RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 ERVV-2B6SEH9 535 aa16.1■□□□□ 0.17
TPM1-209ENST00000558072 RNMTO43148 476 aaKnown RBP16.1■□□□□ 0.17
TPM1-209ENST00000558072 CT47B1P0C2W7 299 aaPredicted RBP16.1■□□□□ 0.17
TPM1-209ENST00000558072 TAF7Q15545 349 aaPredicted RBP16.1■□□□□ 0.17
TPM1-209ENST00000558072 IL17REQ8NFR9 667 aa16.1■□□□□ 0.17
TPM1-209ENST00000558072 CEMIPQ8WUJ3 1361 aa16.1■□□□□ 0.17
TPM1-209ENST00000558072 KCNQ2O43526 872 aa16.09■□□□□ 0.17
TPM1-209ENST00000558072 MRC1P22897 1456 aa16.09■□□□□ 0.17
TPM1-209ENST00000558072 TNS1Q9HBL0 1735 aaKnown RBP16.08■□□□□ 0.17
TPM1-209ENST00000558072 TRMT2AQ8IZ69 625 aaKnown RBP16.08■□□□□ 0.16
TPM1-209ENST00000558072 BTAF1O14981 1849 aa16.08■□□□□ 0.16
TPM1-209ENST00000558072 ZNF428Q96B54 188 aa16.07■□□□□ 0.16
TPM1-209ENST00000558072 SOS1Q07889 1333 aaPredicted RBP16.07■□□□□ 0.16
TPM1-209ENST00000558072 PAPPAQ13219 1627 aa16.07■□□□□ 0.16
TPM1-209ENST00000558072 CHL1O00533 1208 aa16.06■□□□□ 0.16
TPM1-209ENST00000558072 ZNF853P0CG23 659 aa16.06■□□□□ 0.16
TPM1-209ENST00000558072 CABP4P57796 275 aa16.06■□□□□ 0.16
TPM1-209ENST00000558072 SYTL4Q96C24 671 aaPredicted RBP16.06■□□□□ 0.16
TPM1-209ENST00000558072 LAS1LQ9Y4W2 734 aaKnown RBP16.06■□□□□ 0.16
TPM1-209ENST00000558072 PRIM1P49642 420 aaKnown RBP16.05■□□□□ 0.16
TPM1-209ENST00000558072 DUSP27Q5VZP5 1158 aa16.05■□□□□ 0.16
TPM1-209ENST00000558072 SLC52A2Q9HAB3 445 aa16.05■□□□□ 0.16
TPM1-209ENST00000558072 MIS18AQ9NYP9 233 aa16.05■□□□□ 0.16
TPM1-209ENST00000558072 TSPYL4Q9UJ04 414 aa16.05■□□□□ 0.16
TPM1-209ENST00000558072 KAT6BQ8WYB5 2073 aa16.04■□□□□ 0.16
TPM1-209ENST00000558072 SPINK5Q9NQ38 1064 aaPredicted RBP16.04■□□□□ 0.16
TPM1-209ENST00000558072 KDM3BQ7LBC6 1761 aa16.04■□□□□ 0.16
TPM1-209ENST00000558072 BTBD11A6QL63 1104 aa16.03■□□□□ 0.16
TPM1-209ENST00000558072 KCNQ3O43525 872 aa16.03■□□□□ 0.16
TPM1-209ENST00000558072 TRIM37O94972 964 aa16.03■□□□□ 0.16
TPM1-209ENST00000558072 CDCA7LQ96GN5 454 aa16.03■□□□□ 0.16
TPM1-209ENST00000558072 FANCIQ9NVI1 1328 aa16.02■□□□□ 0.16
TPM1-209ENST00000558072 HMGB2P26583 209 aaKnown RBP16.02■□□□□ 0.16
TPM1-209ENST00000558072 SLC39A6Q13433 755 aa16.02■□□□□ 0.16
TPM1-209ENST00000558072 TMOD3Q9NYL9 352 aa16.02■□□□□ 0.16
TPM1-209ENST00000558072 BCL9O00512 1426 aa16.02■□□□□ 0.15
TPM1-209ENST00000558072 TTC5Q8N0Z6 440 aa16.01■□□□□ 0.15
TPM1-209ENST00000558072 NFATC2IPQ8NCF5 419 aa16.01■□□□□ 0.15
TPM1-209ENST00000558072 PIGBQ92521 554 aa16.01■□□□□ 0.15
TPM1-209ENST00000558072 MBIPQ9NS73 344 aa16.01■□□□□ 0.15
TPM1-209ENST00000558072 C5P01031 1676 aa16.01■□□□□ 0.15
TPM1-209ENST00000558072 HOXB7P09629 217 aa16■□□□□ 0.15
TPM1-209ENST00000558072 TSR2Q969E8 191 aaKnown RBP16■□□□□ 0.15
TPM1-209ENST00000558072 UBR2Q8IWV8 1755 aa16■□□□□ 0.15
TPM1-209ENST00000558072 KCPQ6ZWJ8 1503 aa15.99■□□□□ 0.15
TPM1-209ENST00000558072 KRT24Q2M2I5 525 aa15.99■□□□□ 0.15
TPM1-209ENST00000558072 FAM196AQ6ZSG2 479 aa15.99■□□□□ 0.15
TPM1-209ENST00000558072 ASAP1Q9ULH1 1129 aa15.99■□□□□ 0.15
TPM1-209ENST00000558072 KCNQ4P56696 695 aa15.98■□□□□ 0.15
TPM1-209ENST00000558072 ZNF790Q6PG37 636 aa15.97■□□□□ 0.15
TPM1-209ENST00000558072 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.97■□□□□ 0.15
TPM1-209ENST00000558072 SMARCC1Q92922 1105 aaPredicted RBP15.97■□□□□ 0.15
TPM1-209ENST00000558072 RCAN3Q9UKA8 241 aa15.97■□□□□ 0.15
TPM1-209ENST00000558072 TJP1Q07157 1748 aa15.97■□□□□ 0.15
TPM1-209ENST00000558072 EXOSC9Q06265 439 aaKnown RBP15.96■□□□□ 0.15
TPM1-209ENST00000558072 ALDH1L2Q3SY69 923 aa15.96■□□□□ 0.15
TPM1-209ENST00000558072 FMNL2Q96PY5 1086 aa15.96■□□□□ 0.15
TPM1-209ENST00000558072 ATG3Q9NT62 314 aa15.96■□□□□ 0.15
TPM1-209ENST00000558072 EP400Q96L91 3159 aa15.96■□□□□ 0.15
TPM1-209ENST00000558072 LY75O60449 1722 aa15.95■□□□□ 0.14
TPM1-209ENST00000558072 PRAMEF22A3QJZ6 481 aa15.95■□□□□ 0.14
TPM1-209ENST00000558072 TWISTNBQ3B726 338 aaPredicted RBP15.95■□□□□ 0.14
TPM1-209ENST00000558072 TEX13AQ9BXU3 409 aaPredicted RBP15.95■□□□□ 0.14
TPM1-209ENST00000558072 EIF4A1P60842 406 aaKnown RBP15.94■□□□□ 0.14
TPM1-209ENST00000558072 PALLDQ8WX93 1383 aa15.94■□□□□ 0.14
TPM1-209ENST00000558072 PTCD1O75127 700 aaKnown RBP15.93■□□□□ 0.14
TPM1-209ENST00000558072 CCDC30Q5VVM6 783 aa15.93■□□□□ 0.14
TPM1-209ENST00000558072 DEFB132Q7Z7B7 95 aa15.93■□□□□ 0.14
TPM1-209ENST00000558072 VSIG10Q8N0Z9 540 aa15.93■□□□□ 0.14
TPM1-209ENST00000558072 SLC4A9Q96Q91 983 aa15.93■□□□□ 0.14
TPM1-209ENST00000558072 BCL11BQ9C0K0 894 aaPredicted RBP15.93■□□□□ 0.14
TPM1-209ENST00000558072 APBA3O96018 575 aa15.92■□□□□ 0.14
TPM1-209ENST00000558072 SNRPA1P09661 255 aaKnown RBP15.92■□□□□ 0.14
TPM1-209ENST00000558072 MS4A1P11836 297 aa15.92■□□□□ 0.14
TPM1-209ENST00000558072 RBM42Q9BTD8 480 aaKnown RBP15.92■□□□□ 0.14
TPM1-209ENST00000558072 STK31Q9BXU1 1019 aa15.92■□□□□ 0.14
TPM1-209ENST00000558072 LAMB4A4D0S4 1761 aa15.91■□□□□ 0.14
TPM1-209ENST00000558072 VAMP4O75379 141 aa15.91■□□□□ 0.14
TPM1-209ENST00000558072 ZNF496Q96IT1 587 aaPredicted RBP15.91■□□□□ 0.14
TPM1-209ENST00000558072 RREB1Q92766 1687 aa15.9■□□□□ 0.14
TPM1-209ENST00000558072 ELL2O00472 640 aaPredicted RBP15.9■□□□□ 0.14
TPM1-209ENST00000558072 IPO8O15397 1037 aaKnown RBP15.9■□□□□ 0.14
TPM1-209ENST00000558072 BRPF1P55201 1214 aaPredicted RBP15.9■□□□□ 0.14
TPM1-209ENST00000558072 TSPYL6Q8N831 410 aa15.9■□□□□ 0.14
TPM1-209ENST00000558072 NUP188Q5SRE5 1749 aa15.9■□□□□ 0.14
TPM1-209ENST00000558072 TAF1LQ8IZX4 1826 aa15.89■□□□□ 0.13
TPM1-209ENST00000558072 HEG1Q9ULI3 1381 aa15.89■□□□□ 0.13
TPM1-209ENST00000558072 COL5A3P25940 1745 aaPredicted RBP15.89■□□□□ 0.13
TPM1-209ENST00000558072 GIGYF1O75420 1035 aaPredicted RBP15.89■□□□□ 0.13
TPM1-209ENST00000558072 RARSP54136 660 aaKnown RBP15.89■□□□□ 0.13
TPM1-209ENST00000558072 EN1Q05925 392 aaPredicted RBP15.89■□□□□ 0.13
TPM1-209ENST00000558072 C8orf58Q8NAV2 365 aa15.89■□□□□ 0.13
TPM1-209ENST00000558072 UPF1Q92900 1129 aaKnown RBP eCLIP15.89■□□□□ 0.13
TPM1-209ENST00000558072 ERBB4Q15303 1308 aa15.89■□□□□ 0.13
TPM1-209ENST00000558072 KIF16BQ96L93 1317 aa15.89■□□□□ 0.13
TPM1-209ENST00000558072 NEFLP07196 543 aa15.88■□□□□ 0.13
TPM1-209ENST00000558072 PIP4K2AP48426 406 aaPredicted RBP15.88■□□□□ 0.13
TPM1-209ENST00000558072 ITPK1Q13572 414 aa15.88■□□□□ 0.13
TPM1-209ENST00000558072 EZH2Q15910 746 aaKnown RBP15.88■□□□□ 0.13
TPM1-209ENST00000558072 NECTIN2Q92692 538 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms