RNA–Protein interactions for RNA: ENST00000488897.5

COL16A1-215, Transcript of collagen type XVI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL16A1, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL16A1-215ENST00000488897 MIS18AQ9NYP9 233 aa23.27■■□□□ 1.32
COL16A1-215ENST00000488897 COG6Q9Y2V7 657 aa23.27■■□□□ 1.31
COL16A1-215ENST00000488897 OVOS2A0A0G2JMS6 1433 aa23.26■■□□□ 1.31
COL16A1-215ENST00000488897 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.26■■□□□ 1.31
COL16A1-215ENST00000488897 RARSP54136 660 aaKnown RBP23.26■■□□□ 1.31
COL16A1-215ENST00000488897 PANK1Q8TE04 598 aa23.26■■□□□ 1.31
COL16A1-215ENST00000488897 TRIM35Q9UPQ4 493 aa23.26■■□□□ 1.31
COL16A1-215ENST00000488897 THRAP3Q9Y2W1 955 aaKnown RBP23.26■■□□□ 1.31
COL16A1-215ENST00000488897 SLC4A3P48751 1232 aa23.25■■□□□ 1.31
COL16A1-215ENST00000488897 NFE2L2Q16236 605 aa23.25■■□□□ 1.31
COL16A1-215ENST00000488897 PHKG2P15735 406 aa23.24■■□□□ 1.31
COL16A1-215ENST00000488897 IL17REQ8NFR9 667 aa23.24■■□□□ 1.31
COL16A1-215ENST00000488897 NFKBIBQ15653 356 aa23.24■■□□□ 1.31
COL16A1-215ENST00000488897 SPG7Q9UQ90 795 aa23.24■■□□□ 1.31
COL16A1-215ENST00000488897 SYTL4Q96C24 671 aaPredicted RBP23.23■■□□□ 1.31
COL16A1-215ENST00000488897 FRAT1Q92837 279 aaPredicted RBP23.23■■□□□ 1.31
COL16A1-215ENST00000488897 KCNQ2O43526 872 aa23.22■■□□□ 1.31
COL16A1-215ENST00000488897 C1orf141Q5JVX7 400 aa23.22■■□□□ 1.31
COL16A1-215ENST00000488897 DLG5Q8TDM6 1919 aa23.21■■□□□ 1.31
COL16A1-215ENST00000488897 ONECUT3O60422 494 aaPredicted RBP23.21■■□□□ 1.31
COL16A1-215ENST00000488897 VIRMAQ69YN4 1812 aaKnown RBP23.21■■□□□ 1.31
COL16A1-215ENST00000488897 RGS12O14924 1447 aa23.21■■□□□ 1.31
COL16A1-215ENST00000488897 GNAT3A8MTJ3 354 aa23.2■■□□□ 1.3
COL16A1-215ENST00000488897 AMOTQ4VCS5 1084 aa23.2■■□□□ 1.3
COL16A1-215ENST00000488897 IFNL2Q8IZJ0 200 aa23.2■■□□□ 1.3
COL16A1-215ENST00000488897 MYH16Q9H6N6 1097 aa23.2■■□□□ 1.3
COL16A1-215ENST00000488897 SHANK3Q9BYB0 1731 aa23.2■■□□□ 1.3
COL16A1-215ENST00000488897 BRWD3Q6RI45 1802 aa23.19■■□□□ 1.3
COL16A1-215ENST00000488897 LRRC37A3O60309 1634 aa23.19■■□□□ 1.3
COL16A1-215ENST00000488897 GAS2L2Q8NHY3 880 aa23.19■■□□□ 1.3
COL16A1-215ENST00000488897 PNNQ9H307 717 aaKnown RBP23.19■■□□□ 1.3
COL16A1-215ENST00000488897 PCDH11XQ9BZA7 1347 aa23.18■■□□□ 1.3
COL16A1-215ENST00000488897 PCDH11YQ9BZA8 1340 aa23.18■■□□□ 1.3
COL16A1-215ENST00000488897 AKAP4Q5JQC9 854 aa23.18■■□□□ 1.3
COL16A1-215ENST00000488897 NFATC2IPQ8NCF5 419 aa23.18■■□□□ 1.3
COL16A1-215ENST00000488897 WNK3Q9BYP7 1800 aa23.17■■□□□ 1.3
COL16A1-215ENST00000488897 KRT27Q7Z3Y8 459 aa23.17■■□□□ 1.3
COL16A1-215ENST00000488897 PARP4Q9UKK3 1724 aaKnown RBP23.17■■□□□ 1.3
COL16A1-215ENST00000488897 PRIM1P49642 420 aaKnown RBP23.16■■□□□ 1.3
COL16A1-215ENST00000488897 RTF1Q92541 710 aaKnown RBP23.16■■□□□ 1.3
COL16A1-215ENST00000488897 KDM6AO15550 1401 aaPredicted RBP23.16■■□□□ 1.3
COL16A1-215ENST00000488897 MAP3K5Q99683 1374 aa23.16■■□□□ 1.3
COL16A1-215ENST00000488897 RNMTO43148 476 aaKnown RBP23.15■■□□□ 1.3
COL16A1-215ENST00000488897 SLC39A6Q13433 755 aa23.15■■□□□ 1.3
COL16A1-215ENST00000488897 GSE1Q14687 1217 aa23.15■■□□□ 1.3
COL16A1-215ENST00000488897 TNS2Q63HR2 1409 aa23.15■■□□□ 1.3
COL16A1-215ENST00000488897 KCNQ3O43525 872 aa23.14■■□□□ 1.3
COL16A1-215ENST00000488897 THSD7AQ9UPZ6 1657 aa23.14■■□□□ 1.3
COL16A1-215ENST00000488897 CT47B1P0C2W7 299 aaPredicted RBP23.14■■□□□ 1.29
COL16A1-215ENST00000488897 TSR2Q969E8 191 aaKnown RBP23.14■■□□□ 1.29
COL16A1-215ENST00000488897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.13■■□□□ 1.298e-6■■■□□ 14.7
COL16A1-215ENST00000488897 PKD1L3Q7Z443 1732 aa23.13■■□□□ 1.29
COL16A1-215ENST00000488897 CDCA7Q9BWT1 371 aaPredicted RBP23.13■■□□□ 1.29
COL16A1-215ENST00000488897 RLBP1P12271 317 aa23.12■■□□□ 1.29
COL16A1-215ENST00000488897 KRT24Q2M2I5 525 aa23.12■■□□□ 1.29
COL16A1-215ENST00000488897 RWDD1Q9H446 243 aaPredicted RBP23.12■■□□□ 1.29
COL16A1-215ENST00000488897 KCNQ4P56696 695 aa23.11■■□□□ 1.29
COL16A1-215ENST00000488897 PCDHB15Q9Y5E8 787 aa23.11■■□□□ 1.29
COL16A1-215ENST00000488897 TRIM37O94972 964 aa23.11■■□□□ 1.29
COL16A1-215ENST00000488897 ILDR2Q71H61 639 aa23.11■■□□□ 1.29
COL16A1-215ENST00000488897 SRCAPQ6ZRS2 3230 aa23.09■■□□□ 1.29
COL16A1-215ENST00000488897 BECN1Q14457 450 aa23.09■■□□□ 1.29
COL16A1-215ENST00000488897 ELL2O00472 640 aaPredicted RBP23.09■■□□□ 1.29
COL16A1-215ENST00000488897 CABP4P57796 275 aa23.09■■□□□ 1.29
COL16A1-215ENST00000488897 PIGBQ92521 554 aa23.09■■□□□ 1.29
COL16A1-215ENST00000488897 DCAF5Q96JK2 942 aa23.09■■□□□ 1.29
COL16A1-215ENST00000488897 BCL2L13Q9BXK5 485 aa23.09■■□□□ 1.29
COL16A1-215ENST00000488897 TEFQ10587 303 aa23.08■■□□□ 1.28
COL16A1-215ENST00000488897 ZKSCAN2Q63HK3 967 aa23.08■■□□□ 1.28
COL16A1-215ENST00000488897 ASAP1Q9ULH1 1129 aa23.08■■□□□ 1.28
COL16A1-215ENST00000488897 MVPQ14764 893 aaKnown RBP23.07■■□□□ 1.28
COL16A1-215ENST00000488897 TNNQ9UQP3 1299 aa23.07■■□□□ 1.28
COL16A1-215ENST00000488897 TOGARAM1Q9Y4F4 1720 aa23.07■■□□□ 1.28
COL16A1-215ENST00000488897 PDZRN3Q9UPQ7 1066 aa23.07■■□□□ 1.28
COL16A1-215ENST00000488897 SEC24BO95487 1268 aa23.06■■□□□ 1.28
COL16A1-215ENST00000488897 NKX1-1Q15270 411 aaPredicted RBP23.06■■□□□ 1.28
COL16A1-215ENST00000488897 UPF2Q9HAU5 1272 aaKnown RBP23.06■■□□□ 1.28
COL16A1-215ENST00000488897 SLC52A2Q9HAB3 445 aa23.06■■□□□ 1.28
COL16A1-215ENST00000488897 PRAMEF22A3QJZ6 481 aa23.05■■□□□ 1.28
COL16A1-215ENST00000488897 PTCD1O75127 700 aaKnown RBP23.05■■□□□ 1.28
COL16A1-215ENST00000488897 DZIP1LQ8IYY4 767 aaKnown RBP23.04■■□□□ 1.28
COL16A1-215ENST00000488897 BTBD11A6QL63 1104 aa23.03■■□□□ 1.28
COL16A1-215ENST00000488897 FTSJ3Q8IY81 847 aaKnown RBP23.03■■□□□ 1.28
COL16A1-215ENST00000488897 CEMIPQ8WUJ3 1361 aa23.03■■□□□ 1.28
COL16A1-215ENST00000488897 MBIPQ9NS73 344 aa23.03■■□□□ 1.28
COL16A1-215ENST00000488897 TMOD3Q9NYL9 352 aa23.03■■□□□ 1.28
COL16A1-215ENST00000488897 FRAT2O75474 233 aaPredicted RBP23.02■■□□□ 1.28
COL16A1-215ENST00000488897 DOT1LQ8TEK3 1739 aa23.02■■□□□ 1.28
COL16A1-215ENST00000488897 IL16Q14005 1332 aa23.01■■□□□ 1.27
COL16A1-215ENST00000488897 NECTIN2Q92692 538 aa23.01■■□□□ 1.27
COL16A1-215ENST00000488897 TSPYL4Q9UJ04 414 aa23.01■■□□□ 1.27
COL16A1-215ENST00000488897 TAF7Q15545 349 aaPredicted RBP23■■□□□ 1.27
COL16A1-215ENST00000488897 SCN11AQ9UI33 1791 aa23■■□□□ 1.27
COL16A1-215ENST00000488897 HSP90AB1P08238 724 aaKnown RBP23■■□□□ 1.27
COL16A1-215ENST00000488897 LMOD3Q0VAK6 560 aa22.99■■□□□ 1.27
COL16A1-215ENST00000488897 TSPYL6Q8N831 410 aa22.99■■□□□ 1.27
COL16A1-215ENST00000488897 IL27Q8NEV9 243 aa22.99■■□□□ 1.27
COL16A1-215ENST00000488897 SMC4Q9NTJ3 1288 aa22.99■■□□□ 1.27
COL16A1-215ENST00000488897 ITGB4P16144 1822 aa22.98■■□□□ 1.27
COL16A1-215ENST00000488897 EXOSC9Q06265 439 aaKnown RBP22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms