RNA–Protein interactions for RNA: ENST00000478582.5

CCM2-211, Transcript of CCM2 scaffold protein, humanhuman

TSL 3

Gene CCM2, Length 937 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-211ENST00000478582 PALLDQ8WX93 1383 aa35.49■■■■□ 3.27
CCM2-211ENST00000478582 MAP3K5Q99683 1374 aa35.49■■■■□ 3.27
CCM2-211ENST00000478582 ZBTB7AO95365 584 aa35.48■■■■□ 3.27
CCM2-211ENST00000478582 TMOD3Q9NYL9 352 aa35.47■■■■□ 3.27
CCM2-211ENST00000478582 MAPK8IP3Q9UPT6 1336 aa35.47■■■■□ 3.27
CCM2-211ENST00000478582 ADAMTS7Q9UKP4 1686 aa35.46■■■■□ 3.27
CCM2-211ENST00000478582 RNMTO43148 476 aaKnown RBP35.46■■■■□ 3.27
CCM2-211ENST00000478582 HMGB2P26583 209 aaKnown RBP35.45■■■■□ 3.27
CCM2-211ENST00000478582 RUNDC1Q96C34 613 aa35.45■■■■□ 3.27
CCM2-211ENST00000478582 LGR6Q9HBX8 967 aa35.45■■■■□ 3.27
CCM2-211ENST00000478582 SCN11AQ9UI33 1791 aa35.44■■■■□ 3.26
CCM2-211ENST00000478582 MTFR1LQ9H019 292 aa35.44■■■■□ 3.26
CCM2-211ENST00000478582 PPP1R1BQ9UD71 204 aaPredicted RBP35.44■■■■□ 3.26
CCM2-211ENST00000478582 ATF5Q9Y2D1 282 aaPredicted RBP35.44■■■■□ 3.26
CCM2-211ENST00000478582 HTATSF1O43719 755 aaKnown RBP35.43■■■■□ 3.26
CCM2-211ENST00000478582 NFE2L2Q16236 605 aa35.43■■■■□ 3.26
CCM2-211ENST00000478582 TFCP2L1Q9NZI6 479 aa35.43■■■■□ 3.26
CCM2-211ENST00000478582 CABP4P57796 275 aa35.42■■■■□ 3.26
CCM2-211ENST00000478582 QSER1Q2KHR3 1735 aa35.42■■■■□ 3.26
CCM2-211ENST00000478582 IL17REQ8NFR9 667 aa35.41■■■■□ 3.26
CCM2-211ENST00000478582 CCDC146Q8IYE0 955 aa35.4■■■■□ 3.26
CCM2-211ENST00000478582 PNPLA7Q6ZV29 1317 aa35.39■■■■□ 3.26
CCM2-211ENST00000478582 CCER2I3L3R5 266 aa35.39■■■■□ 3.26
CCM2-211ENST00000478582 PTGER2P43116 358 aa35.39■■■■□ 3.26
CCM2-211ENST00000478582 MRC1P22897 1456 aa35.39■■■■□ 3.26
CCM2-211ENST00000478582 CEMIPQ8WUJ3 1361 aa35.38■■■■□ 3.26
CCM2-211ENST00000478582 NFATC2IPQ8NCF5 419 aa35.38■■■■□ 3.25
CCM2-211ENST00000478582 SLC52A2Q9HAB3 445 aa35.38■■■■□ 3.25
CCM2-211ENST00000478582 SLC16A10Q8TF71 515 aa35.37■■■■□ 3.25
CCM2-211ENST00000478582 ASAP1Q9ULH1 1129 aa35.37■■■■□ 3.25
CCM2-211ENST00000478582 RTF1Q92541 710 aaKnown RBP35.36■■■■□ 3.25
CCM2-211ENST00000478582 C5P01031 1676 aa35.36■■■■□ 3.25
CCM2-211ENST00000478582 TAF1LQ8IZX4 1826 aa35.35■■■■□ 3.25
CCM2-211ENST00000478582 TUBGCP6Q96RT7 1819 aa35.35■■■■□ 3.25
CCM2-211ENST00000478582 TMPOP42166 694 aaKnown RBP35.35■■■■□ 3.25
CCM2-211ENST00000478582 ATG3Q9NT62 314 aa35.35■■■■□ 3.25
CCM2-211ENST00000478582 VIRMAQ69YN4 1812 aaKnown RBP35.34■■■■□ 3.25
CCM2-211ENST00000478582 LOC102724428A0A0B4J2F2 783 aa35.33■■■■□ 3.25
CCM2-211ENST00000478582 SIK1P57059 783 aa35.33■■■■□ 3.25
CCM2-211ENST00000478582 SGIP1Q9BQI5 828 aa35.33■■■■□ 3.25
CCM2-211ENST00000478582 RIPK4P57078 832 aa35.31■■■■□ 3.24
CCM2-211ENST00000478582 DLG5Q8TDM6 1919 aa35.3■■■■□ 3.24
CCM2-211ENST00000478582 TEFQ10587 303 aa35.3■■■■□ 3.24
CCM2-211ENST00000478582 MCM10Q7L590 875 aa35.3■■■■□ 3.24
CCM2-211ENST00000478582 MIER1Q8N108 512 aa35.28■■■■□ 3.24
CCM2-211ENST00000478582 DCTN1Q14203 1278 aa35.27■■■■□ 3.24
CCM2-211ENST00000478582 COL23A1Q86Y22 540 aaPredicted RBP35.27■■■■□ 3.24
CCM2-211ENST00000478582 ATP6V1AP38606 617 aa35.26■■■■□ 3.24
CCM2-211ENST00000478582 LMOD3Q0VAK6 560 aa35.26■■■■□ 3.24
CCM2-211ENST00000478582 C4BP0C0L5 1744 aa35.26■■■■□ 3.23
CCM2-211ENST00000478582 APAF1O14727 1248 aa35.25■■■■□ 3.23
CCM2-211ENST00000478582 FLAD1Q8NFF5 587 aa35.25■■■■□ 3.23
CCM2-211ENST00000478582 RRP7AQ9Y3A4 280 aaKnown RBP35.25■■■■□ 3.23
CCM2-211ENST00000478582 FAM9BQ8IZU0 186 aa35.24■■■■□ 3.23
CCM2-211ENST00000478582 AK7Q96M32 723 aa35.24■■■■□ 3.23
CCM2-211ENST00000478582 SIPA1L3O60292 1781 aaPredicted RBP35.23■■■■□ 3.23
CCM2-211ENST00000478582 ITPK1Q13572 414 aa35.23■■■■□ 3.23
CCM2-211ENST00000478582 LINC00116Q8NCU8 138 aa35.23■■■■□ 3.23
CCM2-211ENST00000478582 MSH5O43196 834 aa35.22■■■■□ 3.23
CCM2-211ENST00000478582 ARXQ96QS3 562 aa35.22■■■■□ 3.23
CCM2-211ENST00000478582 NEUROD2Q15784 382 aa35.21■■■■□ 3.23
CCM2-211ENST00000478582 TRIM35Q9UPQ4 493 aa35.21■■■■□ 3.23
CCM2-211ENST00000478582 COL24A1Q17RW2 1714 aa35.2■■■■□ 3.23
CCM2-211ENST00000478582 RBM42Q9BTD8 480 aaKnown RBP35.2■■■■□ 3.23
CCM2-211ENST00000478582 POLD1P28340 1107 aa35.19■■■■□ 3.22
CCM2-211ENST00000478582 TAF7Q15545 349 aaPredicted RBP35.19■■■■□ 3.22
CCM2-211ENST00000478582 SLC4A9Q96Q91 983 aa35.18■■■■□ 3.22
CCM2-211ENST00000478582 ZNF831Q5JPB2 1677 aa35.17■■■■□ 3.22
CCM2-211ENST00000478582 SLC39A6Q13433 755 aa35.17■■■■□ 3.22
CCM2-211ENST00000478582 NCBP3Q53F19 620 aaKnown RBP35.17■■■■□ 3.22
CCM2-211ENST00000478582 FHDC1Q9C0D6 1143 aaPredicted RBP35.17■■■■□ 3.22
CCM2-211ENST00000478582 BTBD11A6QL63 1104 aa35.16■■■■□ 3.22
CCM2-211ENST00000478582 THUMPD2Q9BTF0 503 aaKnown RBP35.16■■■■□ 3.22
CCM2-211ENST00000478582 UBR3Q6ZT12 1888 aa35.16■■■■□ 3.22
CCM2-211ENST00000478582 ZNF790Q6PG37 636 aa35.15■■■■□ 3.22
CCM2-211ENST00000478582 SYT17Q9BSW7 474 aa35.15■■■■□ 3.22
CCM2-211ENST00000478582 AMIGO3Q86WK7 504 aa35.14■■■■□ 3.22
CCM2-211ENST00000478582 SSFA2P28290 1259 aa35.13■■■■□ 3.21
CCM2-211ENST00000478582 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP35.12■■■■□ 3.21
CCM2-211ENST00000478582 PTCD1O75127 700 aaKnown RBP35.12■■■■□ 3.21
CCM2-211ENST00000478582 TTC5Q8N0Z6 440 aa35.12■■■■□ 3.21
CCM2-211ENST00000478582 KCPQ6ZWJ8 1503 aa35.11■■■■□ 3.21
CCM2-211ENST00000478582 PHF14O94880 888 aa35.11■■■■□ 3.21
CCM2-211ENST00000478582 GNPATO15228 680 aa35.1■■■■□ 3.21
CCM2-211ENST00000478582 CCDC27Q2M243 656 aa35.1■■■■□ 3.21
CCM2-211ENST00000478582 UBR2Q8IWV8 1755 aa35.1■■■■□ 3.21
CCM2-211ENST00000478582 DCAF8L1A6NGE4 600 aa35.09■■■■□ 3.21
CCM2-211ENST00000478582 RC3H1Q5TC82 1133 aaKnown RBP35.09■■■■□ 3.21
CCM2-211ENST00000478582 SMIM5Q71RC9 77 aa35.09■■■■□ 3.21
CCM2-211ENST00000478582 VSIG10Q8N0Z9 540 aa35.09■■■■□ 3.21
CCM2-211ENST00000478582 BABAM1Q9NWV8 329 aa35.09■■■■□ 3.21
CCM2-211ENST00000478582 CICQ96RK0 1608 aaPredicted RBP35.07■■■■□ 3.21
CCM2-211ENST00000478582 MSL1Q68DK7 614 aa35.07■■■■□ 3.2
CCM2-211ENST00000478582 KCNQ3O43525 872 aa35.06■■■■□ 3.2
CCM2-211ENST00000478582 ZNF496Q96IT1 587 aaPredicted RBP35.06■■■■□ 3.2
CCM2-211ENST00000478582 COL5A3P25940 1745 aaPredicted RBP35.06■■■■□ 3.2
CCM2-211ENST00000478582 NGEFQ8N5V2 710 aa35.05■■■■□ 3.2
CCM2-211ENST00000478582 RTCBQ9Y3I0 505 aaKnown RBP35.05■■■■□ 3.2
CCM2-211ENST00000478582 CNTNAP4Q9C0A0 1308 aa35.05■■■■□ 3.2
CCM2-211ENST00000478582 FMNL2Q96PY5 1086 aa35.04■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms