RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 ATP6V1AP38606 617 aa17.69■□□□□ 0.42
DDX55-213ENST00000545042 SLC16A10Q8TF71 515 aa17.69■□□□□ 0.42
DDX55-213ENST00000545042 AK7Q96M32 723 aa17.69■□□□□ 0.42
DDX55-213ENST00000545042 RBM42Q9BTD8 480 aaKnown RBP17.69■□□□□ 0.42
DDX55-213ENST00000545042 ATF5Q9Y2D1 282 aaPredicted RBP17.69■□□□□ 0.42
DDX55-213ENST00000545042 PNPLA7Q6ZV29 1317 aa17.69■□□□□ 0.42
DDX55-213ENST00000545042 SCN11AQ9UI33 1791 aa17.68■□□□□ 0.42
DDX55-213ENST00000545042 NEFMP07197 916 aa17.68■□□□□ 0.42
DDX55-213ENST00000545042 SLC52A2Q9HAB3 445 aa17.68■□□□□ 0.42
DDX55-213ENST00000545042 LGR6Q9HBX8 967 aa17.68■□□□□ 0.42
DDX55-213ENST00000545042 MAP3K5Q99683 1374 aa17.67■□□□□ 0.42
DDX55-213ENST00000545042 QSER1Q2KHR3 1735 aa17.67■□□□□ 0.42
DDX55-213ENST00000545042 GNAT3A8MTJ3 354 aa17.67■□□□□ 0.42
DDX55-213ENST00000545042 MSH5O43196 834 aa17.67■□□□□ 0.42
DDX55-213ENST00000545042 FLAD1Q8NFF5 587 aa17.67■□□□□ 0.42
DDX55-213ENST00000545042 TAF1LQ8IZX4 1826 aa17.66■□□□□ 0.42
DDX55-213ENST00000545042 MYBBP1AQ9BQG0 1328 aaKnown RBP17.66■□□□□ 0.42
DDX55-213ENST00000545042 C4BP0C0L5 1744 aa17.65■□□□□ 0.42
DDX55-213ENST00000545042 LINC00116Q8NCU8 138 aa17.65■□□□□ 0.42
DDX55-213ENST00000545042 PHACTR3Q96KR7 559 aa17.65■□□□□ 0.42
DDX55-213ENST00000545042 PNNQ9H307 717 aaKnown RBP17.65■□□□□ 0.42
DDX55-213ENST00000545042 PTCD1O75127 700 aaKnown RBP17.64■□□□□ 0.41
DDX55-213ENST00000545042 TEFQ10587 303 aa17.64■□□□□ 0.41
DDX55-213ENST00000545042 ITPK1Q13572 414 aa17.64■□□□□ 0.41
DDX55-213ENST00000545042 MRC1P22897 1456 aa17.63■□□□□ 0.41
DDX55-213ENST00000545042 TUBGCP6Q96RT7 1819 aa17.63■□□□□ 0.41
DDX55-213ENST00000545042 POLD1P28340 1107 aa17.63■□□□□ 0.41
DDX55-213ENST00000545042 PTGER2P43116 358 aa17.63■□□□□ 0.41
DDX55-213ENST00000545042 COL23A1Q86Y22 540 aaPredicted RBP17.63■□□□□ 0.41
DDX55-213ENST00000545042 ZNF316A6NFI3 1004 aaPredicted RBP17.62■□□□□ 0.41
DDX55-213ENST00000545042 RTF1Q92541 710 aaKnown RBP17.62■□□□□ 0.41
DDX55-213ENST00000545042 ADAMTS7Q9UKP4 1686 aa17.61■□□□□ 0.41
DDX55-213ENST00000545042 VIRMAQ69YN4 1812 aaKnown RBP17.61■□□□□ 0.41
DDX55-213ENST00000545042 GNPATO15228 680 aa17.61■□□□□ 0.41
DDX55-213ENST00000545042 PHF14O94880 888 aa17.61■□□□□ 0.41
DDX55-213ENST00000545042 SSFA2P28290 1259 aa17.61■□□□□ 0.41
DDX55-213ENST00000545042 SLC4A9Q96Q91 983 aa17.61■□□□□ 0.41
DDX55-213ENST00000545042 ZNF831Q5JPB2 1677 aa17.61■□□□□ 0.41
DDX55-213ENST00000545042 TTC5Q8N0Z6 440 aa17.6■□□□□ 0.41
DDX55-213ENST00000545042 IL17REQ8NFR9 667 aa17.6■□□□□ 0.41
DDX55-213ENST00000545042 MAPK8IP3Q9UPT6 1336 aa17.59■□□□□ 0.41
DDX55-213ENST00000545042 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.59■□□□□ 0.41
DDX55-213ENST00000545042 SLC39A6Q13433 755 aa17.59■□□□□ 0.41
DDX55-213ENST00000545042 RC3H1Q5TC82 1133 aaKnown RBP17.59■□□□□ 0.41
DDX55-213ENST00000545042 ARXQ96QS3 562 aa17.59■□□□□ 0.41
DDX55-213ENST00000545042 SGIP1Q9BQI5 828 aa17.59■□□□□ 0.41
DDX55-213ENST00000545042 PRKRIP1Q9H875 184 aaPredicted RBP17.59■□□□□ 0.41
DDX55-213ENST00000545042 RTCBQ9Y3I0 505 aaKnown RBP17.59■□□□□ 0.41
DDX55-213ENST00000545042 CNTNAP4Q9C0A0 1308 aa17.58■□□□□ 0.4
DDX55-213ENST00000545042 HTATSF1O43719 755 aaKnown RBP17.58■□□□□ 0.4
DDX55-213ENST00000545042 CEMIPQ8WUJ3 1361 aa17.57■□□□□ 0.4
DDX55-213ENST00000545042 UBR3Q6ZT12 1888 aa17.57■□□□□ 0.4
DDX55-213ENST00000545042 WDR43Q15061 677 aaKnown RBP eCLIP17.56■□□□□ 0.4
DDX55-213ENST00000545042 TRAPPC3LQ5T215 181 aa17.56■□□□□ 0.4
DDX55-213ENST00000545042 PLEKHF1Q96S99 279 aa17.56■□□□□ 0.4
DDX55-213ENST00000545042 DCAF8L1A6NGE4 600 aa17.55■□□□□ 0.4
DDX55-213ENST00000545042 RPS6KA4O75676 772 aa17.55■□□□□ 0.4
DDX55-213ENST00000545042 ADRA2BP18089 450 aa17.55■□□□□ 0.4
DDX55-213ENST00000545042 CRKLP46109 303 aaKnown RBP17.55■□□□□ 0.4
DDX55-213ENST00000545042 MSL1Q68DK7 614 aa17.55■□□□□ 0.4
DDX55-213ENST00000545042 AMIGO3Q86WK7 504 aa17.55■□□□□ 0.4
DDX55-213ENST00000545042 VSIG10Q8N0Z9 540 aa17.55■□□□□ 0.4
DDX55-213ENST00000545042 COL5A3P25940 1745 aaPredicted RBP17.55■□□□□ 0.4
DDX55-213ENST00000545042 BTBD11A6QL63 1104 aa17.54■□□□□ 0.4
DDX55-213ENST00000545042 NFE2L2Q16236 605 aa17.54■□□□□ 0.4
DDX55-213ENST00000545042 ZNF790Q6PG37 636 aa17.54■□□□□ 0.4
DDX55-213ENST00000545042 SMIM5Q71RC9 77 aa17.54■□□□□ 0.4
DDX55-213ENST00000545042 MCM10Q7L590 875 aa17.54■□□□□ 0.4
DDX55-213ENST00000545042 DNAJC10Q8IXB1 793 aa17.54■□□□□ 0.4
DDX55-213ENST00000545042 FHDC1Q9C0D6 1143 aaPredicted RBP17.54■□□□□ 0.4
DDX55-213ENST00000545042 KCPQ6ZWJ8 1503 aa17.53■□□□□ 0.4
DDX55-213ENST00000545042 RFC4P35249 363 aa17.53■□□□□ 0.4
DDX55-213ENST00000545042 CICQ96RK0 1608 aaPredicted RBP17.53■□□□□ 0.4
DDX55-213ENST00000545042 KLHL34Q8N239 644 aa17.52■□□□□ 0.4
DDX55-213ENST00000545042 FMNL2Q96PY5 1086 aa17.52■□□□□ 0.4
DDX55-213ENST00000545042 SYT17Q9BSW7 474 aa17.52■□□□□ 0.4
DDX55-213ENST00000545042 CCDC87Q9NVE4 849 aa17.52■□□□□ 0.4
DDX55-213ENST00000545042 TJP1Q07157 1748 aa17.52■□□□□ 0.39
DDX55-213ENST00000545042 COL24A1Q17RW2 1714 aa17.52■□□□□ 0.39
DDX55-213ENST00000545042 SIPA1L3O60292 1781 aaPredicted RBP17.51■□□□□ 0.39
DDX55-213ENST00000545042 STARD3NLO95772 234 aa17.51■□□□□ 0.39
DDX55-213ENST00000545042 DCTN1Q14203 1278 aa17.51■□□□□ 0.39
DDX55-213ENST00000545042 TEX13AQ9BXU3 409 aaPredicted RBP17.51■□□□□ 0.39
DDX55-213ENST00000545042 CYP19A1P11511 503 aaPredicted RBP17.5■□□□□ 0.39
DDX55-213ENST00000545042 TAF7Q15545 349 aaPredicted RBP17.5■□□□□ 0.39
DDX55-213ENST00000545042 ARHGEF1Q92888 912 aaKnown RBP17.5■□□□□ 0.39
DDX55-213ENST00000545042 ZNF496Q96IT1 587 aaPredicted RBP17.5■□□□□ 0.39
DDX55-213ENST00000545042 UBR2Q8IWV8 1755 aa17.5■□□□□ 0.39
DDX55-213ENST00000545042 HEG1Q9ULI3 1381 aa17.5■□□□□ 0.39
DDX55-213ENST00000545042 INTS5Q6P9B9 1019 aaKnown RBP17.49■□□□□ 0.39
DDX55-213ENST00000545042 MYH14Q7Z406 1995 aaKnown RBP17.49■□□□□ 0.39
DDX55-213ENST00000545042 ANP32CO43423 234 aa17.48■□□□□ 0.39
DDX55-213ENST00000545042 LMOD3Q0VAK6 560 aa17.48■□□□□ 0.39
DDX55-213ENST00000545042 NLGN1Q8N2Q7 840 aa17.48■□□□□ 0.39
DDX55-213ENST00000545042 PNISRQ8TF01 805 aaKnown RBP17.48■□□□□ 0.39
DDX55-213ENST00000545042 RIPK4P57078 832 aa17.47■□□□□ 0.39
DDX55-213ENST00000545042 CCDC146Q8IYE0 955 aa17.47■□□□□ 0.39
DDX55-213ENST00000545042 RUNDC1Q96C34 613 aa17.47■□□□□ 0.39
DDX55-213ENST00000545042 DLG5Q8TDM6 1919 aa17.47■□□□□ 0.39
DDX55-213ENST00000545042 KCNQ3O43525 872 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms