RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 PCDH11YQ9BZA8 1340 aa11.55□□□□□ -0.56
USP39-216ENST00000490193 ANKRD26Q9UPS8 1709 aa11.55□□□□□ -0.56
USP39-216ENST00000490193 PALLDQ8WX93 1383 aa11.54□□□□□ -0.56
USP39-216ENST00000490193 TONSLQ96HA7 1378 aa11.54□□□□□ -0.56
USP39-216ENST00000490193 NCAPD2Q15021 1401 aa11.54□□□□□ -0.56
USP39-216ENST00000490193 POTEIP0CG38 1075 aa11.54□□□□□ -0.56
USP39-216ENST00000490193 MSL1Q68DK7 614 aa11.54□□□□□ -0.56
USP39-216ENST00000490193 CICQ96RK0 1608 aaPredicted RBP11.53□□□□□ -0.56
USP39-216ENST00000490193 NSD3Q9BZ95 1437 aa11.53□□□□□ -0.56
USP39-216ENST00000490193 ST20-MTHFSA0A0A6YYL1 179 aa11.53□□□□□ -0.56
USP39-216ENST00000490193 FYB1O15117 783 aa11.53□□□□□ -0.56
USP39-216ENST00000490193 TATP17735 454 aaPredicted RBP11.53□□□□□ -0.56
USP39-216ENST00000490193 RRS1Q15050 365 aaKnown RBP11.53□□□□□ -0.56
USP39-216ENST00000490193 FLT4P35916 1363 aa11.53□□□□□ -0.56
USP39-216ENST00000490193 KIF13BQ9NQT8 1826 aa11.52□□□□□ -0.57
USP39-216ENST00000490193 USHBP1Q8N6Y0 703 aa11.52□□□□□ -0.57
USP39-216ENST00000490193 CYP27B1O15528 508 aa11.51□□□□□ -0.57
USP39-216ENST00000490193 CD44P16070 742 aaKnown RBP11.51□□□□□ -0.57
USP39-216ENST00000490193 HSPA6P17066 643 aa11.51□□□□□ -0.57
USP39-216ENST00000490193 SMARCC1Q92922 1105 aaPredicted RBP11.51□□□□□ -0.57
USP39-216ENST00000490193 GGNBP2Q9H3C7 697 aa11.51□□□□□ -0.57
USP39-216ENST00000490193 GPBP1L1Q9HC44 474 aaPredicted RBP11.51□□□□□ -0.57
USP39-216ENST00000490193 FARP1Q9Y4F1 1045 aaPredicted RBP11.51□□□□□ -0.57
USP39-216ENST00000490193 KIAA1551Q9HCM1 1747 aa11.5□□□□□ -0.57
USP39-216ENST00000490193 NKX1-1Q15270 411 aaPredicted RBP11.5□□□□□ -0.57
USP39-216ENST00000490193 HSP90AB2PQ58FF8 381 aa11.5□□□□□ -0.57
USP39-216ENST00000490193 ZNF831Q5JPB2 1677 aa11.49□□□□□ -0.57
USP39-216ENST00000490193 SSFA2P28290 1259 aa11.49□□□□□ -0.57
USP39-216ENST00000490193 MPRIPQ6WCQ1 1025 aa11.49□□□□□ -0.57
USP39-216ENST00000490193 AMIGO3Q86WK7 504 aa11.49□□□□□ -0.57
USP39-216ENST00000490193 AK7Q96M32 723 aa11.49□□□□□ -0.57
USP39-216ENST00000490193 IGSF1Q8N6C5 1336 aa11.49□□□□□ -0.57
USP39-216ENST00000490193 PLEKHG2Q9H7P9 1386 aa11.47□□□□□ -0.57
USP39-216ENST00000490193 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.47□□□□□ -0.57
USP39-216ENST00000490193 TMF1P82094 1093 aa11.47□□□□□ -0.57
USP39-216ENST00000490193 PIGBQ92521 554 aa11.47□□□□□ -0.57
USP39-216ENST00000490193 LOC102724428A0A0B4J2F2 783 aa11.46□□□□□ -0.57
USP39-216ENST00000490193 SIK1P57059 783 aa11.46□□□□□ -0.57
USP39-216ENST00000490193 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.46□□□□□ -0.579e-7■■□□□ 11.5
USP39-216ENST00000490193 BRCA1P38398 1863 aaKnown RBP11.46□□□□□ -0.58
USP39-216ENST00000490193 KIF3CO14782 793 aa11.45□□□□□ -0.58
USP39-216ENST00000490193 LINC00116Q8NCU8 138 aa11.45□□□□□ -0.58
USP39-216ENST00000490193 SPG7Q9UQ90 795 aa11.45□□□□□ -0.58
USP39-216ENST00000490193 COL5A3P25940 1745 aaPredicted RBP11.45□□□□□ -0.58
USP39-216ENST00000490193 PXDNLA1KZ92 1463 aa11.44□□□□□ -0.58
USP39-216ENST00000490193 N4BP2Q86UW6 1770 aaPredicted RBP11.44□□□□□ -0.58
USP39-216ENST00000490193 PHF14O94880 888 aa11.44□□□□□ -0.58
USP39-216ENST00000490193 CDCA8Q53HL2 280 aa11.44□□□□□ -0.58
USP39-216ENST00000490193 ZNF526Q8TF50 670 aaPredicted RBP11.44□□□□□ -0.58
USP39-216ENST00000490193 EMILIN1Q9Y6C2 1016 aa11.44□□□□□ -0.58
USP39-216ENST00000490193 KDRP35968 1356 aa11.43□□□□□ -0.58
USP39-216ENST00000490193 WASHC2AQ641Q2 1341 aa11.43□□□□□ -0.58
USP39-216ENST00000490193 SMIM5Q71RC9 77 aa11.43□□□□□ -0.58
USP39-216ENST00000490193 CARD14Q9BXL6 1004 aa11.43□□□□□ -0.58
USP39-216ENST00000490193 C10orf71Q711Q0 1435 aa11.43□□□□□ -0.58
USP39-216ENST00000490193 ARFGEF1Q9Y6D6 1849 aa11.42□□□□□ -0.58
USP39-216ENST00000490193 ITPK1Q13572 414 aa11.42□□□□□ -0.58
USP39-216ENST00000490193 TMOD3Q9NYL9 352 aa11.42□□□□□ -0.58
USP39-216ENST00000490193 ASAP1Q9ULH1 1129 aa11.42□□□□□ -0.58
USP39-216ENST00000490193 C4AP0C0L4 1744 aa11.42□□□□□ -0.58
USP39-216ENST00000490193 WDR90Q96KV7 1748 aa11.42□□□□□ -0.58
USP39-216ENST00000490193 GNPATO15228 680 aa11.41□□□□□ -0.58
USP39-216ENST00000490193 MMP10P09238 476 aa11.41□□□□□ -0.58
USP39-216ENST00000490193 PHKG2P15735 406 aa11.41□□□□□ -0.58
USP39-216ENST00000490193 TGFB2P61812 414 aa11.41□□□□□ -0.58
USP39-216ENST00000490193 IFNL2Q8IZJ0 200 aa11.41□□□□□ -0.58
USP39-216ENST00000490193 EYA1Q99502 592 aa11.41□□□□□ -0.58
USP39-216ENST00000490193 ATP6V1AP38606 617 aa11.4□□□□□ -0.58
USP39-216ENST00000490193 ATG3Q9NT62 314 aa11.4□□□□□ -0.58
USP39-216ENST00000490193 WWC3Q9ULE0 1092 aa11.4□□□□□ -0.58
USP39-216ENST00000490193 TOMM70O94826 608 aa11.39□□□□□ -0.59
USP39-216ENST00000490193 APLP1P51693 650 aa11.39□□□□□ -0.59
USP39-216ENST00000490193 RC3H1Q5TC82 1133 aaKnown RBP11.39□□□□□ -0.59
USP39-216ENST00000490193 NLGN1Q8N2Q7 840 aa11.39□□□□□ -0.59
USP39-216ENST00000490193 MYH14Q7Z406 1995 aaKnown RBP11.39□□□□□ -0.59
USP39-216ENST00000490193 DNAJC5GQ8N7S2 189 aa11.38□□□□□ -0.59
USP39-216ENST00000490193 DCBLD2Q96PD2 775 aa11.38□□□□□ -0.59
USP39-216ENST00000490193 POLKQ9UBT6 870 aa11.38□□□□□ -0.59
USP39-216ENST00000490193 RTCBQ9Y3I0 505 aaKnown RBP11.38□□□□□ -0.59
USP39-216ENST00000490193 CNTNAP4Q9C0A0 1308 aa11.37□□□□□ -0.59
USP39-216ENST00000490193 ERVV-2B6SEH9 535 aa11.37□□□□□ -0.59
USP39-216ENST00000490193 PPM1GO15355 546 aaPredicted RBP11.37□□□□□ -0.59
USP39-216ENST00000490193 TRAPPC3LQ5T215 181 aa11.37□□□□□ -0.59
USP39-216ENST00000490193 ZNF579Q8NAF0 562 aaKnown RBP11.37□□□□□ -0.59
USP39-216ENST00000490193 SLC4A9Q96Q91 983 aa11.37□□□□□ -0.59
USP39-216ENST00000490193 GYS1P13807 737 aa11.36□□□□□ -0.59
USP39-216ENST00000490193 COL13A1Q5TAT6 717 aaPredicted RBP11.36□□□□□ -0.59
USP39-216ENST00000490193 CCDC87Q9NVE4 849 aa11.36□□□□□ -0.59
USP39-216ENST00000490193 BCS1LQ9Y276 419 aa11.36□□□□□ -0.59
USP39-216ENST00000490193 TJP1Q07157 1748 aa11.35□□□□□ -0.59
USP39-216ENST00000490193 A0A0G2JLW4 131 aa11.35□□□□□ -0.59
USP39-216ENST00000490193 RPS6KA4O75676 772 aa11.35□□□□□ -0.59
USP39-216ENST00000490193 HSP90AB1P08238 724 aaKnown RBP11.35□□□□□ -0.59
USP39-216ENST00000490193 EIF4A2Q14240 407 aaKnown RBP11.35□□□□□ -0.59
USP39-216ENST00000490193 ARHGEF1Q92888 912 aaKnown RBP11.35□□□□□ -0.59
USP39-216ENST00000490193 DCAF5Q96JK2 942 aa11.35□□□□□ -0.59
USP39-216ENST00000490193 TNRC6CQ9HCJ0 1690 aaKnown RBP11.35□□□□□ -0.59
USP39-216ENST00000490193 ADAMTS7Q9UKP4 1686 aa11.35□□□□□ -0.59
USP39-216ENST00000490193 SBF1O95248 1867 aa11.35□□□□□ -0.59
USP39-216ENST00000490193 KDM6AO15550 1401 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms