RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 OTUD7AQ8TE49 926 aaPredicted RBP18■□□□□ 0.47
CUX1-214ENST00000550008 MCM2P49736 904 aa18■□□□□ 0.47
CUX1-214ENST00000550008 SYNE3Q6ZMZ3 975 aa18■□□□□ 0.47
CUX1-214ENST00000550008 MTMR7Q9Y216 660 aa18■□□□□ 0.47
CUX1-214ENST00000550008 TTC21AQ8NDW8 1320 aa18■□□□□ 0.47
CUX1-214ENST00000550008 CASTP20810 708 aaKnown RBP17.99■□□□□ 0.47
CUX1-214ENST00000550008 ANKRD44Q8N8A2 993 aa17.99■□□□□ 0.47
CUX1-214ENST00000550008 CDC42BPAQ5VT25 1732 aa17.99■□□□□ 0.47
CUX1-214ENST00000550008 CCDC57Q2TAC2 916 aa17.99■□□□□ 0.47
CUX1-214ENST00000550008 TTC22Q5TAA0 569 aa17.99■□□□□ 0.47
CUX1-214ENST00000550008 GOLGA6L19H0YKK7 550 aa17.99■□□□□ 0.47
CUX1-214ENST00000550008 PIP4K2BP78356 416 aa17.99■□□□□ 0.47
CUX1-214ENST00000550008 ORAI2Q96SN7 254 aa17.99■□□□□ 0.47
CUX1-214ENST00000550008 PHAXQ9H814 394 aaKnown RBP17.99■□□□□ 0.47
CUX1-214ENST00000550008 LARP1Q6PKG0 1096 aaKnown RBP17.98■□□□□ 0.47
CUX1-214ENST00000550008 SMC5Q8IY18 1101 aa17.98■□□□□ 0.47
CUX1-214ENST00000550008 ATP2B1P20020 1258 aa17.98■□□□□ 0.47
CUX1-214ENST00000550008 A0A087WZG4 1122 aa17.98■□□□□ 0.47
CUX1-214ENST00000550008 AKAP17AQ02040 695 aaKnown RBP17.98■□□□□ 0.47
CUX1-214ENST00000550008 RRP12Q5JTH9 1297 aaKnown RBP17.98■□□□□ 0.47
CUX1-214ENST00000550008 UBE3BQ7Z3V4 1068 aa17.98■□□□□ 0.47
CUX1-214ENST00000550008 TNPO1Q92973 898 aaKnown RBP17.98■□□□□ 0.47
CUX1-214ENST00000550008 ZBTB7BO15156 539 aaPredicted RBP17.98■□□□□ 0.47
CUX1-214ENST00000550008 PREX2Q70Z35 1606 aa17.97■□□□□ 0.47
CUX1-214ENST00000550008 GLRX3O76003 335 aaKnown RBP17.97■□□□□ 0.47
CUX1-214ENST00000550008 ADAMTS2O95450 1211 aa17.97■□□□□ 0.47
CUX1-214ENST00000550008 CEP126Q9P2H0 1117 aa17.97■□□□□ 0.47
CUX1-214ENST00000550008 FLT4P35916 1363 aa17.97■□□□□ 0.47
CUX1-214ENST00000550008 BCL11BQ9C0K0 894 aaPredicted RBP17.97■□□□□ 0.47
CUX1-214ENST00000550008 BLOC1S2Q6QNY1 142 aa17.97■□□□□ 0.47
CUX1-214ENST00000550008 GDPD2Q9HCC8 539 aa17.96■□□□□ 0.47
CUX1-214ENST00000550008 TTC39AQ5SRH9 613 aa17.96■□□□□ 0.47
CUX1-214ENST00000550008 RAD21O60216 631 aa17.96■□□□□ 0.47
CUX1-214ENST00000550008 GCP02774 474 aa17.96■□□□□ 0.47
CUX1-214ENST00000550008 HOXC9P31274 260 aa17.96■□□□□ 0.47
CUX1-214ENST00000550008 PA2G4Q9UQ80 394 aaKnown RBP17.96■□□□□ 0.47
CUX1-214ENST00000550008 PPFIA3O75145 1194 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 CCDC83Q8IWF9 413 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 PDRG1Q9NUG6 133 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 BCORL1Q5H9F3 1711 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 PDE1AP54750 535 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 CEP85Q6P2H3 762 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 GPTP24298 496 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 DDX11Q96FC9 970 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 CWC22Q9HCG8 908 aaKnown RBP17.95■□□□□ 0.46
CUX1-214ENST00000550008 TBX22Q9Y458 520 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 PRDM15P57071 1507 aaPredicted RBP17.95■□□□□ 0.46
CUX1-214ENST00000550008 KDM5DQ9BY66 1539 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 CCDC158Q5M9N0 1113 aa17.95■□□□□ 0.46
CUX1-214ENST00000550008 TRIM29Q14134 588 aa17.94■□□□□ 0.46
CUX1-214ENST00000550008 CWF19L2Q2TBE0 894 aaKnown RBP17.94■□□□□ 0.46
CUX1-214ENST00000550008 LARP1BQ659C4 914 aaKnown RBP17.94■□□□□ 0.46
CUX1-214ENST00000550008 CHMP4CQ96CF2 233 aa17.94■□□□□ 0.46
CUX1-214ENST00000550008 METP08581 1390 aa17.94■□□□□ 0.46
CUX1-214ENST00000550008 HIP1O00291 1037 aa17.94■□□□□ 0.46
CUX1-214ENST00000550008 GRPEL1Q9HAV7 217 aa17.94■□□□□ 0.46
CUX1-214ENST00000550008 RHPN1Q8TCX5 695 aa17.94■□□□□ 0.46
CUX1-214ENST00000550008 DDX17Q92841 729 aaKnown RBP17.94■□□□□ 0.46
CUX1-214ENST00000550008 CIZ1Q9ULV3 898 aaPredicted RBP17.94■□□□□ 0.46
CUX1-214ENST00000550008 ZCCHC11Q5TAX3 1644 aaKnown RBP17.94■□□□□ 0.46
CUX1-214ENST00000550008 TMX4Q9H1E5 349 aaPredicted RBP17.93■□□□□ 0.46
CUX1-214ENST00000550008 BICDL1Q6ZP65 573 aa17.93■□□□□ 0.46
CUX1-214ENST00000550008 LRRIQ1Q96JM4 1722 aa17.93■□□□□ 0.46
CUX1-214ENST00000550008 COPS6Q7L5N1 327 aa17.93■□□□□ 0.46
CUX1-214ENST00000550008 PIK3R4Q99570 1358 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 RAB11FIP3O75154 756 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 NFATC2IPQ8NCF5 419 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 XAGE3Q8WTP9 111 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 TCEANC2Q96MN5 208 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 LGR6Q9HBX8 967 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 MEX3CQ5U5Q3 659 aaKnown RBP17.92■□□□□ 0.46
CUX1-214ENST00000550008 IFNL2Q8IZJ0 200 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 HYPKQ9NX55 129 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 MBD3O95983 291 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 TPM4P67936 248 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 SNRKQ9NRH2 765 aa17.92■□□□□ 0.46
CUX1-214ENST00000550008 DCTPP1Q9H773 170 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 TMOD3Q9NYL9 352 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 PES1O00541 588 aaKnown RBP17.91■□□□□ 0.46
CUX1-214ENST00000550008 CCDC73Q6ZRK6 1079 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 FMNL2Q96PY5 1086 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 TBC1D2BQ9UPU7 963 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 ZNF521Q96K83 1311 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 ZFYVE9O95405 1425 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 IDH1O75874 414 aaKnown RBP17.91■□□□□ 0.46
CUX1-214ENST00000550008 SDF4Q9BRK5 362 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 WDR33Q9C0J8 1336 aaKnown RBP17.91■□□□□ 0.46
CUX1-214ENST00000550008 SASS6Q6UVJ0 657 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 PLEKHM2Q8IWE5 1019 aa17.91■□□□□ 0.46
CUX1-214ENST00000550008 EDC4Q6P2E9 1401 aaKnown RBP17.9■□□□□ 0.46
CUX1-214ENST00000550008 SBNO2Q9Y2G9 1366 aa17.9■□□□□ 0.46
CUX1-214ENST00000550008 FAM43AQ8N2R8 423 aa17.9■□□□□ 0.46
CUX1-214ENST00000550008 MPHOSPH8Q99549 860 aa17.9■□□□□ 0.46
CUX1-214ENST00000550008 ECHDC1Q9NTX5 307 aa17.9■□□□□ 0.46
CUX1-214ENST00000550008 TRPM2O94759 1503 aa17.9■□□□□ 0.46
CUX1-214ENST00000550008 ZNF592Q92610 1267 aa17.89■□□□□ 0.46
CUX1-214ENST00000550008 SYCE3A1L190 88 aa17.89■□□□□ 0.45
CUX1-214ENST00000550008 CHL1O00533 1208 aa17.89■□□□□ 0.45
CUX1-214ENST00000550008 HSP90AA2PQ14568 343 aaPredicted RBP17.89■□□□□ 0.45
CUX1-214ENST00000550008 PDCP20941 246 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms