RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-210	ENST00000542817	LMOD3	Q0VAK6	560 aa		14.02	□□□□□ -0.17
NPIPB3-210	ENST00000542817	NGEF	Q8N5V2	710 aa		14.02	□□□□□ -0.17
NPIPB3-210	ENST00000542817	RTF1	Q92541	710 aa	Known RBP	14.02	□□□□□ -0.17
NPIPB3-210	ENST00000542817	BCL11B	Q9C0K0	894 aa	Predicted RBP	14.02	□□□□□ -0.17
NPIPB3-210	ENST00000542817	MIS18A	Q9NYP9	233 aa		14.02	□□□□□ -0.17
NPIPB3-210	ENST00000542817	CABP4	P57796	275 aa		14.01	□□□□□ -0.17
NPIPB3-210	ENST00000542817	ATG3	Q9NT62	314 aa		14.01	□□□□□ -0.17
NPIPB3-210	ENST00000542817	ASAP1	Q9ULH1	1129 aa		14.01	□□□□□ -0.17
NPIPB3-210	ENST00000542817	PAPPA	Q13219	1627 aa		14.01	□□□□□ -0.17
NPIPB3-210	ENST00000542817	SLC39A6	Q13433	755 aa		14	□□□□□ -0.17
NPIPB3-210	ENST00000542817	TAF7	Q15545	349 aa	Predicted RBP	14	□□□□□ -0.17
NPIPB3-210	ENST00000542817	WDR63	Q8IWG1	891 aa		14	□□□□□ -0.17
NPIPB3-210	ENST00000542817	CDCA7L	Q96GN5	454 aa		14	□□□□□ -0.17
NPIPB3-210	ENST00000542817	SLC4A9	Q96Q91	983 aa		14	□□□□□ -0.17
NPIPB3-210	ENST00000542817	TNS1	Q9HBL0	1735 aa	Known RBP	14	□□□□□ -0.17
NPIPB3-210	ENST00000542817	TRMT2A	Q8IZ69	625 aa	Known RBP	13.99	□□□□□ -0.17
NPIPB3-210	ENST00000542817	CFAP44	Q96MT7	982 aa		13.99	□□□□□ -0.17
NPIPB3-210	ENST00000542817	TMOD3	Q9NYL9	352 aa		13.99	□□□□□ -0.17
NPIPB3-210	ENST00000542817	IL16	Q14005	1332 aa		13.99	□□□□□ -0.17
NPIPB3-210	ENST00000542817	ZBED9	Q6R2W3	1325 aa		13.99	□□□□□ -0.17
NPIPB3-210	ENST00000542817	KCP	Q6ZWJ8	1503 aa		13.99	□□□□□ -0.17
NPIPB3-210	ENST00000542817	BTAF1	O14981	1849 aa		13.99	□□□□□ -0.17
NPIPB3-210	ENST00000542817	HEG1	Q9ULI3	1381 aa		13.98	□□□□□ -0.17
NPIPB3-210	ENST00000542817	PROM2	Q8N271	834 aa		13.98	□□□□□ -0.17
NPIPB3-210	ENST00000542817	SYTL4	Q96C24	671 aa	Predicted RBP	13.98	□□□□□ -0.17
NPIPB3-210	ENST00000542817	IFT57	Q9NWB7	429 aa		13.98	□□□□□ -0.17
NPIPB3-210	ENST00000542817	KAT6B	Q8WYB5	2073 aa		13.98	□□□□□ -0.17
NPIPB3-210	ENST00000542817	KDM3B	Q7LBC6	1761 aa		13.98	□□□□□ -0.17
NPIPB3-210	ENST00000542817	TEF	Q10587	303 aa		13.97	□□□□□ -0.17
NPIPB3-210	ENST00000542817	MBIP	Q9NS73	344 aa		13.97	□□□□□ -0.17
NPIPB3-210	ENST00000542817	BABAM1	Q9NWV8	329 aa		13.97	□□□□□ -0.17
NPIPB3-210	ENST00000542817	BTBD11	A6QL63	1104 aa		13.96	□□□□□ -0.17
NPIPB3-210	ENST00000542817	SLFN5	Q08AF3	891 aa		13.96	□□□□□ -0.17
NPIPB3-210	ENST00000542817	ZNF790	Q6PG37	636 aa		13.96	□□□□□ -0.17
NPIPB3-210	ENST00000542817	UBR2	Q8IWV8	1755 aa		13.96	□□□□□ -0.17
NPIPB3-210	ENST00000542817	EIF4A1	P60842	406 aa	Known RBP	13.95	□□□□□ -0.18
NPIPB3-210	ENST00000542817	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
NPIPB3-210	ENST00000542817	TSR2	Q969E8	191 aa	Known RBP	13.95	□□□□□ -0.18
NPIPB3-210	ENST00000542817	PALLD	Q8WX93	1383 aa		13.95	□□□□□ -0.18
NPIPB3-210	ENST00000542817	FANCI	Q9NVI1	1328 aa		13.94	□□□□□ -0.18
NPIPB3-210	ENST00000542817	GNAI1	P63096	354 aa		13.94	□□□□□ -0.18
NPIPB3-210	ENST00000542817	GOLGA2	Q08379	1002 aa		13.94	□□□□□ -0.18
NPIPB3-210	ENST00000542817	KRT24	Q2M2I5	525 aa		13.94	□□□□□ -0.18
NPIPB3-210	ENST00000542817	DUSP27	Q5VZP5	1158 aa		13.94	□□□□□ -0.18
NPIPB3-210	ENST00000542817	ZNF496	Q96IT1	587 aa	Predicted RBP	13.94	□□□□□ -0.18
NPIPB3-210	ENST00000542817	PRAMEF22	A3QJZ6	481 aa		13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	PLSCR1	O15162	318 aa		13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	CALD1	Q05682	793 aa	Known RBP	13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	YTHDC1	Q96MU7	727 aa	Known RBP	13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	CAMKK2	Q96RR4	588 aa		13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	LRRC4B	Q9NT99	713 aa		13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	TSPYL4	Q9UJ04	414 aa		13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	LAS1L	Q9Y4W2	734 aa	Known RBP	13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	LY75	O60449	1722 aa		13.93	□□□□□ -0.18
NPIPB3-210	ENST00000542817	APBA3	O96018	575 aa		13.92	□□□□□ -0.18
NPIPB3-210	ENST00000542817	KCNQ4	P56696	695 aa		13.92	□□□□□ -0.18
NPIPB3-210	ENST00000542817	ITPK1	Q13572	414 aa		13.92	□□□□□ -0.18
NPIPB3-210	ENST00000542817	DEFB132	Q7Z7B7	95 aa		13.92	□□□□□ -0.18
NPIPB3-210	ENST00000542817	C8orf58	Q8NAV2	365 aa		13.92	□□□□□ -0.18
NPIPB3-210	ENST00000542817	LOC102724428	A0A0B4J2F2	783 aa		13.91	□□□□□ -0.18
NPIPB3-210	ENST00000542817		E9PSI1	815 aa		13.91	□□□□□ -0.18
NPIPB3-210	ENST00000542817	PTCD1	O75127	700 aa	Known RBP	13.91	□□□□□ -0.18
NPIPB3-210	ENST00000542817	SIK1	P57059	783 aa		13.91	□□□□□ -0.18
NPIPB3-210	ENST00000542817	TSPYL6	Q8N831	410 aa		13.91	□□□□□ -0.18
NPIPB3-210	ENST00000542817	CIC	Q96RK0	1608 aa	Predicted RBP	13.91	□□□□□ -0.18
NPIPB3-210	ENST00000542817	GIGYF1	O75420	1035 aa	Predicted RBP	13.9	□□□□□ -0.18
NPIPB3-210	ENST00000542817	SMARCC1	Q92922	1105 aa	Predicted RBP	13.9	□□□□□ -0.18
NPIPB3-210	ENST00000542817	ZNF831	Q5JPB2	1677 aa		13.9	□□□□□ -0.18
NPIPB3-210	ENST00000542817	TJP1	Q07157	1748 aa		13.9	□□□□□ -0.18
NPIPB3-210	ENST00000542817	EN1	Q05925	392 aa	Predicted RBP	13.9	□□□□□ -0.19
NPIPB3-210	ENST00000542817	TXNRD1	Q16881	649 aa		13.9	□□□□□ -0.19
NPIPB3-210	ENST00000542817	CCDC125	Q86Z20	511 aa		13.9	□□□□□ -0.19
NPIPB3-210	ENST00000542817	VSIG10	Q8N0Z9	540 aa		13.9	□□□□□ -0.19
NPIPB3-210	ENST00000542817	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	RGPD4	Q7Z3J3	1758 aa		13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	SRCAP	Q6ZRS2	3230 aa		13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	EXOSC9	Q06265	439 aa	Known RBP	13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	EZH2	Q15910	746 aa	Known RBP	13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	DNAJC10	Q8IXB1	793 aa		13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	LINC00116	Q8NCU8	138 aa		13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	FMNL2	Q96PY5	1086 aa		13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	USP16	Q9Y5T5	823 aa		13.89	□□□□□ -0.19
NPIPB3-210	ENST00000542817	C5	P01031	1676 aa		13.88	□□□□□ -0.19
NPIPB3-210	ENST00000542817	AMIGO3	Q86WK7	504 aa		13.88	□□□□□ -0.19
NPIPB3-210	ENST00000542817	TTC5	Q8N0Z6	440 aa		13.88	□□□□□ -0.19
NPIPB3-210	ENST00000542817	RBM42	Q9BTD8	480 aa	Known RBP	13.88	□□□□□ -0.19
NPIPB3-210	ENST00000542817	MYH16	Q9H6N6	1097 aa		13.88	□□□□□ -0.19
NPIPB3-210	ENST00000542817	VAMP4	O75379	141 aa		13.87	□□□□□ -0.19
NPIPB3-210	ENST00000542817	CYP19A1	P11511	503 aa	Predicted RBP	13.87	□□□□□ -0.19
NPIPB3-210	ENST00000542817	RREB1	Q92766	1687 aa		13.86	□□□□□ -0.19
NPIPB3-210	ENST00000542817	SNRPA1	P09661	255 aa	Known RBP	13.86	□□□□□ -0.19
NPIPB3-210	ENST00000542817	ATP6V1A	P38606	617 aa		13.86	□□□□□ -0.19
NPIPB3-210	ENST00000542817	PDIA6	Q15084	440 aa		13.86	□□□□□ -0.19
NPIPB3-210	ENST00000542817	SLC27A3	Q5K4L6	730 aa		13.86	□□□□□ -0.19
NPIPB3-210	ENST00000542817	INTS5	Q6P9B9	1019 aa	Known RBP	13.86	□□□□□ -0.19
NPIPB3-210	ENST00000542817	LRP10	Q7Z4F1	713 aa		13.86	□□□□□ -0.19
NPIPB3-210	ENST00000542817	CCNL1	Q9UK58	526 aa	Predicted RBP	13.86	□□□□□ -0.19
NPIPB3-210	ENST00000542817	COL5A3	P25940	1745 aa	Predicted RBP	13.85	□□□□□ -0.19
NPIPB3-210	ENST00000542817	MYH14	Q7Z406	1995 aa	Known RBP	13.85	□□□□□ -0.19
NPIPB3-210	ENST00000542817	TAF1L	Q8IZX4	1826 aa		13.85	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms