RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 SCN11AQ9UI33 1791 aa30.17■■■□□ 2.42
SFSWAP-204ENST00000535399 LOC102724428A0A0B4J2F2 783 aa30.16■■■□□ 2.42
SFSWAP-204ENST00000535399 NEFMP07197 916 aa30.16■■■□□ 2.42
SFSWAP-204ENST00000535399 SIK1P57059 783 aa30.16■■■□□ 2.42
SFSWAP-204ENST00000535399 SLC15A2Q16348 729 aa30.16■■■□□ 2.42
SFSWAP-204ENST00000535399 ZNF827Q17R98 1081 aa30.15■■■□□ 2.42
SFSWAP-204ENST00000535399 CEMIPQ8WUJ3 1361 aa30.15■■■□□ 2.42
SFSWAP-204ENST00000535399 AKT1S1Q96B36 256 aa30.14■■■□□ 2.42
SFSWAP-204ENST00000535399 ADAMTS8Q9UP79 889 aa30.14■■■□□ 2.42
SFSWAP-204ENST00000535399 MAPK8IP3Q9UPT6 1336 aa30.13■■■□□ 2.41
SFSWAP-204ENST00000535399 NFE2L2Q16236 605 aa30.12■■■□□ 2.41
SFSWAP-204ENST00000535399 HTATSF1O43719 755 aaKnown RBP30.11■■■□□ 2.41
SFSWAP-204ENST00000535399 RTF1Q92541 710 aaKnown RBP30.1■■■□□ 2.41
SFSWAP-204ENST00000535399 SLC4A9Q96Q91 983 aa30.1■■■□□ 2.41
SFSWAP-204ENST00000535399 MCM10Q7L590 875 aa30.09■■■□□ 2.41
SFSWAP-204ENST00000535399 TEFQ10587 303 aa30.08■■■□□ 2.41
SFSWAP-204ENST00000535399 SLC39A6Q13433 755 aa30.08■■■□□ 2.41
SFSWAP-204ENST00000535399 ITPK1Q13572 414 aa30.08■■■□□ 2.41
SFSWAP-204ENST00000535399 CCDC146Q8IYE0 955 aa30.08■■■□□ 2.41
SFSWAP-204ENST00000535399 RBM42Q9BTD8 480 aaKnown RBP30.08■■■□□ 2.41
SFSWAP-204ENST00000535399 ATP6V1AP38606 617 aa30.07■■■□□ 2.4
SFSWAP-204ENST00000535399 DCTN1Q14203 1278 aa30.07■■■□□ 2.4
SFSWAP-204ENST00000535399 PTCD1O75127 700 aaKnown RBP30.06■■■□□ 2.4
SFSWAP-204ENST00000535399 HMGB2P26583 209 aaKnown RBP30.06■■■□□ 2.4
SFSWAP-204ENST00000535399 LINC00116Q8NCU8 138 aa30.06■■■□□ 2.4
SFSWAP-204ENST00000535399 RUNDC1Q96C34 613 aa30.06■■■□□ 2.4
SFSWAP-204ENST00000535399 PDGFDQ9GZP0 370 aaPredicted RBP30.06■■■□□ 2.4
SFSWAP-204ENST00000535399 MRS2Q9HD23 443 aa30.04■■■□□ 2.4
SFSWAP-204ENST00000535399 TMPOP42166 694 aaKnown RBP30.03■■■□□ 2.4
SFSWAP-204ENST00000535399 TFCP2L1Q9NZI6 479 aa30.02■■■□□ 2.4
SFSWAP-204ENST00000535399 VIRMAQ69YN4 1812 aaKnown RBP30.01■■■□□ 2.4
SFSWAP-204ENST00000535399 PNISRQ8TF01 805 aaKnown RBP30.01■■■□□ 2.39
SFSWAP-204ENST00000535399 C5P01031 1676 aa30.01■■■□□ 2.39
SFSWAP-204ENST00000535399 SRCAPQ6ZRS2 3230 aa30■■■□□ 2.39
SFSWAP-204ENST00000535399 RIPK4P57078 832 aa30■■■□□ 2.39
SFSWAP-204ENST00000535399 PNPLA7Q6ZV29 1317 aa29.99■■■□□ 2.39
SFSWAP-204ENST00000535399 KCPQ6ZWJ8 1503 aa29.99■■■□□ 2.39
SFSWAP-204ENST00000535399 ZNF790Q6PG37 636 aa29.98■■■□□ 2.39
SFSWAP-204ENST00000535399 THUMPD2Q9BTF0 503 aaKnown RBP29.98■■■□□ 2.39
SFSWAP-204ENST00000535399 RRP7AQ9Y3A4 280 aaKnown RBP29.98■■■□□ 2.39
SFSWAP-204ENST00000535399 TAF1LQ8IZX4 1826 aa29.98■■■□□ 2.39
SFSWAP-204ENST00000535399 ZNF831Q5JPB2 1677 aa29.98■■■□□ 2.39
SFSWAP-204ENST00000535399 C4BP0C0L5 1744 aa29.97■■■□□ 2.39
SFSWAP-204ENST00000535399 BTBD11A6QL63 1104 aa29.97■■■□□ 2.39
SFSWAP-204ENST00000535399 AK7Q96M32 723 aa29.97■■■□□ 2.39
SFSWAP-204ENST00000535399 SIPA1L3O60292 1781 aaPredicted RBP29.97■■■□□ 2.39
SFSWAP-204ENST00000535399 CASZ1Q86V15 1759 aa29.97■■■□□ 2.39
SFSWAP-204ENST00000535399 AMIGO3Q86WK7 504 aa29.96■■■□□ 2.39
SFSWAP-204ENST00000535399 TTC5Q8N0Z6 440 aa29.96■■■□□ 2.39
SFSWAP-204ENST00000535399 KCNQ3O43525 872 aa29.95■■■□□ 2.39
SFSWAP-204ENST00000535399 TAF7Q15545 349 aaPredicted RBP29.94■■■□□ 2.38
SFSWAP-204ENST00000535399 ZNF496Q96IT1 587 aaPredicted RBP29.94■■■□□ 2.38
SFSWAP-204ENST00000535399 DLG5Q8TDM6 1919 aa29.94■■■□□ 2.38
SFSWAP-204ENST00000535399 CNTNAP4Q9C0A0 1308 aa29.94■■■□□ 2.38
SFSWAP-204ENST00000535399 ZBTB7AO95365 584 aa29.93■■■□□ 2.38
SFSWAP-204ENST00000535399 LMOD3Q0VAK6 560 aa29.93■■■□□ 2.38
SFSWAP-204ENST00000535399 NEUROD2Q15784 382 aa29.93■■■□□ 2.38
SFSWAP-204ENST00000535399 RC3H1Q5TC82 1133 aaKnown RBP29.93■■■□□ 2.38
SFSWAP-204ENST00000535399 COL23A1Q86Y22 540 aaPredicted RBP29.93■■■□□ 2.38
SFSWAP-204ENST00000535399 DNAJC10Q8IXB1 793 aa29.93■■■□□ 2.38
SFSWAP-204ENST00000535399 VSIG10Q8N0Z9 540 aa29.93■■■□□ 2.38
SFSWAP-204ENST00000535399 APAF1O14727 1248 aa29.91■■■□□ 2.38
SFSWAP-204ENST00000535399 GNPATO15228 680 aa29.91■■■□□ 2.38
SFSWAP-204ENST00000535399 SMIM5Q71RC9 77 aa29.91■■■□□ 2.38
SFSWAP-204ENST00000535399 TRIM35Q9UPQ4 493 aa29.91■■■□□ 2.38
SFSWAP-204ENST00000535399 QSER1Q2KHR3 1735 aa29.91■■■□□ 2.38
SFSWAP-204ENST00000535399 CICQ96RK0 1608 aaPredicted RBP29.9■■■□□ 2.38
SFSWAP-204ENST00000535399 TUBGCP6Q96RT7 1819 aa29.9■■■□□ 2.38
SFSWAP-204ENST00000535399 SPON1Q9HCB6 807 aa29.9■■■□□ 2.38
SFSWAP-204ENST00000535399 UBR2Q8IWV8 1755 aa29.9■■■□□ 2.38
SFSWAP-204ENST00000535399 TJP1Q07157 1748 aa29.89■■■□□ 2.38
SFSWAP-204ENST00000535399 CRKLP46109 303 aaKnown RBP29.89■■■□□ 2.38
SFSWAP-204ENST00000535399 FLAD1Q8NFF5 587 aa29.89■■■□□ 2.38
SFSWAP-204ENST00000535399 FMNL2Q96PY5 1086 aa29.89■■■□□ 2.38
SFSWAP-204ENST00000535399 MIS18AQ9NYP9 233 aa29.89■■■□□ 2.38
SFSWAP-204ENST00000535399 HEG1Q9ULI3 1381 aa29.89■■■□□ 2.37
SFSWAP-204ENST00000535399 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.88■■■□□ 2.37
SFSWAP-204ENST00000535399 CYP19A1P11511 503 aaPredicted RBP29.88■■■□□ 2.37
SFSWAP-204ENST00000535399 SSFA2P28290 1259 aa29.88■■■□□ 2.37
SFSWAP-204ENST00000535399 SLC16A10Q8TF71 515 aa29.88■■■□□ 2.37
SFSWAP-204ENST00000535399 MTFR1LQ9H019 292 aa29.88■■■□□ 2.37
SFSWAP-204ENST00000535399 LRP5O75197 1615 aa29.88■■■□□ 2.37
SFSWAP-204ENST00000535399 PHF14O94880 888 aa29.87■■■□□ 2.37
SFSWAP-204ENST00000535399 ATF5Q9Y2D1 282 aaPredicted RBP29.87■■■□□ 2.37
SFSWAP-204ENST00000535399 COL5A3P25940 1745 aaPredicted RBP29.87■■■□□ 2.37
SFSWAP-204ENST00000535399 INTS5Q6P9B9 1019 aaKnown RBP29.86■■■□□ 2.37
SFSWAP-204ENST00000535399 MSH5O43196 834 aa29.85■■■□□ 2.37
SFSWAP-204ENST00000535399 RPS6KA4O75676 772 aa29.85■■■□□ 2.37
SFSWAP-204ENST00000535399 RTCBQ9Y3I0 505 aaKnown RBP29.85■■■□□ 2.37
SFSWAP-204ENST00000535399 UBR3Q6ZT12 1888 aa29.83■■■□□ 2.37
SFSWAP-204ENST00000535399 PTGER2P43116 358 aa29.83■■■□□ 2.37
SFSWAP-204ENST00000535399 CCDC87Q9NVE4 849 aa29.83■■■□□ 2.37
SFSWAP-204ENST00000535399 SGIP1Q9BQI5 828 aa29.82■■■□□ 2.36
SFSWAP-204ENST00000535399 DIEXFQ68CQ4 756 aaKnown RBP29.81■■■□□ 2.36
SFSWAP-204ENST00000535399 TEX13AQ9BXU3 409 aaPredicted RBP29.81■■■□□ 2.36
SFSWAP-204ENST00000535399 MYH14Q7Z406 1995 aaKnown RBP29.81■■■□□ 2.36
SFSWAP-204ENST00000535399 STARD3NLO95772 234 aa29.8■■■□□ 2.36
SFSWAP-204ENST00000535399 ADRA2BP18089 450 aa29.8■■■□□ 2.36
SFSWAP-204ENST00000535399 TRAPPC3LQ5T215 181 aa29.79■■■□□ 2.36
SFSWAP-204ENST00000535399 BABAM1Q9NWV8 329 aa29.79■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms