RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 BTBD11A6QL63 1104 aa15.74■□□□□ 0.11
HERC1-205ENST00000559886 RARSP54136 660 aaKnown RBP15.74■□□□□ 0.11
HERC1-205ENST00000559886 TSPYL6Q8N831 410 aa15.74■□□□□ 0.11
HERC1-205ENST00000559886 THSD7AQ9UPZ6 1657 aa15.74■□□□□ 0.11
HERC1-205ENST00000559886 ERVV-2B6SEH9 535 aa15.73■□□□□ 0.11
HERC1-205ENST00000559886 VAMP4O75379 141 aa15.73■□□□□ 0.11
HERC1-205ENST00000559886 ZNF428Q96B54 188 aa15.73■□□□□ 0.11
HERC1-205ENST00000559886 TWISTNBQ3B726 338 aaPredicted RBP15.73■□□□□ 0.11
HERC1-205ENST00000559886 NFATC2IPQ8NCF5 419 aa15.73■□□□□ 0.11
HERC1-205ENST00000559886 ITGB4P16144 1822 aa15.72■□□□□ 0.11
HERC1-205ENST00000559886 KRT24Q2M2I5 525 aa15.72■□□□□ 0.11
HERC1-205ENST00000559886 KAT6BQ8WYB5 2073 aa15.71■□□□□ 0.11
HERC1-205ENST00000559886 ELL2O00472 640 aaPredicted RBP15.71■□□□□ 0.11
HERC1-205ENST00000559886 BCAR3O75815 825 aa15.71■□□□□ 0.11
HERC1-205ENST00000559886 RRP1P56182 461 aaKnown RBP15.71■□□□□ 0.11
HERC1-205ENST00000559886 CABP4P57796 275 aa15.71■□□□□ 0.11
HERC1-205ENST00000559886 QTRT2Q9H974 415 aaKnown RBP15.71■□□□□ 0.11
HERC1-205ENST00000559886 KCNQ3O43525 872 aa15.7■□□□□ 0.1
HERC1-205ENST00000559886 ONECUT3O60422 494 aaPredicted RBP15.7■□□□□ 0.1
HERC1-205ENST00000559886 EIF4A1P60842 406 aaKnown RBP15.7■□□□□ 0.1
HERC1-205ENST00000559886 ALDH1L2Q3SY69 923 aa15.7■□□□□ 0.1
HERC1-205ENST00000559886 SOS1Q07889 1333 aaPredicted RBP15.69■□□□□ 0.1
HERC1-205ENST00000559886 NEFLP07196 543 aa15.69■□□□□ 0.1
HERC1-205ENST00000559886 MARCH10Q8NA82 808 aaPredicted RBP15.69■□□□□ 0.1
HERC1-205ENST00000559886 SSH1Q8WYL5 1049 aa15.69■□□□□ 0.1
HERC1-205ENST00000559886 GTF3C3Q9Y5Q9 886 aa15.69■□□□□ 0.1
HERC1-205ENST00000559886 DOT1LQ8TEK3 1739 aa15.68■□□□□ 0.1
HERC1-205ENST00000559886 PAPPAQ13219 1627 aa15.68■□□□□ 0.1
HERC1-205ENST00000559886 ZNF790Q6PG37 636 aa15.68■□□□□ 0.1
HERC1-205ENST00000559886 HEG1Q9ULI3 1381 aa15.68■□□□□ 0.1
HERC1-205ENST00000559886 ZNF772Q68DY9 489 aaPredicted RBP15.68■□□□□ 0.1
HERC1-205ENST00000559886 CACNA1FO60840 1977 aa15.67■□□□□ 0.1
HERC1-205ENST00000559886 UBR2Q8IWV8 1755 aa15.67■□□□□ 0.1
HERC1-205ENST00000559886 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.67■□□□□ 0.1
HERC1-205ENST00000559886 BCL2L13Q9BXK5 485 aa15.67■□□□□ 0.1
HERC1-205ENST00000559886 SMC4Q9NTJ3 1288 aa15.67■□□□□ 0.1
HERC1-205ENST00000559886 PLIN1O60240 522 aa15.67■□□□□ 0.1
HERC1-205ENST00000559886 SLC39A6Q13433 755 aa15.67■□□□□ 0.1
HERC1-205ENST00000559886 A0A0G2JS52 829 aa15.66■□□□□ 0.1
HERC1-205ENST00000559886 BRPF1P55201 1214 aaPredicted RBP15.66■□□□□ 0.1
HERC1-205ENST00000559886 MYT1Q01538 1121 aa15.66■□□□□ 0.1
HERC1-205ENST00000559886 TMOD3Q9NYL9 352 aa15.66■□□□□ 0.1
HERC1-205ENST00000559886 HOXB7P09629 217 aa15.66■□□□□ 0.1
HERC1-205ENST00000559886 IRX6P78412 446 aaPredicted RBP15.65■□□□□ 0.1
HERC1-205ENST00000559886 FKBP8Q14318 412 aa15.65■□□□□ 0.1
HERC1-205ENST00000559886 TTC5Q8N0Z6 440 aa15.65■□□□□ 0.1
HERC1-205ENST00000559886 BCL9O00512 1426 aa15.64■□□□□ 0.09
HERC1-205ENST00000559886 PIGBQ92521 554 aa15.64■□□□□ 0.09
HERC1-205ENST00000559886 GIGYF1O75420 1035 aaPredicted RBP15.63■□□□□ 0.09
HERC1-205ENST00000559886 SEPT12Q8IYM1 358 aa15.63■□□□□ 0.09
HERC1-205ENST00000559886 MRPL50Q8N5N7 158 aaKnown RBP15.63■□□□□ 0.09
HERC1-205ENST00000559886 C5P01031 1676 aa15.63■□□□□ 0.09
HERC1-205ENST00000559886 ZNF496Q96IT1 587 aaPredicted RBP15.63■□□□□ 0.09
HERC1-205ENST00000559886 KIF16BQ96L93 1317 aa15.62■□□□□ 0.09
HERC1-205ENST00000559886 FRAT1Q92837 279 aaPredicted RBP15.62■□□□□ 0.09
HERC1-205ENST00000559886 KCPQ6ZWJ8 1503 aa15.62■□□□□ 0.09
HERC1-205ENST00000559886 BRWD3Q6RI45 1802 aa15.62■□□□□ 0.09
HERC1-205ENST00000559886 TCERG1O14776 1098 aaKnown RBP15.62■□□□□ 0.09
HERC1-205ENST00000559886 PRIM1P49642 420 aaKnown RBP15.62■□□□□ 0.09
HERC1-205ENST00000559886 RBM6P78332 1123 aaKnown RBP15.62■□□□□ 0.09
HERC1-205ENST00000559886 CCDC30Q5VVM6 783 aa15.62■□□□□ 0.09
HERC1-205ENST00000559886 FMNL2Q96PY5 1086 aa15.62■□□□□ 0.09
HERC1-205ENST00000559886 CHMP4AQ9BY43 222 aa15.62■□□□□ 0.09
HERC1-205ENST00000559886 CANXP27824 592 aaKnown RBP15.6■□□□□ 0.09
HERC1-205ENST00000559886 C20orf194Q5TEA3 1177 aa15.6■□□□□ 0.09
HERC1-205ENST00000559886 HDGFL1Q5TGJ6 251 aa15.6■□□□□ 0.09
HERC1-205ENST00000559886 ZKSCAN2Q63HK3 967 aa15.6■□□□□ 0.09
HERC1-205ENST00000559886 SYTL4Q96C24 671 aaPredicted RBP15.6■□□□□ 0.09
HERC1-205ENST00000559886 NOB1Q9ULX3 412 aaKnown RBP15.6■□□□□ 0.09
HERC1-205ENST00000559886 PDE3AQ14432 1141 aa15.6■□□□□ 0.09
HERC1-205ENST00000559886 ATG3Q9NT62 314 aa15.6■□□□□ 0.09
HERC1-205ENST00000559886 ASAP1Q9ULH1 1129 aa15.6■□□□□ 0.09
HERC1-205ENST00000559886 LAMB4A4D0S4 1761 aa15.6■□□□□ 0.09
HERC1-205ENST00000559886 SBF2Q86WG5 1849 aa15.59■□□□□ 0.09
HERC1-205ENST00000559886 IPO8O15397 1037 aaKnown RBP15.59■□□□□ 0.09
HERC1-205ENST00000559886 SNRPA1P09661 255 aaKnown RBP15.59■□□□□ 0.09
HERC1-205ENST00000559886 ACSBG1Q96GR2 724 aa15.59■□□□□ 0.09
HERC1-205ENST00000559886 PRAMEF22A3QJZ6 481 aa15.59■□□□□ 0.09
HERC1-205ENST00000559886 SLC4A2P04920 1241 aa15.59■□□□□ 0.09
HERC1-205ENST00000559886 ERICH6BQ5W0A0 696 aa15.59■□□□□ 0.09
HERC1-205ENST00000559886 ARHGAP45Q92619 1136 aa15.59■□□□□ 0.09
HERC1-205ENST00000559886 STK31Q9BXU1 1019 aa15.59■□□□□ 0.09
HERC1-205ENST00000559886 RGS17Q9UGC6 210 aaPredicted RBP15.59■□□□□ 0.09
HERC1-205ENST00000559886 EIF2S2P20042 333 aaKnown RBP15.58■□□□□ 0.09
HERC1-205ENST00000559886 ATF7IPQ6VMQ6 1270 aa15.58■□□□□ 0.09
HERC1-205ENST00000559886 NECTIN2Q92692 538 aa15.58■□□□□ 0.09
HERC1-205ENST00000559886 NHSQ6T4R5 1651 aa15.58■□□□□ 0.08
HERC1-205ENST00000559886 TRIM27P14373 513 aa15.57■□□□□ 0.08
HERC1-205ENST00000559886 PTCD1O75127 700 aaKnown RBP15.57■□□□□ 0.08
HERC1-205ENST00000559886 KCNQ2O43526 872 aa15.56■□□□□ 0.08
HERC1-205ENST00000559886 MS4A1P11836 297 aa15.56■□□□□ 0.08
HERC1-205ENST00000559886 TNNQ9UQP3 1299 aa15.56■□□□□ 0.08
HERC1-205ENST00000559886 RXRBP28702 533 aa15.56■□□□□ 0.08
HERC1-205ENST00000559886 PTPRCP08575 1304 aa15.56■□□□□ 0.08
HERC1-205ENST00000559886 RLBP1P12271 317 aa15.55■□□□□ 0.08
HERC1-205ENST00000559886 FAM182BQ5T319 152 aa15.55■□□□□ 0.08
HERC1-205ENST00000559886 DZIP1LQ8IYY4 767 aaKnown RBP15.55■□□□□ 0.08
HERC1-205ENST00000559886 VSIG10Q8N0Z9 540 aa15.55■□□□□ 0.08
HERC1-205ENST00000559886 PANK1Q8TE04 598 aa15.55■□□□□ 0.08
HERC1-205ENST00000559886 CHPF2Q9P2E5 772 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 646.7 ms