RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CCNL1Q9UK58 526 aaPredicted RBP21.12■□□□□ 0.97
UPF3A-208ENST00000484246 ASAP1Q9ULH1 1129 aa21.12■□□□□ 0.97
UPF3A-208ENST00000484246 HTATSF1O43719 755 aaKnown RBP21.11■□□□□ 0.97
UPF3A-208ENST00000484246 R3HDM1Q15032 1099 aaKnown RBP21.11■□□□□ 0.97
UPF3A-208ENST00000484246 LGR6Q9HBX8 967 aa21.11■□□□□ 0.97
UPF3A-208ENST00000484246 NEFMP07197 916 aa21.1■□□□□ 0.97
UPF3A-208ENST00000484246 STK32BQ9NY57 414 aa21.1■□□□□ 0.97
UPF3A-208ENST00000484246 ZNF831Q5JPB2 1677 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 LOC102724428A0A0B4J2F2 783 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 SIK1P57059 783 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 SLC15A2Q16348 729 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 NFATC2IPQ8NCF5 419 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 IL17REQ8NFR9 667 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 AKT1S1Q96B36 256 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 PSDA5PKW4 1024 aaPredicted RBP21.08■□□□□ 0.97
UPF3A-208ENST00000484246 WDR43Q15061 677 aaKnown RBP eCLIP21.08■□□□□ 0.97
UPF3A-208ENST00000484246 CICQ96RK0 1608 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-208ENST00000484246 MAPK8IP3Q9UPT6 1336 aa21.07■□□□□ 0.96
UPF3A-208ENST00000484246 NFE2L2Q16236 605 aa21.07■□□□□ 0.96
UPF3A-208ENST00000484246 ZNF827Q17R98 1081 aa21.07■□□□□ 0.96
UPF3A-208ENST00000484246 CASZ1Q86V15 1759 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 C5P01031 1676 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 NPM3O75607 178 aaKnown RBP21.03■□□□□ 0.96
UPF3A-208ENST00000484246 KCNQ4P56696 695 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 TEFQ10587 303 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 RTF1Q92541 710 aaKnown RBP21.03■□□□□ 0.96
UPF3A-208ENST00000484246 SLC4A9Q96Q91 983 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 ADAMTS8Q9UP79 889 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 KCPQ6ZWJ8 1503 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 KAT6BQ8WYB5 2073 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 QSER1Q2KHR3 1735 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 ITPK1Q13572 414 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 POTEDQ86YR6 584 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 RUNDC1Q96C34 613 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 LRP5O75197 1615 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 SIPA1L3O60292 1781 aaPredicted RBP21.01■□□□□ 0.95
UPF3A-208ENST00000484246 CCDC184Q52MB2 194 aa21.01■□□□□ 0.95
UPF3A-208ENST00000484246 C4BP0C0L5 1744 aa21.01■□□□□ 0.95
UPF3A-208ENST00000484246 ATP6V1AP38606 617 aa21■□□□□ 0.95
UPF3A-208ENST00000484246 LINC00116Q8NCU8 138 aa21■□□□□ 0.95
UPF3A-208ENST00000484246 TMPOP42166 694 aaKnown RBP20.99■□□□□ 0.95
UPF3A-208ENST00000484246 MCM10Q7L590 875 aa20.99■□□□□ 0.95
UPF3A-208ENST00000484246 PNPLA7Q6ZV29 1317 aa20.99■□□□□ 0.95
UPF3A-208ENST00000484246 CNTNAP4Q9C0A0 1308 aa20.99■□□□□ 0.95
UPF3A-208ENST00000484246 LMOD3Q0VAK6 560 aa20.98■□□□□ 0.95
UPF3A-208ENST00000484246 VSIG10Q8N0Z9 540 aa20.98■□□□□ 0.95
UPF3A-208ENST00000484246 PNISRQ8TF01 805 aaKnown RBP20.98■□□□□ 0.95
UPF3A-208ENST00000484246 TAF1LQ8IZX4 1826 aa20.98■□□□□ 0.95
UPF3A-208ENST00000484246 UBR2Q8IWV8 1755 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 SLC39A6Q13433 755 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 RC3H1Q5TC82 1133 aaKnown RBP20.97■□□□□ 0.95
UPF3A-208ENST00000484246 ZNF790Q6PG37 636 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 RBM42Q9BTD8 480 aaKnown RBP20.97■□□□□ 0.95
UPF3A-208ENST00000484246 MRS2Q9HD23 443 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 TFCP2L1Q9NZI6 479 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 PTCD1O75127 700 aaKnown RBP20.96■□□□□ 0.95
UPF3A-208ENST00000484246 DCTN1Q14203 1278 aa20.96■□□□□ 0.95
UPF3A-208ENST00000484246 CCDC146Q8IYE0 955 aa20.96■□□□□ 0.95
UPF3A-208ENST00000484246 VIRMAQ69YN4 1812 aaKnown RBP20.96■□□□□ 0.95
UPF3A-208ENST00000484246 COL5A3P25940 1745 aaPredicted RBP20.95■□□□□ 0.94
UPF3A-208ENST00000484246 TJP1Q07157 1748 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 TTC5Q8N0Z6 440 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 FLAD1Q8NFF5 587 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 SLC16A10Q8TF71 515 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 AK7Q96M32 723 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 PDGFDQ9GZP0 370 aaPredicted RBP20.95■□□□□ 0.94
UPF3A-208ENST00000484246 BTBD11A6QL63 1104 aa20.94■□□□□ 0.94
UPF3A-208ENST00000484246 SSFA2P28290 1259 aa20.94■□□□□ 0.94
UPF3A-208ENST00000484246 RIPK4P57078 832 aa20.94■□□□□ 0.94
UPF3A-208ENST00000484246 HEG1Q9ULI3 1381 aa20.94■□□□□ 0.94
UPF3A-208ENST00000484246 TAF7Q15545 349 aaPredicted RBP20.93■□□□□ 0.94
UPF3A-208ENST00000484246 MTFR1LQ9H019 292 aa20.93■□□□□ 0.94
UPF3A-208ENST00000484246 TUBGCP6Q96RT7 1819 aa20.92■□□□□ 0.94
UPF3A-208ENST00000484246 ZNF496Q96IT1 587 aaPredicted RBP20.92■□□□□ 0.94
UPF3A-208ENST00000484246 FMNL2Q96PY5 1086 aa20.91■□□□□ 0.94
UPF3A-208ENST00000484246 SPON1Q9HCB6 807 aa20.91■□□□□ 0.94
UPF3A-208ENST00000484246 BABAM1Q9NWV8 329 aa20.91■□□□□ 0.94
UPF3A-208ENST00000484246 DLG5Q8TDM6 1919 aa20.9■□□□□ 0.94
UPF3A-208ENST00000484246 AMIGO3Q86WK7 504 aa20.9■□□□□ 0.94
UPF3A-208ENST00000484246 COL23A1Q86Y22 540 aaPredicted RBP20.9■□□□□ 0.94
UPF3A-208ENST00000484246 DNAJC10Q8IXB1 793 aa20.9■□□□□ 0.94
UPF3A-208ENST00000484246 RNF216Q9NWF9 866 aaPredicted RBP20.9■□□□□ 0.94
UPF3A-208ENST00000484246 TRIM35Q9UPQ4 493 aa20.9■□□□□ 0.94
UPF3A-208ENST00000484246 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.89■□□□□ 0.93
UPF3A-208ENST00000484246 GNPATO15228 680 aa20.89■□□□□ 0.93
UPF3A-208ENST00000484246 CYP19A1P11511 503 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-208ENST00000484246 SGIP1Q9BQI5 828 aa20.89■□□□□ 0.93
UPF3A-208ENST00000484246 THUMPD2Q9BTF0 503 aaKnown RBP20.89■□□□□ 0.93
UPF3A-208ENST00000484246 TEX13AQ9BXU3 409 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-208ENST00000484246 UBR3Q6ZT12 1888 aa20.89■□□□□ 0.93
UPF3A-208ENST00000484246 KCNQ3O43525 872 aa20.88■□□□□ 0.93
UPF3A-208ENST00000484246 RPS6KA4O75676 772 aa20.88■□□□□ 0.93
UPF3A-208ENST00000484246 CRKLP46109 303 aaKnown RBP20.88■□□□□ 0.93
UPF3A-208ENST00000484246 RRP7AQ9Y3A4 280 aaKnown RBP20.88■□□□□ 0.93
UPF3A-208ENST00000484246 APAF1O14727 1248 aa20.87■□□□□ 0.93
UPF3A-208ENST00000484246 ZBTB7AO95365 584 aa20.87■□□□□ 0.93
UPF3A-208ENST00000484246 PTGER2P43116 358 aa20.87■□□□□ 0.93
UPF3A-208ENST00000484246 INTS5Q6P9B9 1019 aaKnown RBP20.87■□□□□ 0.93
UPF3A-208ENST00000484246 RTCBQ9Y3I0 505 aaKnown RBP20.87■□□□□ 0.93
UPF3A-208ENST00000484246 COL24A1Q17RW2 1714 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms