RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 LOC102724428A0A0B4J2F2 783 aa11.11□□□□□ -0.63
HDAC6-221ENST00000477561 ATP6V1AP38606 617 aa11.11□□□□□ -0.63
HDAC6-221ENST00000477561 SIK1P57059 783 aa11.11□□□□□ -0.63
HDAC6-221ENST00000477561 AKAP4Q5JQC9 854 aa11.11□□□□□ -0.63
HDAC6-221ENST00000477561 NFATC2IPQ8NCF5 419 aa11.11□□□□□ -0.63
HDAC6-221ENST00000477561 RBM42Q9BTD8 480 aaKnown RBP11.11□□□□□ -0.63
HDAC6-221ENST00000477561 RNF216Q9NWF9 866 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-221ENST00000477561 ITPK1Q13572 414 aa11.1□□□□□ -0.63
HDAC6-221ENST00000477561 COL23A1Q86Y22 540 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-221ENST00000477561 LINC00116Q8NCU8 138 aa11.1□□□□□ -0.63
HDAC6-221ENST00000477561 PTCD1O75127 700 aaKnown RBP11.09□□□□□ -0.63
HDAC6-221ENST00000477561 U2AF1L5P0DN76 240 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-221ENST00000477561 U2AF1Q01081 240 aaKnown RBP eCLIP11.09□□□□□ -0.63
HDAC6-221ENST00000477561 AK7Q96M32 723 aa11.09□□□□□ -0.63
HDAC6-221ENST00000477561 SLC4A9Q96Q91 983 aa11.09□□□□□ -0.63
HDAC6-221ENST00000477561 NUDCQ9Y266 331 aa11.09□□□□□ -0.63
HDAC6-221ENST00000477561 C5P01031 1676 aa11.08□□□□□ -0.64
HDAC6-221ENST00000477561 RNMTO43148 476 aaKnown RBP11.08□□□□□ -0.64
HDAC6-221ENST00000477561 PHF14O94880 888 aa11.08□□□□□ -0.64
HDAC6-221ENST00000477561 PRKAR2BP31323 418 aa11.08□□□□□ -0.64
HDAC6-221ENST00000477561 MSL1Q68DK7 614 aa11.08□□□□□ -0.64
HDAC6-221ENST00000477561 AMIGO3Q86WK7 504 aa11.08□□□□□ -0.64
HDAC6-221ENST00000477561 PHACTR3Q96KR7 559 aa11.08□□□□□ -0.64
HDAC6-221ENST00000477561 SGIP1Q9BQI5 828 aa11.08□□□□□ -0.64
HDAC6-221ENST00000477561 TUBGCP6Q96RT7 1819 aa11.07□□□□□ -0.64
HDAC6-221ENST00000477561 HOXD11P31277 338 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-221ENST00000477561 SLC16A10Q8TF71 515 aa11.07□□□□□ -0.64
HDAC6-221ENST00000477561 ARXQ96QS3 562 aa11.07□□□□□ -0.64
HDAC6-221ENST00000477561 RSPH6AQ9H0K4 717 aa11.07□□□□□ -0.64
HDAC6-221ENST00000477561 C4BP0C0L5 1744 aa11.06□□□□□ -0.64
HDAC6-221ENST00000477561 GNPATO15228 680 aa11.06□□□□□ -0.64
HDAC6-221ENST00000477561 SLC39A6Q13433 755 aa11.06□□□□□ -0.64
HDAC6-221ENST00000477561 KLHL34Q8N239 644 aa11.06□□□□□ -0.64
HDAC6-221ENST00000477561 FHDC1Q9C0D6 1143 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-221ENST00000477561 SLC52A2Q9HAB3 445 aa11.06□□□□□ -0.64
HDAC6-221ENST00000477561 TAF1LQ8IZX4 1826 aa11.06□□□□□ -0.64
HDAC6-221ENST00000477561 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.05□□□□□ -0.64
HDAC6-221ENST00000477561 GNAT3A8MTJ3 354 aa11.05□□□□□ -0.64
HDAC6-221ENST00000477561 HMGB2P26583 209 aaKnown RBP11.05□□□□□ -0.64
HDAC6-221ENST00000477561 POLD1P28340 1107 aa11.05□□□□□ -0.64
HDAC6-221ENST00000477561 QSER1Q2KHR3 1735 aa11.05□□□□□ -0.64
HDAC6-221ENST00000477561 FLAD1Q8NFF5 587 aa11.05□□□□□ -0.64
HDAC6-221ENST00000477561 IL17REQ8NFR9 667 aa11.05□□□□□ -0.64
HDAC6-221ENST00000477561 GAS2L2Q8NHY3 880 aa11.05□□□□□ -0.64
HDAC6-221ENST00000477561 SYT17Q9BSW7 474 aa11.05□□□□□ -0.64
HDAC6-221ENST00000477561 SCN11AQ9UI33 1791 aa11.04□□□□□ -0.64
HDAC6-221ENST00000477561 MAP3K5Q99683 1374 aa11.03□□□□□ -0.64
HDAC6-221ENST00000477561 FCHSD2O94868 740 aa11.03□□□□□ -0.64
HDAC6-221ENST00000477561 SSFA2P28290 1259 aa11.03□□□□□ -0.64
HDAC6-221ENST00000477561 RALBP1Q15311 655 aa11.03□□□□□ -0.64
HDAC6-221ENST00000477561 DIEXFQ68CQ4 756 aaKnown RBP11.03□□□□□ -0.64
HDAC6-221ENST00000477561 TEFQ10587 303 aa11.02□□□□□ -0.65
HDAC6-221ENST00000477561 TRAPPC3LQ5T215 181 aa11.02□□□□□ -0.65
HDAC6-221ENST00000477561 DNAJC10Q8IXB1 793 aa11.02□□□□□ -0.65
HDAC6-221ENST00000477561 RTCBQ9Y3I0 505 aaKnown RBP11.02□□□□□ -0.65
HDAC6-221ENST00000477561 CRKLP46109 303 aaKnown RBP11.01□□□□□ -0.65
HDAC6-221ENST00000477561 DCTN1Q14203 1278 aa11.01□□□□□ -0.65
HDAC6-221ENST00000477561 RC3H1Q5TC82 1133 aaKnown RBP11.01□□□□□ -0.65
HDAC6-221ENST00000477561 MCM10Q7L590 875 aa11.01□□□□□ -0.65
HDAC6-221ENST00000477561 ARHGEF1Q92888 912 aaKnown RBP11.01□□□□□ -0.65
HDAC6-221ENST00000477561 UBR3Q6ZT12 1888 aa11.01□□□□□ -0.65
HDAC6-221ENST00000477561 MRC1P22897 1456 aa11□□□□□ -0.65
HDAC6-221ENST00000477561 DCAF8L1A6NGE4 600 aa11□□□□□ -0.65
HDAC6-221ENST00000477561 RPS6KA4O75676 772 aa11□□□□□ -0.65
HDAC6-221ENST00000477561 TTC5Q8N0Z6 440 aa11□□□□□ -0.65
HDAC6-221ENST00000477561 RTF1Q92541 710 aaKnown RBP11□□□□□ -0.65
HDAC6-221ENST00000477561 CNTNAP4Q9C0A0 1308 aa11□□□□□ -0.65
HDAC6-221ENST00000477561 VIRMAQ69YN4 1812 aaKnown RBP11□□□□□ -0.65
HDAC6-221ENST00000477561 ADAMTS7Q9UKP4 1686 aa10.99□□□□□ -0.65
HDAC6-221ENST00000477561 KCNQ3O43525 872 aa10.99□□□□□ -0.65
HDAC6-221ENST00000477561 NEFMP07197 916 aa10.99□□□□□ -0.65
HDAC6-221ENST00000477561 INTS5Q6P9B9 1019 aaKnown RBP10.99□□□□□ -0.65
HDAC6-221ENST00000477561 NLGN2Q8NFZ4 835 aa10.99□□□□□ -0.65
HDAC6-221ENST00000477561 MYBBP1AQ9BQG0 1328 aaKnown RBP10.99□□□□□ -0.65
HDAC6-221ENST00000477561 BTBD11A6QL63 1104 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 CYP19A1P11511 503 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-221ENST00000477561 RFC4P35249 363 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 ZNF790Q6PG37 636 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 PELP1Q8IZL8 1130 aaKnown RBP10.98□□□□□ -0.65
HDAC6-221ENST00000477561 ZNF496Q96IT1 587 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-221ENST00000477561 PLEKHF1Q96S99 279 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 CCDC87Q9NVE4 849 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 SRP68Q9UHB9 627 aaKnown RBP10.98□□□□□ -0.65
HDAC6-221ENST00000477561 KCPQ6ZWJ8 1503 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 ZNF831Q5JPB2 1677 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 COL5A3P25940 1745 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-221ENST00000477561 TJP1Q07157 1748 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 COL24A1Q17RW2 1714 aa10.98□□□□□ -0.65
HDAC6-221ENST00000477561 PRKRIP1Q9H875 184 aaPredicted RBP10.97□□□□□ -0.65
HDAC6-221ENST00000477561 MIS18AQ9NYP9 233 aa10.97□□□□□ -0.65
HDAC6-221ENST00000477561 CEMIPQ8WUJ3 1361 aa10.97□□□□□ -0.65
HDAC6-221ENST00000477561 MYH14Q7Z406 1995 aaKnown RBP10.97□□□□□ -0.65
HDAC6-221ENST00000477561 MAPK8IP3Q9UPT6 1336 aa10.96□□□□□ -0.65
HDAC6-221ENST00000477561 MMP10P09238 476 aa10.96□□□□□ -0.65
HDAC6-221ENST00000477561 GYS1P13807 737 aa10.96□□□□□ -0.65
HDAC6-221ENST00000477561 CANXP27824 592 aaKnown RBP10.96□□□□□ -0.65
HDAC6-221ENST00000477561 VSIG10Q8N0Z9 540 aa10.96□□□□□ -0.65
HDAC6-221ENST00000477561 ZBTB1Q9Y2K1 713 aa10.96□□□□□ -0.65
HDAC6-221ENST00000477561 HEG1Q9ULI3 1381 aa10.95□□□□□ -0.66
HDAC6-221ENST00000477561 HTATSF1O43719 755 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms