RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 FKBP4Q02790 459 aaKnown RBP eCLIP18.78■□□□□ 0.6
CUX1-211ENST00000546411 SLC39A6Q13433 755 aa18.78■□□□□ 0.6
CUX1-211ENST00000546411 LARP1BQ659C4 914 aaKnown RBP18.78■□□□□ 0.6
CUX1-211ENST00000546411 ZNF592Q92610 1267 aa18.78■□□□□ 0.6
CUX1-211ENST00000546411 MAP3K2Q9Y2U5 619 aa18.78■□□□□ 0.6
CUX1-211ENST00000546411 MYO5CQ9NQX4 1742 aa18.77■□□□□ 0.6
CUX1-211ENST00000546411 STK11IPQ8N1F8 1099 aa18.77■□□□□ 0.6
CUX1-211ENST00000546411 WDR33Q9C0J8 1336 aaKnown RBP18.77■□□□□ 0.59
CUX1-211ENST00000546411 PLEKHM2Q8IWE5 1019 aa18.77■□□□□ 0.59
CUX1-211ENST00000546411 PDRG1Q9NUG6 133 aa18.77■□□□□ 0.59
CUX1-211ENST00000546411 ESPNB1AK53 854 aa18.76■□□□□ 0.59
CUX1-211ENST00000546411 ATP5J2-PTCD1G3V325 749 aa18.76■□□□□ 0.59
CUX1-211ENST00000546411 GLRX3O76003 335 aaKnown RBP18.76■□□□□ 0.59
CUX1-211ENST00000546411 BLOC1S2Q6QNY1 142 aa18.76■□□□□ 0.59
CUX1-211ENST00000546411 NFXL1Q6ZNB6 911 aa18.76■□□□□ 0.59
CUX1-211ENST00000546411 DCTPP1Q9H773 170 aa18.76■□□□□ 0.59
CUX1-211ENST00000546411 DBF4Q9UBU7 674 aaPredicted RBP18.76■□□□□ 0.59
CUX1-211ENST00000546411 LRRFIP1Q32MZ4 808 aaKnown RBP18.76■□□□□ 0.59
CUX1-211ENST00000546411 TSPY26PQ9H489 355 aa18.76■□□□□ 0.59
CUX1-211ENST00000546411 PHAXQ9H814 394 aaKnown RBP18.76■□□□□ 0.59
CUX1-211ENST00000546411 PPFIA3O75145 1194 aa18.75■□□□□ 0.59
CUX1-211ENST00000546411 BAG4O95429 457 aaKnown RBP18.75■□□□□ 0.59
CUX1-211ENST00000546411 DDX11Q96FC9 970 aa18.75■□□□□ 0.59
CUX1-211ENST00000546411 CPLX2Q6PUV4 134 aaKnown RBP18.75■□□□□ 0.59
CUX1-211ENST00000546411 SASS6Q6UVJ0 657 aa18.75■□□□□ 0.59
CUX1-211ENST00000546411 RASSF8Q8NHQ8 419 aa18.75■□□□□ 0.59
CUX1-211ENST00000546411 SPC24Q8NBT2 197 aa18.74■□□□□ 0.59
CUX1-211ENST00000546411 RBM27Q9P2N5 1060 aaKnown RBP18.74■□□□□ 0.59
CUX1-211ENST00000546411 DTNBO60941 627 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 TCEANC2Q96MN5 208 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 ATP2B1P20020 1258 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 CDK11BP21127 795 aaKnown RBP18.73■□□□□ 0.59
CUX1-211ENST00000546411 RHPN1Q8TCX5 695 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 ANKRD24Q8TF21 1146 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 FMNL2Q96PY5 1086 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 SDF4Q9BRK5 362 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 TPM4P67936 248 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 KRT28Q7Z3Y7 464 aa18.73■□□□□ 0.59
CUX1-211ENST00000546411 PA2G4Q9UQ80 394 aaKnown RBP18.73■□□□□ 0.59
CUX1-211ENST00000546411 PREX2Q70Z35 1606 aa18.72■□□□□ 0.59
CUX1-211ENST00000546411 SYNE3Q6ZMZ3 975 aa18.72■□□□□ 0.59
CUX1-211ENST00000546411 CCDC73Q6ZRK6 1079 aa18.72■□□□□ 0.59
CUX1-211ENST00000546411 VPS37DQ86XT2 251 aa18.72■□□□□ 0.59
CUX1-211ENST00000546411 HIP1O00291 1037 aa18.72■□□□□ 0.59
CUX1-211ENST00000546411 CCDC173Q0VFZ6 552 aa18.72■□□□□ 0.59
CUX1-211ENST00000546411 ZGPATQ8N5A5 531 aaKnown RBP18.72■□□□□ 0.59
CUX1-211ENST00000546411 CABLES1Q8TDN4 633 aa18.71■□□□□ 0.59
CUX1-211ENST00000546411 RAB11FIP3O75154 756 aa18.71■□□□□ 0.59
CUX1-211ENST00000546411 XRCC6P12956 609 aaKnown RBP eCLIP18.71■□□□□ 0.59
CUX1-211ENST00000546411 PDCP20941 246 aa18.71■□□□□ 0.59
CUX1-211ENST00000546411 AMOTQ4VCS5 1084 aa18.71■□□□□ 0.59
CUX1-211ENST00000546411 PLEKHF1Q96S99 279 aa18.71■□□□□ 0.59
CUX1-211ENST00000546411 INSRP06213 1382 aa18.71■□□□□ 0.59
CUX1-211ENST00000546411 UBE3BQ7Z3V4 1068 aa18.7■□□□□ 0.58
CUX1-211ENST00000546411 CNNM1Q9NRU3 951 aa18.7■□□□□ 0.58
CUX1-211ENST00000546411 SBNO2Q9Y2G9 1366 aa18.7■□□□□ 0.58
CUX1-211ENST00000546411 LARP1Q6PKG0 1096 aaKnown RBP18.7■□□□□ 0.58
CUX1-211ENST00000546411 TMX3Q96JJ7 454 aa18.7■□□□□ 0.58
CUX1-211ENST00000546411 A0A087WZG4 1122 aa18.7■□□□□ 0.58
CUX1-211ENST00000546411 AKAP17AQ02040 695 aaKnown RBP18.7■□□□□ 0.58
CUX1-211ENST00000546411 ZBTB3Q9H5J0 574 aa18.7■□□□□ 0.58
CUX1-211ENST00000546411 LTKP29376 864 aa18.7■□□□□ 0.58
CUX1-211ENST00000546411 TRIM29Q14134 588 aa18.7■□□□□ 0.58
CUX1-211ENST00000546411 CWF19L2Q2TBE0 894 aaKnown RBP18.7■□□□□ 0.58
CUX1-211ENST00000546411 RRP12Q5JTH9 1297 aaKnown RBP18.7■□□□□ 0.58
CUX1-211ENST00000546411 KAT6BQ8WYB5 2073 aa18.69■□□□□ 0.58
CUX1-211ENST00000546411 MSH6P52701 1360 aa18.69■□□□□ 0.58
CUX1-211ENST00000546411 CCDC57Q2TAC2 916 aa18.69■□□□□ 0.58
CUX1-211ENST00000546411 PRDM15P57071 1507 aaPredicted RBP18.69■□□□□ 0.58
CUX1-211ENST00000546411 TTC21AQ8NDW8 1320 aa18.69■□□□□ 0.58
CUX1-211ENST00000546411 TRIM5Q9C035 493 aa18.69■□□□□ 0.58
CUX1-211ENST00000546411 FLT4P35916 1363 aa18.68■□□□□ 0.58
CUX1-211ENST00000546411 ECHDC1Q9NTX5 307 aa18.68■□□□□ 0.58
CUX1-211ENST00000546411 CEP126Q9P2H0 1117 aa18.68■□□□□ 0.58
CUX1-211ENST00000546411 ZFYVE9O95405 1425 aa18.68■□□□□ 0.58
CUX1-211ENST00000546411 CHL1O00533 1208 aa18.68■□□□□ 0.58
CUX1-211ENST00000546411 CAMK4Q16566 473 aa18.68■□□□□ 0.58
CUX1-211ENST00000546411 MTMR7Q9Y216 660 aa18.68■□□□□ 0.58
CUX1-211ENST00000546411 PIK3R4Q99570 1358 aa18.68■□□□□ 0.58
CUX1-211ENST00000546411 PES1O00541 588 aaKnown RBP18.67■□□□□ 0.58
CUX1-211ENST00000546411 TTC39AQ5SRH9 613 aa18.67■□□□□ 0.58
CUX1-211ENST00000546411 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.67■□□□□ 0.58
CUX1-211ENST00000546411 TRPM2O94759 1503 aa18.67■□□□□ 0.58
CUX1-211ENST00000546411 ATP8B2P98198 1209 aa18.67■□□□□ 0.58
CUX1-211ENST00000546411 KRT85P78386 507 aa18.67■□□□□ 0.58
CUX1-211ENST00000546411 RBM10P98175 930 aaKnown RBP18.67■□□□□ 0.58
CUX1-211ENST00000546411 ESYT1Q9BSJ8 1104 aa18.67■□□□□ 0.58
CUX1-211ENST00000546411 CCDC158Q5M9N0 1113 aa18.66■□□□□ 0.58
CUX1-211ENST00000546411 KIF6Q6ZMV9 814 aa18.66■□□□□ 0.58
CUX1-211ENST00000546411 HOXC9P31274 260 aa18.66■□□□□ 0.58
CUX1-211ENST00000546411 VSIG10Q8N0Z9 540 aa18.66■□□□□ 0.58
CUX1-211ENST00000546411 CCDC39Q9UFE4 941 aa18.66■□□□□ 0.58
CUX1-211ENST00000546411 LGR6Q9HBX8 967 aa18.66■□□□□ 0.58
CUX1-211ENST00000546411 KDM5AP29375 1690 aaKnown RBP18.65■□□□□ 0.58
CUX1-211ENST00000546411 CHD1O14646 1710 aa18.65■□□□□ 0.58
CUX1-211ENST00000546411 TFIP11Q9UBB9 837 aaKnown RBP18.65■□□□□ 0.58
CUX1-211ENST00000546411 COPS6Q7L5N1 327 aa18.65■□□□□ 0.58
CUX1-211ENST00000546411 NECAB1Q8N987 351 aa18.65■□□□□ 0.58
CUX1-211ENST00000546411 SNRKQ9NRH2 765 aa18.65■□□□□ 0.58
CUX1-211ENST00000546411 EDC4Q6P2E9 1401 aaKnown RBP18.64■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms