RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 KDM6AO15550 1401 aaPredicted RBP36.04■■■■□ 3.36
CCM2-218ENST00000541586 HTATSF1O43719 755 aaKnown RBP36.03■■■■□ 3.36
CCM2-218ENST00000541586 TRIM37O94972 964 aa36.02■■■■□ 3.36
CCM2-218ENST00000541586 CABP4P57796 275 aa36.02■■■■□ 3.36
CCM2-218ENST00000541586 CALD1Q05682 793 aaKnown RBP36■■■■□ 3.35
CCM2-218ENST00000541586 NFATC2IPQ8NCF5 419 aa36■■■■□ 3.35
CCM2-218ENST00000541586 FANCIQ9NVI1 1328 aa36■■■■□ 3.35
CCM2-218ENST00000541586 ERVV-2B6SEH9 535 aa36■■■■□ 3.35
CCM2-218ENST00000541586 PTF1AQ7RTS3 328 aa36■■■■□ 3.35
CCM2-218ENST00000541586 TEFQ10587 303 aa35.99■■■■□ 3.35
CCM2-218ENST00000541586 TSR2Q969E8 191 aaKnown RBP35.99■■■■□ 3.35
CCM2-218ENST00000541586 RRP1P56182 461 aaKnown RBP35.98■■■■□ 3.35
CCM2-218ENST00000541586 TMOD3Q9NYL9 352 aa35.97■■■■□ 3.35
CCM2-218ENST00000541586 BCL9O00512 1426 aa35.96■■■■□ 3.35
CCM2-218ENST00000541586 SLC52A2Q9HAB3 445 aa35.95■■■■□ 3.35
CCM2-218ENST00000541586 PIGBQ92521 554 aa35.94■■■■□ 3.34
CCM2-218ENST00000541586 BCL11BQ9C0K0 894 aaPredicted RBP35.93■■■■□ 3.34
CCM2-218ENST00000541586 CEMIPQ8WUJ3 1361 aa35.93■■■■□ 3.34
CCM2-218ENST00000541586 DOT1LQ8TEK3 1739 aa35.93■■■■□ 3.34
CCM2-218ENST00000541586 IFT57Q9NWB7 429 aa35.92■■■■□ 3.34
CCM2-218ENST00000541586 LAS1LQ9Y4W2 734 aaKnown RBP35.91■■■■□ 3.34
CCM2-218ENST00000541586 SCN11AQ9UI33 1791 aa35.91■■■■□ 3.34
CCM2-218ENST00000541586 TOGARAM1Q9Y4F4 1720 aa35.91■■■■□ 3.34
CCM2-218ENST00000541586 ZNF853P0CG23 659 aa35.9■■■■□ 3.34
CCM2-218ENST00000541586 GNAI1P63096 354 aa35.9■■■■□ 3.34
CCM2-218ENST00000541586 MIS18AQ9NYP9 233 aa35.88■■■■□ 3.34
CCM2-218ENST00000541586 VIRMAQ69YN4 1812 aaKnown RBP35.88■■■■□ 3.33
CCM2-218ENST00000541586 SBF2Q86WG5 1849 aa35.88■■■■□ 3.33
CCM2-218ENST00000541586 CFAP44Q96MT7 982 aa35.88■■■■□ 3.33
CCM2-218ENST00000541586 EXOSC9Q06265 439 aaKnown RBP35.87■■■■□ 3.33
CCM2-218ENST00000541586 TAF7Q15545 349 aaPredicted RBP35.87■■■■□ 3.33
CCM2-218ENST00000541586 BTBD11A6QL63 1104 aa35.86■■■■□ 3.33
CCM2-218ENST00000541586 ITGB4P16144 1822 aa35.85■■■■□ 3.33
CCM2-218ENST00000541586 APBA3O96018 575 aa35.85■■■■□ 3.33
CCM2-218ENST00000541586 SLC39A6Q13433 755 aa35.85■■■■□ 3.33
CCM2-218ENST00000541586 ERICH6BQ5W0A0 696 aa35.85■■■■□ 3.33
CCM2-218ENST00000541586 ASAP1Q9ULH1 1129 aa35.85■■■■□ 3.33
CCM2-218ENST00000541586 SF3B2Q13435 895 aaKnown RBP35.84■■■■□ 3.33
CCM2-218ENST00000541586 ADAMTS7Q9UKP4 1686 aa35.83■■■■□ 3.33
CCM2-218ENST00000541586 PLIN1O60240 522 aa35.83■■■■□ 3.33
CCM2-218ENST00000541586 MBIPQ9NS73 344 aa35.83■■■■□ 3.33
CCM2-218ENST00000541586 CT47B1P0C2W7 299 aaPredicted RBP35.83■■■■□ 3.33
CCM2-218ENST00000541586 BCAR3O75815 825 aa35.82■■■■□ 3.32
CCM2-218ENST00000541586 NHSQ6T4R5 1651 aa35.81■■■■□ 3.32
CCM2-218ENST00000541586 RARSP54136 660 aaKnown RBP35.8■■■■□ 3.32
CCM2-218ENST00000541586 ATG3Q9NT62 314 aa35.8■■■■□ 3.32
CCM2-218ENST00000541586 TSPYL4Q9UJ04 414 aa35.78■■■■□ 3.32
CCM2-218ENST00000541586 MRC1P22897 1456 aa35.78■■■■□ 3.32
CCM2-218ENST00000541586 KCNQ3O43525 872 aa35.77■■■■□ 3.32
CCM2-218ENST00000541586 TTC5Q8N0Z6 440 aa35.77■■■■□ 3.32
CCM2-218ENST00000541586 UPF1Q92900 1129 aaKnown RBP eCLIP35.77■■■■□ 3.32
CCM2-218ENST00000541586 CHL1O00533 1208 aa35.76■■■■□ 3.31
CCM2-218ENST00000541586 PTCD1O75127 700 aaKnown RBP35.76■■■■□ 3.31
CCM2-218ENST00000541586 GOLGA6L2Q8N9W4 650 aaPredicted RBP35.76■■■■□ 3.31
CCM2-218ENST00000541586 ZNF790Q6PG37 636 aa35.75■■■■□ 3.31
CCM2-218ENST00000541586 RBM42Q9BTD8 480 aaKnown RBP35.74■■■■□ 3.31
CCM2-218ENST00000541586 BTAF1O14981 1849 aa35.74■■■■□ 3.31
CCM2-218ENST00000541586 CCDC125Q86Z20 511 aa35.74■■■■□ 3.31
CCM2-218ENST00000541586 SMARCC1Q92922 1105 aaPredicted RBP35.74■■■■□ 3.31
CCM2-218ENST00000541586 PALLDQ8WX93 1383 aa35.71■■■■□ 3.31
CCM2-218ENST00000541586 EN1Q05925 392 aaPredicted RBP35.71■■■■□ 3.31
CCM2-218ENST00000541586 DEFB132Q7Z7B7 95 aa35.71■■■■□ 3.31
CCM2-218ENST00000541586 SIPA1L3O60292 1781 aaPredicted RBP35.7■■■■□ 3.31
CCM2-218ENST00000541586 BAG6P46379 1132 aa35.69■■■■□ 3.3
CCM2-218ENST00000541586 PLSCR1O15162 318 aa35.69■■■■□ 3.3
CCM2-218ENST00000541586 BCL2L13Q9BXK5 485 aa35.69■■■■□ 3.3
CCM2-218ENST00000541586 KCNQ4P56696 695 aa35.68■■■■□ 3.3
CCM2-218ENST00000541586 BABAM1Q9NWV8 329 aa35.68■■■■□ 3.3
CCM2-218ENST00000541586 C20orf194Q5TEA3 1177 aa35.67■■■■□ 3.3
CCM2-218ENST00000541586 TSPYL6Q8N831 410 aa35.67■■■■□ 3.3
CCM2-218ENST00000541586 ZNF496Q96IT1 587 aaPredicted RBP35.67■■■■□ 3.3
CCM2-218ENST00000541586 C8orf58Q8NAV2 365 aa35.66■■■■□ 3.3
CCM2-218ENST00000541586 PPP4R2Q9NY27 417 aa35.66■■■■□ 3.3
CCM2-218ENST00000541586 LOC102724428A0A0B4J2F2 783 aa35.65■■■■□ 3.3
CCM2-218ENST00000541586 VAMP4O75379 141 aa35.65■■■■□ 3.3
CCM2-218ENST00000541586 SIK1P57059 783 aa35.65■■■■□ 3.3
CCM2-218ENST00000541586 EZH2Q15910 746 aaKnown RBP35.65■■■■□ 3.3
CCM2-218ENST00000541586 TNS1Q9HBL0 1735 aaKnown RBP35.65■■■■□ 3.3
CCM2-218ENST00000541586 SSH1Q8WYL5 1049 aa35.64■■■■□ 3.3
CCM2-218ENST00000541586 FMNL2Q96PY5 1086 aa35.64■■■■□ 3.3
CCM2-218ENST00000541586 ATP6V1AP38606 617 aa35.63■■■■□ 3.29
CCM2-218ENST00000541586 ZNF428Q96B54 188 aa35.63■■■■□ 3.29
CCM2-218ENST00000541586 ELL2O00472 640 aaPredicted RBP35.63■■■■□ 3.29
CCM2-218ENST00000541586 EIF4A1P60842 406 aaKnown RBP35.63■■■■□ 3.29
CCM2-218ENST00000541586 TWISTNBQ3B726 338 aaPredicted RBP35.63■■■■□ 3.29
CCM2-218ENST00000541586 EXOC6Q8TAG9 804 aa35.63■■■■□ 3.29
CCM2-218ENST00000541586 SMC4Q9NTJ3 1288 aa35.63■■■■□ 3.29
CCM2-218ENST00000541586 CCNL1Q9UK58 526 aaPredicted RBP35.63■■■■□ 3.29
CCM2-218ENST00000541586 TXNRD1Q16881 649 aa35.61■■■■□ 3.29
CCM2-218ENST00000541586 PROM2Q8N271 834 aa35.61■■■■□ 3.29
CCM2-218ENST00000541586 FRAT1Q92837 279 aaPredicted RBP35.61■■■■□ 3.29
CCM2-218ENST00000541586 SLC4A9Q96Q91 983 aa35.61■■■■□ 3.29
CCM2-218ENST00000541586 ALDH1L2Q3SY69 923 aa35.6■■■■□ 3.29
CCM2-218ENST00000541586 CAMKK2Q96RR4 588 aa35.6■■■■□ 3.29
CCM2-218ENST00000541586 CANXP27824 592 aaKnown RBP35.6■■■■□ 3.29
CCM2-218ENST00000541586 KRT24Q2M2I5 525 aa35.6■■■■□ 3.29
CCM2-218ENST00000541586 CRBNQ96SW2 442 aa35.59■■■■□ 3.29
CCM2-218ENST00000541586 LRRC4BQ9NT99 713 aa35.57■■■■□ 3.29
CCM2-218ENST00000541586 PAPPAQ13219 1627 aa35.56■■■■□ 3.28
CCM2-218ENST00000541586 PRAMEF22A3QJZ6 481 aa35.56■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms