RNA–Protein interactions for RNA: ENST00000525211.5

CD44-214, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 747 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-214ENST00000525211 KCNQ2O43526 872 aa8.63□□□□□ -1.03
CD44-214ENST00000525211 PHKG2P15735 406 aa8.63□□□□□ -1.03
CD44-214ENST00000525211 DDB1Q16531 1140 aa8.63□□□□□ -1.03
CD44-214ENST00000525211 ZNF530Q6P9A1 599 aaPredicted RBP8.63□□□□□ -1.03
CD44-214ENST00000525211 IL17REQ8NFR9 667 aa8.63□□□□□ -1.03
CD44-214ENST00000525211 ACSBG1Q96GR2 724 aa8.63□□□□□ -1.03
CD44-214ENST00000525211 SALL2Q9Y467 1007 aaPredicted RBP8.63□□□□□ -1.03
CD44-214ENST00000525211 TMPOP42166 694 aaKnown RBP8.62□□□□□ -1.03
CD44-214ENST00000525211 NEUROD2Q15784 382 aa8.62□□□□□ -1.03
CD44-214ENST00000525211 MPRIPQ6WCQ1 1025 aa8.62□□□□□ -1.03
CD44-214ENST00000525211 PAXIP1Q6ZW49 1069 aaPredicted RBP8.62□□□□□ -1.03
CD44-214ENST00000525211 RUNDC1Q96C34 613 aa8.62□□□□□ -1.03
CD44-214ENST00000525211 TRIM35Q9UPQ4 493 aa8.62□□□□□ -1.03
CD44-214ENST00000525211 TOGARAM1Q9Y4F4 1720 aa8.62□□□□□ -1.03
CD44-214ENST00000525211 EP400Q96L91 3159 aa8.61□□□□□ -1.03
CD44-214ENST00000525211 RNMTO43148 476 aaKnown RBP8.61□□□□□ -1.03
CD44-214ENST00000525211 NFE2L2Q16236 605 aa8.61□□□□□ -1.03
CD44-214ENST00000525211 PLEKHO1Q53GL0 409 aaPredicted RBP8.61□□□□□ -1.03
CD44-214ENST00000525211 MCM10Q7L590 875 aa8.61□□□□□ -1.03
CD44-214ENST00000525211 KRT27Q7Z3Y8 459 aa8.61□□□□□ -1.03
CD44-214ENST00000525211 CFAP44Q96MT7 982 aa8.61□□□□□ -1.03
CD44-214ENST00000525211 NKX1-1Q15270 411 aaPredicted RBP8.6□□□□□ -1.03
CD44-214ENST00000525211 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.6□□□□□ -1.03
CD44-214ENST00000525211 SPG7Q9UQ90 795 aa8.6□□□□□ -1.03
CD44-214ENST00000525211 DLG5Q8TDM6 1919 aa8.59□□□□□ -1.03
CD44-214ENST00000525211 RIOK3O14730 519 aaKnown RBP8.59□□□□□ -1.03
CD44-214ENST00000525211 KCNQ3O43525 872 aa8.59□□□□□ -1.03
CD44-214ENST00000525211 PRIM1P49642 420 aaKnown RBP8.59□□□□□ -1.03
CD44-214ENST00000525211 RIPK4P57078 832 aa8.59□□□□□ -1.03
CD44-214ENST00000525211 PDE3BQ13370 1112 aa8.59□□□□□ -1.03
CD44-214ENST00000525211 AMOTQ4VCS5 1084 aa8.59□□□□□ -1.03
CD44-214ENST00000525211 AKAP4Q5JQC9 854 aa8.59□□□□□ -1.03
CD44-214ENST00000525211 IFNL2Q8IZJ0 200 aa8.59□□□□□ -1.03
CD44-214ENST00000525211 CDCA7Q9BWT1 371 aaPredicted RBP8.59□□□□□ -1.03
CD44-214ENST00000525211 MAP3K5Q99683 1374 aa8.59□□□□□ -1.03
CD44-214ENST00000525211 PCDH11XQ9BZA7 1347 aa8.58□□□□□ -1.04
CD44-214ENST00000525211 PCDH11YQ9BZA8 1340 aa8.58□□□□□ -1.04
CD44-214ENST00000525211 TRIM37O94972 964 aa8.58□□□□□ -1.04
CD44-214ENST00000525211 CHRM1P11229 460 aaPredicted RBP8.58□□□□□ -1.04
CD44-214ENST00000525211 HS6ST3Q8IZP7 471 aa8.58□□□□□ -1.04
CD44-214ENST00000525211 PIGBQ92521 554 aa8.58□□□□□ -1.04
CD44-214ENST00000525211 MIS18AQ9NYP9 233 aa8.58□□□□□ -1.04
CD44-214ENST00000525211 FARP1Q9Y4F1 1045 aaPredicted RBP8.58□□□□□ -1.04
CD44-214ENST00000525211 ADAMTS7Q9UKP4 1686 aa8.58□□□□□ -1.04
CD44-214ENST00000525211 DOT1LQ8TEK3 1739 aa8.57□□□□□ -1.04
CD44-214ENST00000525211 GNAT3A8MTJ3 354 aa8.57□□□□□ -1.04
CD44-214ENST00000525211 PYGBP11216 843 aa8.57□□□□□ -1.04
CD44-214ENST00000525211 KCNQ4P56696 695 aa8.57□□□□□ -1.04
CD44-214ENST00000525211 SLC39A6Q13433 755 aa8.57□□□□□ -1.04
CD44-214ENST00000525211 GAS2L2Q8NHY3 880 aa8.57□□□□□ -1.04
CD44-214ENST00000525211 CEMIPQ8WUJ3 1361 aa8.57□□□□□ -1.04
CD44-214ENST00000525211 SBF2Q86WG5 1849 aa8.57□□□□□ -1.04
CD44-214ENST00000525211 ZNF521Q96K83 1311 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 MAPK8IP3Q9UPT6 1336 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 PRKAR2AP13861 404 aaKnown RBP8.56□□□□□ -1.04
CD44-214ENST00000525211 FXR2P51116 673 aaKnown RBP eCLIP8.56□□□□□ -1.04
CD44-214ENST00000525211 KRT24Q2M2I5 525 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 C1orf141Q5JVX7 400 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 WWC1Q8IX03 1113 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 NFATC2IPQ8NCF5 419 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 SPRYD3Q8NCJ5 442 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 CDCA7LQ96GN5 454 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 SLC4A9Q96Q91 983 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 ASAP1Q9ULH1 1129 aa8.56□□□□□ -1.04
CD44-214ENST00000525211 BCL9O00512 1426 aa8.55□□□□□ -1.04
CD44-214ENST00000525211 SRCAPQ6ZRS2 3230 aa8.55□□□□□ -1.04
CD44-214ENST00000525211 ITGB4P16144 1822 aa8.55□□□□□ -1.04
CD44-214ENST00000525211 SYTL4Q96C24 671 aaPredicted RBP8.55□□□□□ -1.04
CD44-214ENST00000525211 DCAF5Q96JK2 942 aa8.55□□□□□ -1.04
CD44-214ENST00000525211 SLC52A2Q9HAB3 445 aa8.55□□□□□ -1.04
CD44-214ENST00000525211 ATG3Q9NT62 314 aa8.55□□□□□ -1.04
CD44-214ENST00000525211 MRC1P22897 1456 aa8.55□□□□□ -1.04
CD44-214ENST00000525211 SCN11AQ9UI33 1791 aa8.55□□□□□ -1.04
CD44-214ENST00000525211 VIRMAQ69YN4 1812 aaKnown RBP8.54□□□□□ -1.04
CD44-214ENST00000525211 PLEKHG2Q9H7P9 1386 aa8.54□□□□□ -1.04
CD44-214ENST00000525211 PRAMEF22A3QJZ6 481 aa8.54□□□□□ -1.04
CD44-214ENST00000525211 HNRNPUQ00839 825 aaKnown RBP eCLIP8.54□□□□□ -1.04
CD44-214ENST00000525211 FAM196AQ6ZSG2 479 aa8.54□□□□□ -1.04
CD44-214ENST00000525211 SMIM5Q71RC9 77 aa8.54□□□□□ -1.04
CD44-214ENST00000525211 DEFB132Q7Z7B7 95 aa8.54□□□□□ -1.04
CD44-214ENST00000525211 UPF1Q92900 1129 aaKnown RBP eCLIP8.54□□□□□ -1.04
CD44-214ENST00000525211 YTHDC1Q96MU7 727 aaKnown RBP8.54□□□□□ -1.04
CD44-214ENST00000525211 KAT6BQ8WYB5 2073 aa8.53□□□□□ -1.04
CD44-214ENST00000525211 SIPA1L3O60292 1781 aaPredicted RBP8.53□□□□□ -1.04
CD44-214ENST00000525211 NHSQ6T4R5 1651 aa8.53□□□□□ -1.04
CD44-214ENST00000525211 ERVV-2B6SEH9 535 aa8.53□□□□□ -1.04
CD44-214ENST00000525211 ZNF853P0CG23 659 aa8.53□□□□□ -1.04
CD44-214ENST00000525211 CABP4P57796 275 aa8.53□□□□□ -1.04
CD44-214ENST00000525211 VSIG10Q8N0Z9 540 aa8.53□□□□□ -1.04
CD44-214ENST00000525211 TSR2Q969E8 191 aaKnown RBP8.53□□□□□ -1.04
CD44-214ENST00000525211 TSPYL2Q9H2G4 693 aaPredicted RBP8.53□□□□□ -1.04
CD44-214ENST00000525211 PNNQ9H307 717 aaKnown RBP8.53□□□□□ -1.04
CD44-214ENST00000525211 TAOK2Q9UL54 1235 aa8.53□□□□□ -1.04
CD44-214ENST00000525211 TNS1Q9HBL0 1735 aaKnown RBP8.53□□□□□ -1.04
CD44-214ENST00000525211 BTAF1O14981 1849 aa8.52□□□□□ -1.04
CD44-214ENST00000525211 HTATSF1O43719 755 aaKnown RBP8.52□□□□□ -1.05
CD44-214ENST00000525211 BCL11BQ9C0K0 894 aaPredicted RBP8.52□□□□□ -1.05
CD44-214ENST00000525211 LRRC4BQ9NT99 713 aa8.52□□□□□ -1.05
CD44-214ENST00000525211 LAS1LQ9Y4W2 734 aaKnown RBP8.52□□□□□ -1.05
CD44-214ENST00000525211 KCPQ6ZWJ8 1503 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms