RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 DACT1Q9NYF0 836 aa8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 ERC2O15083 957 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 UVSSAQ2YD98 709 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 WWC2Q6AWC2 1192 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 CASC1Q6TDU7 716 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 FAM184AQ8NB25 1140 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 GCC1Q96CN9 775 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 NINLQ9Y2I6 1382 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 TYRO3Q06418 890 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 DDX11Q96FC9 970 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 MRVI1Q9Y6F6 885 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 NECTIN2Q92692 538 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 CFAP53Q96M91 514 aa8.62□□□□□ -1.03
LIMCH1-207ENST00000508466 CCDC192P0DO97 292 aa8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 OAS2P29728 719 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 HOMER1Q86YM7 354 aa8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 STK26Q9P289 416 aa8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 LAMC3Q9Y6N6 1575 aa8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 SASH3O75995 380 aa8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 ICE2Q659A1 982 aa8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 TMED8Q6PL24 325 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 IL1RAPL2Q9NP60 686 aa8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 ERBB3P21860 1342 aa8.61□□□□□ -1.03
LIMCH1-207ENST00000508466 F6X3S4 739 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 STX6O43752 255 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 REC8O95072 547 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 BRD2P25440 801 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 CASQ1P31415 396 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 ZNF75DP51815 510 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 UBE2HP62256 183 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 STK3Q13188 491 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 C8orf58Q8NAV2 365 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 MIS18AQ9NYP9 233 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 SPG7Q9UQ90 795 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 RRP15Q9Y3B9 282 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 JRKLQ9Y4A0 524 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 GOLGA6L4A6NEF3 574 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 SLU7O95391 586 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 ZNF165P49910 485 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 HSP90AA4PQ58FG1 418 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 PHACTR3Q96KR7 559 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 MEIS3Q99687 375 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 FUCA2Q9BTY2 467 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 TNMDQ9H2S6 317 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 PDRG1Q9NUG6 133 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 PAXBP1Q9Y5B6 917 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 A2MP01023 1474 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 E9PCH4 1651 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 CCDC69A6NI79 296 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 URI1O94763 535 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 ZSCAN22P10073 491 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 MCM6Q14566 821 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 PRPF38AQ8NAV1 312 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 HINFPQ9BQA5 517 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 CABP2Q9NPB3 220 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 DNAI1Q9UI46 699 aa8.6□□□□□ -1.03
LIMCH1-207ENST00000508466 WDR33Q9C0J8 1336 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 HMGXB3Q12766 1538 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 SLC20A2Q08357 652 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 KIF1BPQ96EK5 621 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 STAG3Q9UJ98 1225 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 SMC3Q9UQE7 1217 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 ANKRD36BQ8N2N9 1353 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 N4BP1O75113 896 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 CASTP20810 708 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 TTC6Q86TZ1 520 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 LRRC8AQ8IWT6 810 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 RASEFQ8IZ41 740 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 SUGCTQ9HAC7 445 aa8.59□□□□□ -1.03
LIMCH1-207ENST00000508466 PIK3C2GO75747 1445 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 NSD3Q9BZ95 1437 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 ASXL1Q8IXJ9 1541 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 GJB2P29033 226 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 MAP3K11Q16584 847 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 NUTM1Q86Y26 1132 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 FAM200AQ8TCP9 573 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 CARD6Q9BX69 1037 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 NUP62CLQ9H1M0 184 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 NPC1L1Q9UHC9 1359 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 NR1I2O75469 434 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 AK2P54819 239 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 TEX35Q5T0J7 233 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 TMCO3Q6UWJ1 677 aa8.58□□□□□ -1.04
LIMCH1-207ENST00000508466 VAMP4O75379 141 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 F13A1P00488 732 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 TFRCP02786 760 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 BICD2Q8TD16 824 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 VPS18Q9P253 973 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 NPM3O75607 178 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 PRKAR2BP31323 418 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 SMC1AQ14683 1233 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 TSGA10IPQ3SY00 556 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 FAM43BQ6ZT52 329 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 C11orf57Q6ZUT1 292 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 MRPL50Q8N5N7 158 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 UBXN4Q92575 508 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 FTOQ9C0B1 505 aaKnown RBP eCLIP8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 PTPRCP08575 1304 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 FAM193AP78312 1265 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms