	660 aa	Known RBP	12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	ALDH1L2	Q3SY69	923 aa		12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	FAM182B	Q5T319	152 aa		12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	ACSBG1	Q96GR2	724 aa		12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	ZNF496	Q96IT1	587 aa	Predicted RBP	12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	ATG3	Q9NT62	314 aa		12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	CACNA1F	O60840	1977 aa		12.69	□□□□□ -0.38
SIN3A-205	ENST00000564778	TNS1	Q9HBL0	1735 aa	Known RBP	12.68	□□□□□ -0.38
SIN3A-205	ENST00000564778	KCNQ2	O43526	872 aa		12.68	□□□□□ -0.38
SIN3A-205	ENST00000564778	BRPF1	P55201	1214 aa	Predicted RBP	12.68	□□□□□ -0.38
SIN3A-205	ENST00000564778	VSIG10	Q8N0Z9	540 aa		12.68	□□□□□ -0.38
SIN3A-205	ENST00000564778	SYTL4	Q96C24	671 aa	Predicted RBP	12.68	□□□□□ -0.38
SIN3A-205	ENST00000564778	ASAP1	Q9ULH1	1129 aa		12.68	□□□□□ -0.38
SIN3A-205	ENST00000564778	TJP1	Q07157	1748 aa		12.68	□□□□□ -0.38
SIN3A-205	ENST00000564778	PALLD	Q8WX93	1383 aa		12.68	□□□□□ -0.38
SIN3A-205	ENST00000564778	SMARCC1	Q92922	1105 aa	Predicted RBP	12.67	□□□□□ -0.38
SIN3A-205	ENST00000564778	CHMP4A	Q9BY43	222 aa		12.67	□□□□□ -0.38
SIN3A-205	ENST00000564778	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.67	□□□□□ -0.38
SIN3A-205	ENST00000564778	LY75	O60449	1722 aa		12.67	□□□□□ -0.38
SIN3A-205	ENST00000564778	ELL2	O00472	640 aa	Predicted RBP	12.66	□□□□□ -0.38
SIN3A-205	ENST00000564778	SNRPA1	P09661	255 aa	Known RBP	12.66	□□□□□ -0.38
SIN3A-205	ENST00000564778	DEFB132	Q7Z7B7	95 aa		12.66	□□□□□ -0.38
SIN3A-205	ENST00000564778	SSH1	Q8WYL5	1049 aa		12.66	□□□□□ -0.38
SIN3A-205	ENST00000564778	TRIM37	O94972	964 aa		12.65	□□□□□ -0.38
SIN3A-205	ENST00000564778	RGPD3	A6NKT7	1758 aa	Predicted RBP	12.65	□□□□□ -0.38
SIN3A-205	ENST00000564778	RGPD4	Q7Z3J3	1758 aa		12.65	□□□□□ -0.38
SIN3A-205	ENST00000564778	COL5A3	P25940	1745 aa	Predicted RBP	12.65	□□□□□ -0.38
SIN3A-205	ENST00000564778	ERBB4	Q15303	1308 aa		12.64	□□□□□ -0.39
SIN3A-205	ENST00000564778	KIF16B	Q96L93	1317 aa		12.64	□□□□□ -0.39
SIN3A-205	ENST00000564778	RREB1	Q92766	1687 aa		12.64	□□□□□ -0.39
SIN3A-205	ENST00000564778	HDGFL1	Q5TGJ6	251 aa		12.64	□□□□□ -0.39
SIN3A-205	ENST00000564778	CCDC30	Q5VVM6	783 aa		12.64	□□□□□ -0.39
SIN3A-205	ENST00000564778	PTF1A	Q7RTS3	328 aa		12.64	□□□□□ -0.39
SIN3A-205	ENST00000564778	SLC4A9	Q96Q91	983 aa		12.64	□□□□□ -0.39
SIN3A-205	ENST00000564778	SMC4	Q9NTJ3	1288 aa		12.64	□□□□□ -0.39
SIN3A-205	ENST00000564778	PRAMEF22	A3QJZ6	481 aa		12.63	□□□□□ -0.39
SIN3A-205	ENST00000564778	PTCD1	O75127	700 aa	Known RBP	12.63	□□□□□ -0.39
SIN3A-205	ENST00000564778	BCAR3	O75815	825 aa		12.63	□□□□□ -0.39
SIN3A-205	ENST00000564778	RRP1	P56182	461 aa	Known RBP	12.63	□□□□□ -0.39
SIN3A-205	ENST00000564778	MRPL50	Q8N5N7	158 aa	Known RBP	12.63	□□□□□ -0.39
SIN3A-205	ENST00000564778	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.63	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms