RNA–Protein interactions for RNA: ENST00000522012.5

R3HCC1-208, Transcript of R3H domain and coiled-coil containing 1, humanhuman

TSL 1 (best)

Gene R3HCC1, Length 1,500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-208ENST00000522012 ELL2O00472 640 aaPredicted RBP27.61■■■□□ 2.01
R3HCC1-208ENST00000522012 CT47B1P0C2W7 299 aaPredicted RBP27.61■■■□□ 2.01
R3HCC1-208ENST00000522012 C8orf58Q8NAV2 365 aa27.61■■■□□ 2.01
R3HCC1-208ENST00000522012 WNK3Q9BYP7 1800 aa27.6■■■□□ 2.01
R3HCC1-208ENST00000522012 ADAMTS7Q9UKP4 1686 aa27.59■■■□□ 2.01
R3HCC1-208ENST00000522012 SHANK3Q9BYB0 1731 aa27.59■■■□□ 2.01
R3HCC1-208ENST00000522012 TSPYL6Q8N831 410 aa27.59■■■□□ 2.01
R3HCC1-208ENST00000522012 RXRBP28702 533 aa27.58■■■□□ 2.01
R3HCC1-208ENST00000522012 KRT24Q2M2I5 525 aa27.58■■■□□ 2.01
R3HCC1-208ENST00000522012 MARCH10Q8NA82 808 aaPredicted RBP27.58■■■□□ 2.01
R3HCC1-208ENST00000522012 GLI3P10071 1580 aa27.57■■■□□ 2
R3HCC1-208ENST00000522012 TWISTNBQ3B726 338 aaPredicted RBP27.57■■■□□ 2
R3HCC1-208ENST00000522012 KCNQ3O43525 872 aa27.57■■■□□ 2
R3HCC1-208ENST00000522012 RARSP54136 660 aaKnown RBP27.56■■■□□ 2
R3HCC1-208ENST00000522012 ONECUT3O60422 494 aaPredicted RBP27.55■■■□□ 2
R3HCC1-208ENST00000522012 VAMP4O75379 141 aa27.55■■■□□ 2
R3HCC1-208ENST00000522012 MRC1P22897 1456 aa27.54■■■□□ 2
R3HCC1-208ENST00000522012 SCN11AQ9UI33 1791 aa27.54■■■□□ 2
R3HCC1-208ENST00000522012 BCAR3O75815 825 aa27.53■■■□□ 2
R3HCC1-208ENST00000522012 EIF4A1P60842 406 aaKnown RBP27.53■■■□□ 2
R3HCC1-208ENST00000522012 SLC39A6Q13433 755 aa27.53■■■□□ 2
R3HCC1-208ENST00000522012 SEPT12Q8IYM1 358 aa27.53■■■□□ 2
R3HCC1-208ENST00000522012 TMOD3Q9NYL9 352 aa27.53■■■□□ 2
R3HCC1-208ENST00000522012 ZNF790Q6PG37 636 aa27.51■■■□□ 2
R3HCC1-208ENST00000522012 UPF1Q92900 1129 aaKnown RBP eCLIP27.51■■■□□ 25e-8■■■■■ 31.3
R3HCC1-208ENST00000522012 ZNF428Q96B54 188 aa27.51■■□□□ 1.99
R3HCC1-208ENST00000522012 BCL2L13Q9BXK5 485 aa27.51■■□□□ 1.99
R3HCC1-208ENST00000522012 RNF123Q5XPI4 1314 aa27.5■■□□□ 1.99
R3HCC1-208ENST00000522012 RRP1P56182 461 aaKnown RBP27.5■■□□□ 1.99
R3HCC1-208ENST00000522012 RBM6P78332 1123 aaKnown RBP27.5■■□□□ 1.99
R3HCC1-208ENST00000522012 TTC5Q8N0Z6 440 aa27.5■■□□□ 1.99
R3HCC1-208ENST00000522012 SYTL4Q96C24 671 aaPredicted RBP27.5■■□□□ 1.99
R3HCC1-208ENST00000522012 THSD7AQ9UPZ6 1657 aa27.49■■□□□ 1.99
R3HCC1-208ENST00000522012 SSH1Q8WYL5 1049 aa27.49■■□□□ 1.99
R3HCC1-208ENST00000522012 SMC4Q9NTJ3 1288 aa27.49■■□□□ 1.99
R3HCC1-208ENST00000522012 NEFLP07196 543 aa27.48■■□□□ 1.99
R3HCC1-208ENST00000522012 PRIM1P49642 420 aaKnown RBP27.48■■□□□ 1.99
R3HCC1-208ENST00000522012 ALDH1L2Q3SY69 923 aa27.47■■□□□ 1.99
R3HCC1-208ENST00000522012 PIGBQ92521 554 aa27.47■■□□□ 1.99
R3HCC1-208ENST00000522012 ACSBG1Q96GR2 724 aa27.47■■□□□ 1.99
R3HCC1-208ENST00000522012 TCERG1O14776 1098 aaKnown RBP27.46■■□□□ 1.99
R3HCC1-208ENST00000522012 PLIN1O60240 522 aa27.46■■□□□ 1.99
R3HCC1-208ENST00000522012 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.46■■□□□ 1.99
R3HCC1-208ENST00000522012 SIPA1L3O60292 1781 aaPredicted RBP27.45■■□□□ 1.99
R3HCC1-208ENST00000522012 VIRMAQ69YN4 1812 aaKnown RBP27.45■■□□□ 1.98
R3HCC1-208ENST00000522012 SOS1Q07889 1333 aaPredicted RBP27.44■■□□□ 1.98
R3HCC1-208ENST00000522012 IRX6P78412 446 aaPredicted RBP27.44■■□□□ 1.98
R3HCC1-208ENST00000522012 KDM3BQ7LBC6 1761 aa27.44■■□□□ 1.98
R3HCC1-208ENST00000522012 TOGARAM1Q9Y4F4 1720 aa27.44■■□□□ 1.98
R3HCC1-208ENST00000522012 FRAT1Q92837 279 aaPredicted RBP27.43■■□□□ 1.98
R3HCC1-208ENST00000522012 ZNF496Q96IT1 587 aaPredicted RBP27.43■■□□□ 1.98
R3HCC1-208ENST00000522012 CANXP27824 592 aaKnown RBP27.42■■□□□ 1.98
R3HCC1-208ENST00000522012 FMNL2Q96PY5 1086 aa27.42■■□□□ 1.98
R3HCC1-208ENST00000522012 BCL9O00512 1426 aa27.42■■□□□ 1.98
R3HCC1-208ENST00000522012 GIGYF1O75420 1035 aaPredicted RBP27.41■■□□□ 1.98
R3HCC1-208ENST00000522012 HOXB7P09629 217 aa27.41■■□□□ 1.98
R3HCC1-208ENST00000522012 FAM182BQ5T319 152 aa27.41■■□□□ 1.98
R3HCC1-208ENST00000522012 NECTIN2Q92692 538 aa27.41■■□□□ 1.98
R3HCC1-208ENST00000522012 ASAP1Q9ULH1 1129 aa27.41■■□□□ 1.98
R3HCC1-208ENST00000522012 GTF3C3Q9Y5Q9 886 aa27.41■■□□□ 1.98
R3HCC1-208ENST00000522012 HEG1Q9ULI3 1381 aa27.41■■□□□ 1.98
R3HCC1-208ENST00000522012 EIF2S2P20042 333 aaKnown RBP27.4■■□□□ 1.98
R3HCC1-208ENST00000522012 CCDC30Q5VVM6 783 aa27.4■■□□□ 1.98
R3HCC1-208ENST00000522012 MRPL50Q8N5N7 158 aaKnown RBP27.4■■□□□ 1.98
R3HCC1-208ENST00000522012 ATG3Q9NT62 314 aa27.4■■□□□ 1.98
R3HCC1-208ENST00000522012 FKBP8Q14318 412 aa27.39■■□□□ 1.98
R3HCC1-208ENST00000522012 HDGFL1Q5TGJ6 251 aa27.39■■□□□ 1.98
R3HCC1-208ENST00000522012 PRAMEF22A3QJZ6 481 aa27.38■■□□□ 1.97
R3HCC1-208ENST00000522012 PTCD1O75127 700 aaKnown RBP27.38■■□□□ 1.97
R3HCC1-208ENST00000522012 KCNQ2O43526 872 aa27.37■■□□□ 1.97
R3HCC1-208ENST00000522012 SNRPA1P09661 255 aaKnown RBP27.37■■□□□ 1.97
R3HCC1-208ENST00000522012 KRT27Q7Z3Y8 459 aa27.37■■□□□ 1.97
R3HCC1-208ENST00000522012 STK31Q9BXU1 1019 aa27.37■■□□□ 1.97
R3HCC1-208ENST00000522012 CHMP4AQ9BY43 222 aa27.37■■□□□ 1.97
R3HCC1-208ENST00000522012 NOB1Q9ULX3 412 aaKnown RBP27.37■■□□□ 1.97
R3HCC1-208ENST00000522012 RGS12O14924 1447 aa27.36■■□□□ 1.97
R3HCC1-208ENST00000522012 SLC4A2P04920 1241 aa27.36■■□□□ 1.97
R3HCC1-208ENST00000522012 BRPF1P55201 1214 aaPredicted RBP27.36■■□□□ 1.97
R3HCC1-208ENST00000522012 KIF16BQ96L93 1317 aa27.35■■□□□ 1.97
R3HCC1-208ENST00000522012 DOT1LQ8TEK3 1739 aa27.35■■□□□ 1.97
R3HCC1-208ENST00000522012 ZKSCAN2Q63HK3 967 aa27.34■■□□□ 1.97
R3HCC1-208ENST00000522012 IPO8O15397 1037 aaKnown RBP27.33■■□□□ 1.97
R3HCC1-208ENST00000522012 RBM42Q9BTD8 480 aaKnown RBP27.33■■□□□ 1.97
R3HCC1-208ENST00000522012 C20orf194Q5TEA3 1177 aa27.32■■□□□ 1.96
R3HCC1-208ENST00000522012 KCPQ6ZWJ8 1503 aa27.31■■□□□ 1.96
R3HCC1-208ENST00000522012 USP16Q9Y5T5 823 aa27.31■■□□□ 1.96
R3HCC1-208ENST00000522012 CHPF2Q9P2E5 772 aa27.3■■□□□ 1.96
R3HCC1-208ENST00000522012 PAPPAQ13219 1627 aa27.3■■□□□ 1.96
R3HCC1-208ENST00000522012 ITGB4P16144 1822 aa27.3■■□□□ 1.96
R3HCC1-208ENST00000522012 ATF7IPQ6VMQ6 1270 aa27.29■■□□□ 1.96
R3HCC1-208ENST00000522012 FAM196AQ6ZSG2 479 aa27.29■■□□□ 1.96
R3HCC1-208ENST00000522012 PTF1AQ7RTS3 328 aa27.28■■□□□ 1.96
R3HCC1-208ENST00000522012 CLUAP1Q96AJ1 413 aa27.28■■□□□ 1.96
R3HCC1-208ENST00000522012 TNNQ9UQP3 1299 aa27.28■■□□□ 1.96
R3HCC1-208ENST00000522012 PDE3AQ14432 1141 aa27.27■■□□□ 1.96
R3HCC1-208ENST00000522012 VSIG10Q8N0Z9 540 aa27.27■■□□□ 1.96
R3HCC1-208ENST00000522012 SMARCC1Q92922 1105 aaPredicted RBP27.27■■□□□ 1.96
R3HCC1-208ENST00000522012 DBF4Q9UBU7 674 aaPredicted RBP27.27■■□□□ 1.96
R3HCC1-208ENST00000522012 TRIM27P14373 513 aa27.26■■□□□ 1.96
R3HCC1-208ENST00000522012 G2E3Q7L622 706 aa27.26■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 143.2 ms