RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	SIK1	P57059	783 aa		12.92	□□□□□ -0.34
CHD7-208	ENST00000528280	AKAP4	Q5JQC9	854 aa		12.92	□□□□□ -0.34
CHD7-208	ENST00000528280	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.92	□□□□□ -0.34
CHD7-208	ENST00000528280	LY75	O60449	1722 aa		12.91	□□□□□ -0.34
CHD7-208	ENST00000528280	MSH5	O43196	834 aa		12.91	□□□□□ -0.34
CHD7-208	ENST00000528280	AEBP1	Q8IUX7	1158 aa		12.91	□□□□□ -0.34
CHD7-208	ENST00000528280	AK7	Q96M32	723 aa		12.91	□□□□□ -0.34
CHD7-208	ENST00000528280	ASAP1	Q9ULH1	1129 aa		12.91	□□□□□ -0.34
CHD7-208	ENST00000528280	NUDC	Q9Y266	331 aa		12.91	□□□□□ -0.34
CHD7-208	ENST00000528280	PNPLA7	Q6ZV29	1317 aa		12.9	□□□□□ -0.34
CHD7-208	ENST00000528280	YBX3	P16989	372 aa	Known RBP eCLIP	12.9	□□□□□ -0.34
CHD7-208	ENST00000528280	ATP6V1A	P38606	617 aa		12.9	□□□□□ -0.34
CHD7-208	ENST00000528280	NLGN2	Q8NFZ4	835 aa		12.9	□□□□□ -0.34
CHD7-208	ENST00000528280	ATG3	Q9NT62	314 aa		12.9	□□□□□ -0.34
CHD7-208	ENST00000528280	CNGB1	Q14028	1251 aa	Predicted RBP	12.89	□□□□□ -0.35
CHD7-208	ENST00000528280	KLHL34	Q8N239	644 aa		12.89	□□□□□ -0.35
CHD7-208	ENST00000528280	DNAJC5G	Q8N7S2	189 aa		12.89	□□□□□ -0.35
CHD7-208	ENST00000528280	ITGB4	P16144	1822 aa		12.88	□□□□□ -0.35
CHD7-208	ENST00000528280	TUBGCP6	Q96RT7	1819 aa		12.88	□□□□□ -0.35
CHD7-208	ENST00000528280	U2SURP	O15042	1029 aa	Known RBP	12.88	□□□□□ -0.35
CHD7-208	ENST00000528280	HMOX1	P09601	288 aa		12.88	□□□□□ -0.35
CHD7-208	ENST00000528280	COL23A1	Q86Y22	540 aa	Predicted RBP	12.88	□□□□□ -0.35
CHD7-208	ENST00000528280	NFATC2IP	Q8NCF5	419 aa		12.88	□□□□□ -0.35
CHD7-208	ENST00000528280	SSFA2	P28290	1259 aa		12.87	□□□□□ -0.35
CHD7-208	ENST00000528280	RC3H1	Q5TC82	1133 aa	Known RBP	12.87	□□□□□ -0.35
CHD7-208	ENST00000528280	RBM42	Q9BTD8	480 aa	Known RBP	12.87	□□□□□ -0.35
CHD7-208	ENST00000528280	ADCY9	O60503	1353 aa		12.86	□□□□□ -0.35
CHD7-208	ENST00000528280	APLP1	P51693	650 aa		12.86	□□□□□ -0.35
CHD7-208	ENST00000528280	GAS2L2	Q8NHY3	880 aa		12.86	□□□□□ -0.35
CHD7-208	ENST00000528280	PPP2R1A	P30153	589 aa		12.85	□□□□□ -0.35
CHD7-208	ENST00000528280	MTHFSD	Q2M296	383 aa	Known RBP	12.85	□□□□□ -0.35
CHD7-208	ENST00000528280	COL13A1	Q5TAT6	717 aa	Predicted RBP	12.85	□□□□□ -0.35
CHD7-208	ENST00000528280	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	RNMT	O43148	476 aa	Known RBP	12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	CAPN15	O75808	1086 aa		12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	FCHSD2	O94868	740 aa		12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	ADRA2B	P18089	450 aa		12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	PRELP	P51888	382 aa		12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	TRAPPC3L	Q5T215	181 aa		12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	LINC00116	Q8NCU8	138 aa		12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	SLC52A2	Q9HAB3	445 aa		12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	RTCB	Q9Y3I0	505 aa	Known RBP	12.84	□□□□□ -0.35
CHD7-208	ENST00000528280	TOGARAM1	Q9Y4F4	1720 aa		12.83	□□□□□ -0.36
CHD7-208	ENST00000528280	GNAT3	A8MTJ3	354 aa		12.83	□□□□□ -0.36
CHD7-208	ENST00000528280	GNPAT	O15228	680 aa		12.83	□□□□□ -0.36
CHD7-208	ENST00000528280	NEFM	P07197	916 aa		12.83	□□□□□ -0.36
CHD7-208	ENST00000528280	ITPK1	Q13572	414 aa		12.83	□□□□□ -0.36
CHD7-208	ENST00000528280	PNN	Q9H307	717 aa	Known RBP	12.83	□□□□□ -0.36
CHD7-208	ENST00000528280	LGR6	Q9HBX8	967 aa		12.83	□□□□□ -0.36
CHD7-208	ENST00000528280	KDM6A	O15550	1401 aa	Predicted RBP	12.82	□□□□□ -0.36
CHD7-208	ENST00000528280	KIF3C	O14782	793 aa		12.82	□□□□□ -0.36
CHD7-208	ENST00000528280	PTCD1	O75127	700 aa	Known RBP	12.82	□□□□□ -0.36
CHD7-208	ENST00000528280	RPS6KA4	O75676	772 aa		12.82	□□□□□ -0.36
CHD7-208	ENST00000528280	NLGN1	Q8N2Q7	840 aa		12.82	□□□□□ -0.36
CHD7-208	ENST00000528280	ZNF526	Q8TF50	670 aa	Predicted RBP	12.82	□□□□□ -0.36
CHD7-208	ENST00000528280	C5	P01031	1676 aa		12.82	□□□□□ -0.36
CHD7-208	ENST00000528280	WDR90	Q96KV7	1748 aa		12.82	□□□□□ -0.36
CHD7-208	ENST00000528280	PHF14	O94880	888 aa		12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	ZEB1	P37275	1124 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	TEF	Q10587	303 aa		12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	CD2AP	Q9Y5K6	639 aa		12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	C4B	P0C0L5	1744 aa		12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	CNTNAP4	Q9C0A0	1308 aa		12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	TAF1L	Q8IZX4	1826 aa		12.81	□□□□□ -0.36
CHD7-208	ENST00000528280	RFC4	P35249	363 aa		12.8	□□□□□ -0.36
CHD7-208	ENST00000528280	RALBP1	Q15311	655 aa		12.8	□□□□□ -0.36
CHD7-208	ENST00000528280	VSIG10	Q8N0Z9	540 aa		12.8	□□□□□ -0.36
CHD7-208	ENST00000528280	SLC34A2	O95436	690 aa		12.79	□□□□□ -0.36
CHD7-208	ENST00000528280	PRKAR2B	P31323	418 aa		12.79	□□□□□ -0.36
CHD7-208	ENST00000528280	TNS4	Q8IZW8	715 aa		12.79	□□□□□ -0.36
CHD7-208	ENST00000528280	TTC5	Q8N0Z6	440 aa		12.79	□□□□□ -0.36
CHD7-208	ENST00000528280	RTF1	Q92541	710 aa	Known RBP	12.79	□□□□□ -0.36
CHD7-208	ENST00000528280	SLC4A9	Q96Q91	983 aa		12.79	□□□□□ -0.36
CHD7-208	ENST00000528280	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.79	□□□□□ -0.36
CHD7-208	ENST00000528280	ZNF831	Q5JPB2	1677 aa		12.79	□□□□□ -0.36
CHD7-208	ENST00000528280	COL3A1	P02461	1466 aa	Predicted RBP	12.78	□□□□□ -0.36
CHD7-208	ENST00000528280	HTATSF1	O43719	755 aa	Known RBP	12.78	□□□□□ -0.36
CHD7-208	ENST00000528280	MSL1	Q68DK7	614 aa		12.78	□□□□□ -0.36
CHD7-208	ENST00000528280	ARHGEF1	Q92888	912 aa	Known RBP	12.78	□□□□□ -0.36
CHD7-208	ENST00000528280	RSPH6A	Q9H0K4	717 aa		12.78	□□□□□ -0.36
CHD7-208	ENST00000528280	STARD3NL	O95772	234 aa		12.77	□□□□□ -0.37
CHD7-208	ENST00000528280	CRKL	P46109	303 aa	Known RBP	12.77	□□□□□ -0.37
CHD7-208	ENST00000528280	IL17RE	Q8NFR9	667 aa		12.77	□□□□□ -0.37
CHD7-208	ENST00000528280	SCN11A	Q9UI33	1791 aa		12.76	□□□□□ -0.37
CHD7-208	ENST00000528280	DDX10	Q13206	875 aa	Known RBP	12.76	□□□□□ -0.37
CHD7-208	ENST00000528280	JMY	Q8N9B5	988 aa		12.76	□□□□□ -0.37
CHD7-208	ENST00000528280	PHACTR3	Q96KR7	559 aa		12.76	□□□□□ -0.37
CHD7-208	ENST00000528280	TOMM70	O94826	608 aa		12.75	□□□□□ -0.37
CHD7-208	ENST00000528280	SLC39A6	Q13433	755 aa		12.75	□□□□□ -0.37
CHD7-208	ENST00000528280	AMIGO3	Q86WK7	504 aa		12.75	□□□□□ -0.37
CHD7-208	ENST00000528280	CCDC87	Q9NVE4	849 aa		12.75	□□□□□ -0.37
CHD7-208	ENST00000528280	UBR3	Q6ZT12	1888 aa		12.74	□□□□□ -0.37
CHD7-208	ENST00000528280	BTBD11	A6QL63	1104 aa		12.74	□□□□□ -0.37
CHD7-208	ENST00000528280	ZPR1	O75312	459 aa		12.74	□□□□□ -0.37
CHD7-208	ENST00000528280	CYP19A1	P11511	503 aa	Predicted RBP	12.74	□□□□□ -0.37
CHD7-208	ENST00000528280	INTS5	Q6P9B9	1019 aa	Known RBP	12.74	□□□□□ -0.37
CHD7-208	ENST00000528280	ZNF790	Q6PG37	636 aa		12.74	□□□□□ -0.37
CHD7-208	ENST00000528280	DNAJC10	Q8IXB1	793 aa		12.74	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms