RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 TMOD3Q9NYL9 352 aa19.14■□□□□ 0.65
CPSF1-206ENST00000531480 CICQ96RK0 1608 aaPredicted RBP19.14■□□□□ 0.65
CPSF1-206ENST00000531480 CCDC146Q8IYE0 955 aa19.13■□□□□ 0.65
CPSF1-206ENST00000531480 UBR2Q8IWV8 1755 aa19.13■□□□□ 0.65
CPSF1-206ENST00000531480 CABP4P57796 275 aa19.12■□□□□ 0.65
CPSF1-206ENST00000531480 EZH2Q15910 746 aaKnown RBP19.12■□□□□ 0.65
CPSF1-206ENST00000531480 MIER1Q8N108 512 aa19.12■□□□□ 0.65
CPSF1-206ENST00000531480 NFATC2IPQ8NCF5 419 aa19.12■□□□□ 0.65
CPSF1-206ENST00000531480 NCBP3Q53F19 620 aaKnown RBP19.11■□□□□ 0.65
CPSF1-206ENST00000531480 TAF1LQ8IZX4 1826 aa19.11■□□□□ 0.65
CPSF1-206ENST00000531480 LRP5O75197 1615 aa19.11■□□□□ 0.65
CPSF1-206ENST00000531480 PALLDQ8WX93 1383 aa19.1■□□□□ 0.65
CPSF1-206ENST00000531480 SMARCC1Q92922 1105 aaPredicted RBP19.1■□□□□ 0.65
CPSF1-206ENST00000531480 ATG3Q9NT62 314 aa19.1■□□□□ 0.65
CPSF1-206ENST00000531480 RIPK4P57078 832 aa19.09■□□□□ 0.65
CPSF1-206ENST00000531480 TXNRD1Q16881 649 aa19.09■□□□□ 0.65
CPSF1-206ENST00000531480 MCM10Q7L590 875 aa19.09■□□□□ 0.65
CPSF1-206ENST00000531480 RTF1Q92541 710 aaKnown RBP19.09■□□□□ 0.65
CPSF1-206ENST00000531480 ASAP1Q9ULH1 1129 aa19.09■□□□□ 0.65
CPSF1-206ENST00000531480 SLC27A3Q5K4L6 730 aa19.08■□□□□ 0.64
CPSF1-206ENST00000531480 TRIM35Q9UPQ4 493 aa19.08■□□□□ 0.64
CPSF1-206ENST00000531480 KDM3BQ7LBC6 1761 aa19.07■□□□□ 0.64
CPSF1-206ENST00000531480 KCPQ6ZWJ8 1503 aa19.07■□□□□ 0.64
CPSF1-206ENST00000531480 APAF1O14727 1248 aa19.07■□□□□ 0.64
CPSF1-206ENST00000531480 LMOD3Q0VAK6 560 aa19.07■□□□□ 0.64
CPSF1-206ENST00000531480 R3HDM1Q15032 1099 aaKnown RBP19.07■□□□□ 0.64
CPSF1-206ENST00000531480 C5P01031 1676 aa19.07■□□□□ 0.64
CPSF1-206ENST00000531480 SRCAPQ6ZRS2 3230 aa19.06■□□□□ 0.64
CPSF1-206ENST00000531480 TEFQ10587 303 aa19.06■□□□□ 0.64
CPSF1-206ENST00000531480 DCTN1Q14203 1278 aa19.06■□□□□ 0.64
CPSF1-206ENST00000531480 LRRC4BQ9NT99 713 aa19.06■□□□□ 0.64
CPSF1-206ENST00000531480 COL5A3P25940 1745 aaPredicted RBP19.05■□□□□ 0.64
CPSF1-206ENST00000531480 TJP1Q07157 1748 aa19.04■□□□□ 0.64
CPSF1-206ENST00000531480 CCDC27Q2M243 656 aa19.04■□□□□ 0.64
CPSF1-206ENST00000531480 FAM9BQ8IZU0 186 aa19.04■□□□□ 0.64
CPSF1-206ENST00000531480 RRP7AQ9Y3A4 280 aaKnown RBP19.04■□□□□ 0.64
CPSF1-206ENST00000531480 QSER1Q2KHR3 1735 aa19.03■□□□□ 0.64
CPSF1-206ENST00000531480 LOC102724428A0A0B4J2F2 783 aa19.03■□□□□ 0.64
CPSF1-206ENST00000531480 SIK1P57059 783 aa19.03■□□□□ 0.64
CPSF1-206ENST00000531480 SLC4A9Q96Q91 983 aa19.03■□□□□ 0.64
CPSF1-206ENST00000531480 TAF7Q15545 349 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-206ENST00000531480 ZNF790Q6PG37 636 aa19.02■□□□□ 0.64
CPSF1-206ENST00000531480 THUMPD2Q9BTF0 503 aaKnown RBP19.02■□□□□ 0.64
CPSF1-206ENST00000531480 BABAM1Q9NWV8 329 aa19.02■□□□□ 0.64
CPSF1-206ENST00000531480 CCNL1Q9UK58 526 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-206ENST00000531480 HMGB2P26583 209 aaKnown RBP19.01■□□□□ 0.63
CPSF1-206ENST00000531480 SLC39A6Q13433 755 aa19.01■□□□□ 0.63
CPSF1-206ENST00000531480 NEUROD2Q15784 382 aa19.01■□□□□ 0.63
CPSF1-206ENST00000531480 NGEFQ8N5V2 710 aa19.01■□□□□ 0.63
CPSF1-206ENST00000531480 C4BP0C0L5 1744 aa19■□□□□ 0.63
CPSF1-206ENST00000531480 BTBD11A6QL63 1104 aa19■□□□□ 0.63
CPSF1-206ENST00000531480 VSIG10Q8N0Z9 540 aa19■□□□□ 0.63
CPSF1-206ENST00000531480 AKT1S1Q96B36 256 aa18.99■□□□□ 0.63
CPSF1-206ENST00000531480 TUBGCP6Q96RT7 1819 aa18.99■□□□□ 0.63
CPSF1-206ENST00000531480 HEG1Q9ULI3 1381 aa18.98■□□□□ 0.63
CPSF1-206ENST00000531480 ITPK1Q13572 414 aa18.98■□□□□ 0.63
CPSF1-206ENST00000531480 ANO8Q9HCE9 1232 aaPredicted RBP18.98■□□□□ 0.63
CPSF1-206ENST00000531480 MYH14Q7Z406 1995 aaKnown RBP18.97■□□□□ 0.63
CPSF1-206ENST00000531480 UBR3Q6ZT12 1888 aa18.97■□□□□ 0.63
CPSF1-206ENST00000531480 CHL1O00533 1208 aa18.97■□□□□ 0.63
CPSF1-206ENST00000531480 ZNF853P0CG23 659 aa18.97■□□□□ 0.63
CPSF1-206ENST00000531480 KCNQ4P56696 695 aa18.97■□□□□ 0.63
CPSF1-206ENST00000531480 ZNF496Q96IT1 587 aaPredicted RBP18.97■□□□□ 0.63
CPSF1-206ENST00000531480 KCNQ3O43525 872 aa18.96■□□□□ 0.63
CPSF1-206ENST00000531480 PTCD1O75127 700 aaKnown RBP18.96■□□□□ 0.63
CPSF1-206ENST00000531480 ATP6V1AP38606 617 aa18.96■□□□□ 0.63
CPSF1-206ENST00000531480 WWC1Q8IX03 1113 aa18.96■□□□□ 0.63
CPSF1-206ENST00000531480 TTC5Q8N0Z6 440 aa18.96■□□□□ 0.63
CPSF1-206ENST00000531480 SLC15A2Q16348 729 aa18.95■□□□□ 0.62
CPSF1-206ENST00000531480 NBPF14Q5TI25 921 aa18.95■□□□□ 0.62
CPSF1-206ENST00000531480 LINC00116Q8NCU8 138 aa18.95■□□□□ 0.62
CPSF1-206ENST00000531480 CFAP44Q96MT7 982 aa18.95■□□□□ 0.62
CPSF1-206ENST00000531480 RBM42Q9BTD8 480 aaKnown RBP18.95■□□□□ 0.62
CPSF1-206ENST00000531480 ZNF521Q96K83 1311 aa18.95■□□□□ 0.62
CPSF1-206ENST00000531480 CASZ1Q86V15 1759 aa18.94■□□□□ 0.62
CPSF1-206ENST00000531480 CALD1Q05682 793 aaKnown RBP18.94■□□□□ 0.62
CPSF1-206ENST00000531480 ZNF827Q17R98 1081 aa18.94■□□□□ 0.62
CPSF1-206ENST00000531480 FMNL2Q96PY5 1086 aa18.94■□□□□ 0.62
CPSF1-206ENST00000531480 CNTNAP4Q9C0A0 1308 aa18.94■□□□□ 0.62
CPSF1-206ENST00000531480 LAMB4A4D0S4 1761 aa18.93■□□□□ 0.62
CPSF1-206ENST00000531480 RC3H1Q5TC82 1133 aaKnown RBP18.93■□□□□ 0.62
CPSF1-206ENST00000531480 IFT57Q9NWB7 429 aa18.93■□□□□ 0.62
CPSF1-206ENST00000531480 MIS18AQ9NYP9 233 aa18.93■□□□□ 0.62
CPSF1-206ENST00000531480 IL16Q14005 1332 aa18.93■□□□□ 0.62
CPSF1-206ENST00000531480 EIF4A1P60842 406 aaKnown RBP18.92■□□□□ 0.62
CPSF1-206ENST00000531480 WDR63Q8IWG1 891 aa18.91■□□□□ 0.62
CPSF1-206ENST00000531480 DNAJC10Q8IXB1 793 aa18.91■□□□□ 0.62
CPSF1-206ENST00000531480 TEX13AQ9BXU3 409 aaPredicted RBP18.91■□□□□ 0.62
CPSF1-206ENST00000531480 STK32BQ9NY57 414 aa18.91■□□□□ 0.62
CPSF1-206ENST00000531480 TSPYL4Q9UJ04 414 aa18.91■□□□□ 0.62
CPSF1-206ENST00000531480 CYP19A1P11511 503 aaPredicted RBP18.9■□□□□ 0.62
CPSF1-206ENST00000531480 GNAI1P63096 354 aa18.9■□□□□ 0.62
CPSF1-206ENST00000531480 SNRPA1P09661 255 aaKnown RBP18.89■□□□□ 0.61
CPSF1-206ENST00000531480 COL24A1Q17RW2 1714 aa18.88■□□□□ 0.61
CPSF1-206ENST00000531480 GIGYF1O75420 1035 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-206ENST00000531480 MBIPQ9NS73 344 aa18.88■□□□□ 0.61
CPSF1-206ENST00000531480 CRKLP46109 303 aaKnown RBP18.87■□□□□ 0.61
CPSF1-206ENST00000531480 INTS5Q6P9B9 1019 aaKnown RBP18.87■□□□□ 0.61
CPSF1-206ENST00000531480 PNPLA7Q6ZV29 1317 aa18.87■□□□□ 0.61
CPSF1-206ENST00000531480 AMIGO3Q86WK7 504 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms