RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 TMUB1Q9BVT8 246 aa8.37□□□□□ -1.07
PTPN4-210ENST00000485247 REPIN1Q9BWE0 567 aaKnown RBP8.37□□□□□ -1.07
PTPN4-210ENST00000485247 CCDC9Q9Y3X0 531 aaKnown RBP8.37□□□□□ -1.07
PTPN4-210ENST00000485247 NALCNQ8IZF0 1738 aa8.37□□□□□ -1.07
PTPN4-210ENST00000485247 DAPK1P53355 1430 aa8.37□□□□□ -1.07
PTPN4-210ENST00000485247 CROCC2H7BZ55 1655 aa8.37□□□□□ -1.07
PTPN4-210ENST00000485247 ANKRD30AQ9BXX3 1397 aa8.36□□□□□ -1.07
PTPN4-210ENST00000485247 NR1I2O75469 434 aa8.36□□□□□ -1.07
PTPN4-210ENST00000485247 MYT1Q01538 1121 aa8.36□□□□□ -1.07
PTPN4-210ENST00000485247 SPHKAPQ2M3C7 1700 aa8.36□□□□□ -1.07
PTPN4-210ENST00000485247 SLIT2O94813 1529 aa8.35□□□□□ -1.07
PTPN4-210ENST00000485247 MARF1Q9Y4F3 1742 aaKnown RBP8.35□□□□□ -1.07
PTPN4-210ENST00000485247 S1PR4O95977 384 aa8.35□□□□□ -1.07
PTPN4-210ENST00000485247 ADH1BP00325 375 aa8.35□□□□□ -1.07
PTPN4-210ENST00000485247 GPCPD1Q9NPB8 672 aa8.35□□□□□ -1.07
PTPN4-210ENST00000485247 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.34□□□□□ -1.07
PTPN4-210ENST00000485247 NPHP3Q7Z494 1330 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 NRXN3Q9Y4C0 1643 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 RNF223E7ERA6 249 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 FOXO3O43524 673 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 ATP6V1AP38606 617 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 VPS72Q15906 364 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 EZH2Q15910 746 aaKnown RBP8.34□□□□□ -1.07
PTPN4-210ENST00000485247 ESCO1Q5FWF5 840 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 FAM182BQ5T319 152 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 KRI1Q8N9T8 703 aaKnown RBP8.34□□□□□ -1.07
PTPN4-210ENST00000485247 ZNF784Q8NCA9 323 aaPredicted RBP8.34□□□□□ -1.07
PTPN4-210ENST00000485247 PRKD2Q9BZL6 878 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 FAM217BQ9NTX9 383 aaPredicted RBP8.34□□□□□ -1.07
PTPN4-210ENST00000485247 SLC27A5Q9Y2P5 690 aa8.34□□□□□ -1.07
PTPN4-210ENST00000485247 PPEF1O14829 653 aaPredicted RBP8.33□□□□□ -1.08
PTPN4-210ENST00000485247 CLCN1P35523 988 aa8.33□□□□□ -1.08
PTPN4-210ENST00000485247 ZNF326Q5BKZ1 582 aaKnown RBP8.33□□□□□ -1.08
PTPN4-210ENST00000485247 EMID1Q96A84 441 aaPredicted RBP8.33□□□□□ -1.08
PTPN4-210ENST00000485247 THAP11Q96EK4 314 aa8.33□□□□□ -1.08
PTPN4-210ENST00000485247 PPP1R1BQ9UD71 204 aaPredicted RBP8.33□□□□□ -1.08
PTPN4-210ENST00000485247 GGCXP38435 758 aa8.32□□□□□ -1.08
PTPN4-210ENST00000485247 IRX2Q9BZI1 471 aaPredicted RBP8.32□□□□□ -1.08
PTPN4-210ENST00000485247 PTPN23Q9H3S7 1636 aa8.32□□□□□ -1.08
PTPN4-210ENST00000485247 PXDNQ92626 1479 aa8.32□□□□□ -1.08
PTPN4-210ENST00000485247 C1QTNF8P60827 252 aa8.31□□□□□ -1.08
PTPN4-210ENST00000485247 AMHR2Q16671 573 aa8.31□□□□□ -1.08
PTPN4-210ENST00000485247 HLA-CQ95604 372 aa8.31□□□□□ -1.08
PTPN4-210ENST00000485247 SPSB2Q99619 263 aa8.31□□□□□ -1.08
PTPN4-210ENST00000485247 ANKRD50Q9ULJ7 1429 aa8.3□□□□□ -1.08
PTPN4-210ENST00000485247 RNF19BQ6ZMZ0 732 aa8.3□□□□□ -1.08
PTPN4-210ENST00000485247 SLC6A16Q9GZN6 736 aa8.3□□□□□ -1.08
PTPN4-210ENST00000485247 ROBO2Q9HCK4 1378 aa8.3□□□□□ -1.08
PTPN4-210ENST00000485247 KDM4AO75164 1064 aa8.29□□□□□ -1.08
PTPN4-210ENST00000485247 CABLES1Q8TDN4 633 aa8.29□□□□□ -1.08
PTPN4-210ENST00000485247 CAMKK2Q96RR4 588 aa8.29□□□□□ -1.08
PTPN4-210ENST00000485247 V9GY48 417 aaPredicted RBP8.29□□□□□ -1.08
PTPN4-210ENST00000485247 ADGRL2O95490 1459 aa8.29□□□□□ -1.08
PTPN4-210ENST00000485247 E9PCH4 1651 aa8.29□□□□□ -1.08
PTPN4-210ENST00000485247 SPATA31A3Q5VYP0 1347 aa8.29□□□□□ -1.08
PTPN4-210ENST00000485247 LRPPRCP42704 1394 aaKnown RBP8.28□□□□□ -1.08
PTPN4-210ENST00000485247 PLA2G2CQ5R387 149 aa8.28□□□□□ -1.08
PTPN4-210ENST00000485247 BRICD5Q6PL45 260 aa8.28□□□□□ -1.08
PTPN4-210ENST00000485247 FAM160A2Q8N612 972 aaPredicted RBP8.28□□□□□ -1.08
PTPN4-210ENST00000485247 ANKLE1Q8NAG6 615 aa8.28□□□□□ -1.08
PTPN4-210ENST00000485247 SPON1Q9HCB6 807 aa8.28□□□□□ -1.08
PTPN4-210ENST00000485247 PRDM9Q9NQV7 894 aa8.28□□□□□ -1.08
PTPN4-210ENST00000485247 RGPD1P0DJD0 1748 aa8.28□□□□□ -1.08
PTPN4-210ENST00000485247 USP32Q8NFA0 1604 aa8.28□□□□□ -1.08
PTPN4-210ENST00000485247 DISP2A7MBM2 1401 aa8.28□□□□□ -1.08
PTPN4-210ENST00000485247 NINLQ9Y2I6 1382 aa8.27□□□□□ -1.09
PTPN4-210ENST00000485247 TRIM66O15016 1216 aa8.27□□□□□ -1.09
PTPN4-210ENST00000485247 HOXA2O43364 376 aa8.27□□□□□ -1.09
PTPN4-210ENST00000485247 KCNQ2O43526 872 aa8.27□□□□□ -1.09
PTPN4-210ENST00000485247 TRIM37O94972 964 aa8.27□□□□□ -1.09
PTPN4-210ENST00000485247 TTLL12Q14166 644 aaPredicted RBP8.27□□□□□ -1.09
PTPN4-210ENST00000485247 SALL2Q9Y467 1007 aaPredicted RBP8.27□□□□□ -1.09
PTPN4-210ENST00000485247 CAMTA1Q9Y6Y1 1673 aa8.27□□□□□ -1.09
PTPN4-210ENST00000485247 FAM83GA6ND36 823 aa8.26□□□□□ -1.09
PTPN4-210ENST00000485247 FMNL1O95466 1100 aaPredicted RBP8.26□□□□□ -1.09
PTPN4-210ENST00000485247 APBA3O96018 575 aa8.26□□□□□ -1.09
PTPN4-210ENST00000485247 SSTR3P32745 418 aaPredicted RBP8.26□□□□□ -1.09
PTPN4-210ENST00000485247 GUCA2AQ02747 115 aa8.26□□□□□ -1.09
PTPN4-210ENST00000485247 NBPF8Q3BBV2 869 aa8.26□□□□□ -1.09
PTPN4-210ENST00000485247 GRIPAP1Q4V328 841 aa8.26□□□□□ -1.09
PTPN4-210ENST00000485247 NBPF14Q5TI25 921 aa8.26□□□□□ -1.09
PTPN4-210ENST00000485247 GIGYF2Q6Y7W6 1299 aaKnown RBP8.26□□□□□ -1.09
PTPN4-210ENST00000485247 PARP9Q8IXQ6 854 aa8.26□□□□□ -1.09
PTPN4-210ENST00000485247 IQGAP3Q86VI3 1631 aa8.25□□□□□ -1.09
PTPN4-210ENST00000485247 LIAT1Q6ZQX7 453 aa8.25□□□□□ -1.09
PTPN4-210ENST00000485247 KRT28Q7Z3Y7 464 aa8.25□□□□□ -1.09
PTPN4-210ENST00000485247 VPS8Q8N3P4 1428 aa8.25□□□□□ -1.09
PTPN4-210ENST00000485247 TNS1Q9HBL0 1735 aaKnown RBP8.25□□□□□ -1.09
PTPN4-210ENST00000485247 PLCH1Q4KWH8 1693 aa8.24□□□□□ -1.09
PTPN4-210ENST00000485247 NWD2Q9ULI1 1742 aa8.24□□□□□ -1.09
PTPN4-210ENST00000485247 HFM1A2PYH4 1435 aa8.24□□□□□ -1.09
PTPN4-210ENST00000485247 USP46P62068 366 aa8.24□□□□□ -1.09
PTPN4-210ENST00000485247 AK7Q96M32 723 aa8.24□□□□□ -1.09
PTPN4-210ENST00000485247 SLC24A3Q9HC58 644 aa8.24□□□□□ -1.09
PTPN4-210ENST00000485247 BTG4Q9NY30 223 aa8.24□□□□□ -1.09
PTPN4-210ENST00000485247 PARD3Q8TEW0 1356 aa8.23□□□□□ -1.09
PTPN4-210ENST00000485247 SLC19A1P41440 591 aa8.23□□□□□ -1.09
PTPN4-210ENST00000485247 FAM50AQ14320 339 aaKnown RBP8.23□□□□□ -1.09
PTPN4-210ENST00000485247 MSS51Q4VC12 460 aa8.23□□□□□ -1.09
PTPN4-210ENST00000485247 FAM196AQ6ZSG2 479 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms