RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF784Q8NCA9 323 aaPredicted RBP11.66□□□□□ -0.54
USP28-215ENST00000545608 NLGN2Q8NFZ4 835 aa11.66□□□□□ -0.54
USP28-215ENST00000545608 SMARCC1Q92922 1105 aaPredicted RBP11.66□□□□□ -0.54
USP28-215ENST00000545608 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.66□□□□□ -0.543e-6■□□□□ 9.2
USP28-215ENST00000545608 SMIM5Q71RC9 77 aa11.65□□□□□ -0.54
USP28-215ENST00000545608 AMIGO3Q86WK7 504 aa11.65□□□□□ -0.54
USP28-215ENST00000545608 CCER1Q8TC90 406 aaPredicted RBP11.65□□□□□ -0.54
USP28-215ENST00000545608 QSER1Q2KHR3 1735 aa11.65□□□□□ -0.54
USP28-215ENST00000545608 PHKG2P15735 406 aa11.64□□□□□ -0.55
USP28-215ENST00000545608 IFNL2Q8IZJ0 200 aa11.64□□□□□ -0.55
USP28-215ENST00000545608 PELP1Q8IZL8 1130 aaKnown RBP11.64□□□□□ -0.55
USP28-215ENST00000545608 TUBGCP6Q96RT7 1819 aa11.64□□□□□ -0.55
USP28-215ENST00000545608 LOC102724428A0A0B4J2F2 783 aa11.63□□□□□ -0.55
USP28-215ENST00000545608 HMGB2P26583 209 aaKnown RBP11.63□□□□□ -0.55
USP28-215ENST00000545608 SIK1P57059 783 aa11.63□□□□□ -0.55
USP28-215ENST00000545608 FLAD1Q8NFF5 587 aa11.63□□□□□ -0.55
USP28-215ENST00000545608 TMOD3Q9NYL9 352 aa11.63□□□□□ -0.55
USP28-215ENST00000545608 ASAP1Q9ULH1 1129 aa11.63□□□□□ -0.55
USP28-215ENST00000545608 COL24A1Q17RW2 1714 aa11.63□□□□□ -0.55
USP28-215ENST00000545608 LINC00116Q8NCU8 138 aa11.62□□□□□ -0.55
USP28-215ENST00000545608 AK7Q96M32 723 aa11.62□□□□□ -0.55
USP28-215ENST00000545608 ZBTB47Q9UFB7 747 aaPredicted RBP11.62□□□□□ -0.55
USP28-215ENST00000545608 PKD1L3Q7Z443 1732 aa11.62□□□□□ -0.55
USP28-215ENST00000545608 ANKRD26Q9UPS8 1709 aa11.62□□□□□ -0.55
USP28-215ENST00000545608 TOGARAM1Q9Y4F4 1720 aa11.62□□□□□ -0.55
USP28-215ENST00000545608 IGSF1Q8N6C5 1336 aa11.61□□□□□ -0.55
USP28-215ENST00000545608 MAP2P11137 1827 aaKnown RBP11.61□□□□□ -0.55
USP28-215ENST00000545608 PHF14O94880 888 aa11.61□□□□□ -0.55
USP28-215ENST00000545608 ITPK1Q13572 414 aa11.61□□□□□ -0.55
USP28-215ENST00000545608 MORC1Q86VD1 984 aa11.61□□□□□ -0.55
USP28-215ENST00000545608 ATG3Q9NT62 314 aa11.61□□□□□ -0.55
USP28-215ENST00000545608 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.61□□□□□ -0.55
USP28-215ENST00000545608 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.6□□□□□ -0.55
USP28-215ENST00000545608 YBX3P16989 372 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP28-215ENST00000545608 ATP6V1AP38606 617 aa11.6□□□□□ -0.55
USP28-215ENST00000545608 C5P01031 1676 aa11.59□□□□□ -0.55
USP28-215ENST00000545608 ITGB4P16144 1822 aa11.59□□□□□ -0.55
USP28-215ENST00000545608 CACNB1Q02641 598 aaPredicted RBP11.59□□□□□ -0.55
USP28-215ENST00000545608 PLEKHO1Q53GL0 409 aaPredicted RBP11.59□□□□□ -0.55
USP28-215ENST00000545608 AEBP1Q8IUX7 1158 aa11.59□□□□□ -0.55
USP28-215ENST00000545608 CD2APQ9Y5K6 639 aa11.59□□□□□ -0.55
USP28-215ENST00000545608 C4BP0C0L5 1744 aa11.58□□□□□ -0.56
USP28-215ENST00000545608 ERVV-2B6SEH9 535 aa11.58□□□□□ -0.56
USP28-215ENST00000545608 SSFA2P28290 1259 aa11.58□□□□□ -0.56
USP28-215ENST00000545608 SLC4A9Q96Q91 983 aa11.58□□□□□ -0.56
USP28-215ENST00000545608 KNSTRNQ9Y448 316 aa11.58□□□□□ -0.56
USP28-215ENST00000545608 GNPATO15228 680 aa11.57□□□□□ -0.56
USP28-215ENST00000545608 GRIN3BO60391 1043 aa11.57□□□□□ -0.56
USP28-215ENST00000545608 ZNF530Q6P9A1 599 aaPredicted RBP11.57□□□□□ -0.56
USP28-215ENST00000545608 BBXQ8WY36 941 aaPredicted RBP11.57□□□□□ -0.56
USP28-215ENST00000545608 DCAF5Q96JK2 942 aa11.57□□□□□ -0.56
USP28-215ENST00000545608 TAF1LQ8IZX4 1826 aa11.57□□□□□ -0.56
USP28-215ENST00000545608 PLEKHG2Q9H7P9 1386 aa11.56□□□□□ -0.56
USP28-215ENST00000545608 HSP90AB1P08238 724 aaKnown RBP11.56□□□□□ -0.56
USP28-215ENST00000545608 IL13P35225 146 aa11.56□□□□□ -0.56
USP28-215ENST00000545608 CABP4P57796 275 aa11.56□□□□□ -0.56
USP28-215ENST00000545608 AMOTQ4VCS5 1084 aa11.56□□□□□ -0.56
USP28-215ENST00000545608 SULT6B1Q6IMI4 303 aa11.56□□□□□ -0.56
USP28-215ENST00000545608 RBM42Q9BTD8 480 aaKnown RBP11.56□□□□□ -0.56
USP28-215ENST00000545608 KDM6AO15550 1401 aaPredicted RBP11.55□□□□□ -0.56
USP28-215ENST00000545608 MTHFSP49914 203 aa11.55□□□□□ -0.56
USP28-215ENST00000545608 KIF7Q2M1P5 1343 aa11.55□□□□□ -0.56
USP28-215ENST00000545608 KDRP35968 1356 aa11.54□□□□□ -0.56
USP28-215ENST00000545608 CHD4Q14839 1912 aa11.54□□□□□ -0.56
USP28-215ENST00000545608 C1QTNF8P60827 252 aa11.54□□□□□ -0.56
USP28-215ENST00000545608 WWC3Q9ULE0 1092 aa11.54□□□□□ -0.56
USP28-215ENST00000545608 UBR3Q6ZT12 1888 aa11.53□□□□□ -0.56
USP28-215ENST00000545608 PER1O15534 1290 aaPredicted RBP11.53□□□□□ -0.56
USP28-215ENST00000545608 C1orf141Q5JVX7 400 aa11.53□□□□□ -0.56
USP28-215ENST00000545608 TRAPPC3LQ5T215 181 aa11.53□□□□□ -0.56
USP28-215ENST00000545608 RC3H1Q5TC82 1133 aaKnown RBP11.53□□□□□ -0.56
USP28-215ENST00000545608 NFATC2IPQ8NCF5 419 aa11.53□□□□□ -0.56
USP28-215ENST00000545608 ARHGEF1Q92888 912 aaKnown RBP11.53□□□□□ -0.56
USP28-215ENST00000545608 RTCBQ9Y3I0 505 aaKnown RBP11.53□□□□□ -0.56
USP28-215ENST00000545608 PTCD1O75127 700 aaKnown RBP11.52□□□□□ -0.57
USP28-215ENST00000545608 RPS6KA4O75676 772 aa11.52□□□□□ -0.57
USP28-215ENST00000545608 MMP10P09238 476 aa11.52□□□□□ -0.57
USP28-215ENST00000545608 VSIG10Q8N0Z9 540 aa11.52□□□□□ -0.57
USP28-215ENST00000545608 CIZ1Q9ULV3 898 aaPredicted RBP11.52□□□□□ -0.57
USP28-215ENST00000545608 CNTNAP4Q9C0A0 1308 aa11.51□□□□□ -0.57
USP28-215ENST00000545608 UTRNP46939 3433 aa11.5□□□□□ -0.57
USP28-215ENST00000545608 GIGYF1O75420 1035 aaPredicted RBP11.5□□□□□ -0.57
USP28-215ENST00000545608 HMOX1P09601 288 aa11.5□□□□□ -0.57
USP28-215ENST00000545608 GYS1P13807 737 aa11.5□□□□□ -0.57
USP28-215ENST00000545608 CC2D1BQ5T0F9 858 aaKnown RBP11.5□□□□□ -0.57
USP28-215ENST00000545608 NLGN1Q8N2Q7 840 aa11.5□□□□□ -0.57
USP28-215ENST00000545608 LGR6Q9HBX8 967 aa11.5□□□□□ -0.57
USP28-215ENST00000545608 SENP3-EIF4A1A0A087X0R7 540 aa11.49□□□□□ -0.57
USP28-215ENST00000545608 RGL2O15211 777 aa11.49□□□□□ -0.57
USP28-215ENST00000545608 RFC4P35249 363 aa11.49□□□□□ -0.57
USP28-215ENST00000545608 AKAP4Q5JQC9 854 aa11.49□□□□□ -0.57
USP28-215ENST00000545608 CRKLP46109 303 aaKnown RBP11.48□□□□□ -0.57
USP28-215ENST00000545608 ATP10DQ9P241 1426 aa11.47□□□□□ -0.57
USP28-215ENST00000545608 A0A0G2JLW4 131 aa11.47□□□□□ -0.57
USP28-215ENST00000545608 RNMTO43148 476 aaKnown RBP11.47□□□□□ -0.57
USP28-215ENST00000545608 DIAPH1O60610 1272 aaKnown RBP11.47□□□□□ -0.57
USP28-215ENST00000545608 TGFB2P61812 414 aa11.47□□□□□ -0.57
USP28-215ENST00000545608 CNGB1Q14028 1251 aaPredicted RBP11.47□□□□□ -0.57
USP28-215ENST00000545608 MTHFSDQ2M296 383 aaKnown RBP11.47□□□□□ -0.57
USP28-215ENST00000545608 INTS5Q6P9B9 1019 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms