RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 TNS1Q9HBL0 1735 aaKnown RBP19.07■□□□□ 0.64
BRCA1-223ENST00000494123 CCDC27Q2M243 656 aa19.07■□□□□ 0.64
BRCA1-223ENST00000494123 NCBP3Q53F19 620 aaKnown RBP19.07■□□□□ 0.64
BRCA1-223ENST00000494123 SIPA1L3O60292 1781 aaPredicted RBP19.06■□□□□ 0.64
BRCA1-223ENST00000494123 APBA3O96018 575 aa19.05■□□□□ 0.64
BRCA1-223ENST00000494123 CALD1Q05682 793 aaKnown RBP19.05■□□□□ 0.64
BRCA1-223ENST00000494123 CCDC125Q86Z20 511 aa19.05■□□□□ 0.64
BRCA1-223ENST00000494123 HNRNPUQ00839 825 aaKnown RBP eCLIP19.04■□□□□ 0.64
BRCA1-223ENST00000494123 WWC1Q8IX03 1113 aa19.04■□□□□ 0.64
BRCA1-223ENST00000494123 BTBD11A6QL63 1104 aa19.03■□□□□ 0.64
BRCA1-223ENST00000494123 TAF7Q15545 349 aaPredicted RBP19.03■□□□□ 0.64
BRCA1-223ENST00000494123 UPF1Q92900 1129 aaKnown RBP eCLIP19.03■□□□□ 0.64
BRCA1-223ENST00000494123 TTC5Q8N0Z6 440 aa19.02■□□□□ 0.64
BRCA1-223ENST00000494123 SMARCC1Q92922 1105 aaPredicted RBP19.02■□□□□ 0.64
BRCA1-223ENST00000494123 LAS1LQ9Y4W2 734 aaKnown RBP19.02■□□□□ 0.64
BRCA1-223ENST00000494123 BAG6P46379 1132 aa19.01■□□□□ 0.63
BRCA1-223ENST00000494123 ASAP1Q9ULH1 1129 aa19.01■□□□□ 0.63
BRCA1-223ENST00000494123 PAPPAQ13219 1627 aa19.01■□□□□ 0.63
BRCA1-223ENST00000494123 PALLDQ8WX93 1383 aa19■□□□□ 0.63
BRCA1-223ENST00000494123 ATG3Q9NT62 314 aa19■□□□□ 0.63
BRCA1-223ENST00000494123 SLC39A6Q13433 755 aa19■□□□□ 0.63
BRCA1-223ENST00000494123 MIS18AQ9NYP9 233 aa19■□□□□ 0.63
BRCA1-223ENST00000494123 WDR63Q8IWG1 891 aa18.99■□□□□ 0.63
BRCA1-223ENST00000494123 TSPYL4Q9UJ04 414 aa18.99■□□□□ 0.63
BRCA1-223ENST00000494123 RGPD3A6NKT7 1758 aaPredicted RBP18.98■□□□□ 0.63
BRCA1-223ENST00000494123 KDM3BQ7LBC6 1761 aa18.98■□□□□ 0.63
BRCA1-223ENST00000494123 RGPD4Q7Z3J3 1758 aa18.98■□□□□ 0.63
BRCA1-223ENST00000494123 PLSCR1O15162 318 aa18.98■□□□□ 0.63
BRCA1-223ENST00000494123 GNAI1P63096 354 aa18.98■□□□□ 0.63
BRCA1-223ENST00000494123 ZNF790Q6PG37 636 aa18.98■□□□□ 0.63
BRCA1-223ENST00000494123 IFT57Q9NWB7 429 aa18.98■□□□□ 0.63
BRCA1-223ENST00000494123 LY75O60449 1722 aa18.98■□□□□ 0.63
BRCA1-223ENST00000494123 CFAP44Q96MT7 982 aa18.97■□□□□ 0.63
BRCA1-223ENST00000494123 RBM42Q9BTD8 480 aaKnown RBP18.97■□□□□ 0.63
BRCA1-223ENST00000494123 BABAM1Q9NWV8 329 aa18.97■□□□□ 0.63
BRCA1-223ENST00000494123 IL16Q14005 1332 aa18.97■□□□□ 0.63
BRCA1-223ENST00000494123 PTCD1O75127 700 aaKnown RBP18.96■□□□□ 0.63
BRCA1-223ENST00000494123 EN1Q05925 392 aaPredicted RBP18.96■□□□□ 0.63
BRCA1-223ENST00000494123 UBR2Q8IWV8 1755 aa18.96■□□□□ 0.63
BRCA1-223ENST00000494123 DEFB132Q7Z7B7 95 aa18.96■□□□□ 0.63
BRCA1-223ENST00000494123 ZNF521Q96K83 1311 aa18.95■□□□□ 0.62
BRCA1-223ENST00000494123 CHL1O00533 1208 aa18.95■□□□□ 0.62
BRCA1-223ENST00000494123 KCNQ3O43525 872 aa18.94■□□□□ 0.62
BRCA1-223ENST00000494123 GOLGA2Q08379 1002 aa18.94■□□□□ 0.62
BRCA1-223ENST00000494123 FMNL2Q96PY5 1086 aa18.94■□□□□ 0.62
BRCA1-223ENST00000494123 CCNL1Q9UK58 526 aaPredicted RBP18.94■□□□□ 0.62
BRCA1-223ENST00000494123 KCPQ6ZWJ8 1503 aa18.94■□□□□ 0.62
BRCA1-223ENST00000494123 LOC102724428A0A0B4J2F2 783 aa18.93■□□□□ 0.62
BRCA1-223ENST00000494123 ZNF853P0CG23 659 aa18.93■□□□□ 0.62
BRCA1-223ENST00000494123 SIK1P57059 783 aa18.93■□□□□ 0.62
BRCA1-223ENST00000494123 EZH2Q15910 746 aaKnown RBP18.93■□□□□ 0.62
BRCA1-223ENST00000494123 TXNRD1Q16881 649 aa18.93■□□□□ 0.62
BRCA1-223ENST00000494123 YTHDC1Q96MU7 727 aaKnown RBP18.93■□□□□ 0.62
BRCA1-223ENST00000494123 MBIPQ9NS73 344 aa18.93■□□□□ 0.62
BRCA1-223ENST00000494123 ATP6V1AP38606 617 aa18.92■□□□□ 0.62
BRCA1-223ENST00000494123 SLC27A3Q5K4L6 730 aa18.92■□□□□ 0.62
BRCA1-223ENST00000494123 ZNF496Q96IT1 587 aaPredicted RBP18.92■□□□□ 0.62
BRCA1-223ENST00000494123 CAMKK2Q96RR4 588 aa18.92■□□□□ 0.62
BRCA1-223ENST00000494123 ZBED9Q6R2W3 1325 aa18.92■□□□□ 0.62
BRCA1-223ENST00000494123 MYH16Q9H6N6 1097 aa18.92■□□□□ 0.62
BRCA1-223ENST00000494123 ZNF831Q5JPB2 1677 aa18.9■□□□□ 0.62
BRCA1-223ENST00000494123 RREB1Q92766 1687 aa18.9■□□□□ 0.62
BRCA1-223ENST00000494123 HEG1Q9ULI3 1381 aa18.9■□□□□ 0.62
BRCA1-223ENST00000494123 SOCS7O14512 581 aa18.9■□□□□ 0.62
BRCA1-223ENST00000494123 EIF4A1P60842 406 aaKnown RBP18.9■□□□□ 0.62
BRCA1-223ENST00000494123 TSR2Q969E8 191 aaKnown RBP18.9■□□□□ 0.62
BRCA1-223ENST00000494123 E9PSI1 815 aa18.89■□□□□ 0.62
BRCA1-223ENST00000494123 KCNQ4P56696 695 aa18.89■□□□□ 0.62
BRCA1-223ENST00000494123 VSIG10Q8N0Z9 540 aa18.89■□□□□ 0.62
BRCA1-223ENST00000494123 HMGB2P26583 209 aaKnown RBP18.89■□□□□ 0.61
BRCA1-223ENST00000494123 PROM2Q8N271 834 aa18.89■□□□□ 0.61
BRCA1-223ENST00000494123 SPINK5Q9NQ38 1064 aaPredicted RBP18.89■□□□□ 0.61
BRCA1-223ENST00000494123 C5P01031 1676 aa18.88■□□□□ 0.61
BRCA1-223ENST00000494123 FANCIQ9NVI1 1328 aa18.88■□□□□ 0.61
BRCA1-223ENST00000494123 TJP1Q07157 1748 aa18.88■□□□□ 0.61
BRCA1-223ENST00000494123 SNRPA1P09661 255 aaKnown RBP18.88■□□□□ 0.61
BRCA1-223ENST00000494123 SLC4A9Q96Q91 983 aa18.88■□□□□ 0.61
BRCA1-223ENST00000494123 LRRC4BQ9NT99 713 aa18.88■□□□□ 0.61
BRCA1-223ENST00000494123 TAF1LQ8IZX4 1826 aa18.87■□□□□ 0.61
BRCA1-223ENST00000494123 TEX13AQ9BXU3 409 aaPredicted RBP18.87■□□□□ 0.61
BRCA1-223ENST00000494123 CICQ96RK0 1608 aaPredicted RBP18.87■□□□□ 0.61
BRCA1-223ENST00000494123 NUP188Q5SRE5 1749 aa18.87■□□□□ 0.61
BRCA1-223ENST00000494123 SLFN5Q08AF3 891 aa18.86■□□□□ 0.61
BRCA1-223ENST00000494123 ITPK1Q13572 414 aa18.86■□□□□ 0.61
BRCA1-223ENST00000494123 DNAJC10Q8IXB1 793 aa18.86■□□□□ 0.61
BRCA1-223ENST00000494123 CDCA7LQ96GN5 454 aa18.86■□□□□ 0.61
BRCA1-223ENST00000494123 COL5A3P25940 1745 aaPredicted RBP18.85■□□□□ 0.61
BRCA1-223ENST00000494123 LAMB4A4D0S4 1761 aa18.85■□□□□ 0.61
BRCA1-223ENST00000494123 GIGYF1O75420 1035 aaPredicted RBP18.85■□□□□ 0.61
BRCA1-223ENST00000494123 STARD3NLO95772 234 aa18.84■□□□□ 0.61
BRCA1-223ENST00000494123 KRT24Q2M2I5 525 aa18.84■□□□□ 0.61
BRCA1-223ENST00000494123 LINC00116Q8NCU8 138 aa18.84■□□□□ 0.61
BRCA1-223ENST00000494123 PRAMEF22A3QJZ6 481 aa18.83■□□□□ 0.61
BRCA1-223ENST00000494123 C4BP0C0L5 1744 aa18.83■□□□□ 0.6
BRCA1-223ENST00000494123 ELL2O00472 640 aaPredicted RBP18.82■□□□□ 0.6
BRCA1-223ENST00000494123 EXOSC9Q06265 439 aaKnown RBP18.82■□□□□ 0.6
BRCA1-223ENST00000494123 DUSP27Q5VZP5 1158 aa18.82■□□□□ 0.6
BRCA1-223ENST00000494123 CYP19A1P11511 503 aaPredicted RBP18.82■□□□□ 0.6
BRCA1-223ENST00000494123 NBPF14Q5TI25 921 aa18.82■□□□□ 0.6
BRCA1-223ENST00000494123 C8orf58Q8NAV2 365 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms