RNA–Protein interactions for RNA: ENST00000466624.1

GPC1-207, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 782 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-207ENST00000466624 LY75O60449 1722 aa21.01■□□□□ 0.95
GPC1-207ENST00000466624 DCTN1Q14203 1278 aa21■□□□□ 0.95
GPC1-207ENST00000466624 NFATC2IPQ8NCF5 419 aa21■□□□□ 0.95
GPC1-207ENST00000466624 PIGBQ92521 554 aa21■□□□□ 0.95
GPC1-207ENST00000466624 UPF1Q92900 1129 aaKnown RBP eCLIP21■□□□□ 0.952e-11■■■■■ 40.2
GPC1-207ENST00000466624 SF3B2Q13435 895 aaKnown RBP20.99■□□□□ 0.95
GPC1-207ENST00000466624 PTF1AQ7RTS3 328 aa20.99■□□□□ 0.95
GPC1-207ENST00000466624 UBR2Q8IWV8 1755 aa20.99■□□□□ 0.95
GPC1-207ENST00000466624 KDM3BQ7LBC6 1761 aa20.98■□□□□ 0.95
GPC1-207ENST00000466624 ZNF831Q5JPB2 1677 aa20.97■□□□□ 0.95
GPC1-207ENST00000466624 PLSCR1O15162 318 aa20.97■□□□□ 0.95
GPC1-207ENST00000466624 APBA3O96018 575 aa20.96■□□□□ 0.95
GPC1-207ENST00000466624 CALD1Q05682 793 aaKnown RBP20.96■□□□□ 0.95
GPC1-207ENST00000466624 TAF7Q15545 349 aaPredicted RBP20.96■□□□□ 0.95
GPC1-207ENST00000466624 SMARCC1Q92922 1105 aaPredicted RBP20.96■□□□□ 0.95
GPC1-207ENST00000466624 WWC1Q8IX03 1113 aa20.95■□□□□ 0.94
GPC1-207ENST00000466624 THUMPD2Q9BTF0 503 aaKnown RBP20.95■□□□□ 0.94
GPC1-207ENST00000466624 BABAM1Q9NWV8 329 aa20.95■□□□□ 0.94
GPC1-207ENST00000466624 CICQ96RK0 1608 aaPredicted RBP20.95■□□□□ 0.94
GPC1-207ENST00000466624 RREB1Q92766 1687 aa20.94■□□□□ 0.94
GPC1-207ENST00000466624 BAG6P46379 1132 aa20.94■□□□□ 0.94
GPC1-207ENST00000466624 ATG3Q9NT62 314 aa20.94■□□□□ 0.94
GPC1-207ENST00000466624 PALLDQ8WX93 1383 aa20.93■□□□□ 0.94
GPC1-207ENST00000466624 BTBD11A6QL63 1104 aa20.92■□□□□ 0.94
GPC1-207ENST00000466624 WDR63Q8IWG1 891 aa20.92■□□□□ 0.94
GPC1-207ENST00000466624 ASAP1Q9ULH1 1129 aa20.92■□□□□ 0.94
GPC1-207ENST00000466624 IL16Q14005 1332 aa20.92■□□□□ 0.94
GPC1-207ENST00000466624 ZNF521Q96K83 1311 aa20.92■□□□□ 0.94
GPC1-207ENST00000466624 KCPQ6ZWJ8 1503 aa20.92■□□□□ 0.94
GPC1-207ENST00000466624 ZNF790Q6PG37 636 aa20.9■□□□□ 0.94
GPC1-207ENST00000466624 CFAP44Q96MT7 982 aa20.9■□□□□ 0.94
GPC1-207ENST00000466624 CAMKK2Q96RR4 588 aa20.9■□□□□ 0.94
GPC1-207ENST00000466624 IFT57Q9NWB7 429 aa20.9■□□□□ 0.94
GPC1-207ENST00000466624 TAF1LQ8IZX4 1826 aa20.9■□□□□ 0.94
GPC1-207ENST00000466624 SENP3-EIF4A1A0A087X0R7 540 aa20.89■□□□□ 0.93
GPC1-207ENST00000466624 SOCS7O14512 581 aa20.89■□□□□ 0.93
GPC1-207ENST00000466624 ZNF853P0CG23 659 aa20.89■□□□□ 0.93
GPC1-207ENST00000466624 TTC5Q8N0Z6 440 aa20.89■□□□□ 0.93
GPC1-207ENST00000466624 CHL1O00533 1208 aa20.88■□□□□ 0.93
GPC1-207ENST00000466624 GNAI1P63096 354 aa20.88■□□□□ 0.93
GPC1-207ENST00000466624 SLC39A6Q13433 755 aa20.88■□□□□ 0.93
GPC1-207ENST00000466624 SLC27A3Q5K4L6 730 aa20.88■□□□□ 0.93
GPC1-207ENST00000466624 SALL2Q9Y467 1007 aaPredicted RBP20.88■□□□□ 0.93
GPC1-207ENST00000466624 NUP188Q5SRE5 1749 aa20.87■□□□□ 0.93
GPC1-207ENST00000466624 C5P01031 1676 aa20.87■□□□□ 0.93
GPC1-207ENST00000466624 HMGB2P26583 209 aaKnown RBP20.87■□□□□ 0.93
GPC1-207ENST00000466624 EN1Q05925 392 aaPredicted RBP20.87■□□□□ 0.93
GPC1-207ENST00000466624 DEFB132Q7Z7B7 95 aa20.87■□□□□ 0.93
GPC1-207ENST00000466624 COL5A3P25940 1745 aaPredicted RBP20.87■□□□□ 0.93
GPC1-207ENST00000466624 TJP1Q07157 1748 aa20.87■□□□□ 0.93
GPC1-207ENST00000466624 HNRNPUQ00839 825 aaKnown RBP eCLIP20.86■□□□□ 0.93
GPC1-207ENST00000466624 TXNRD1Q16881 649 aa20.86■□□□□ 0.93
GPC1-207ENST00000466624 TSPYL4Q9UJ04 414 aa20.86■□□□□ 0.93
GPC1-207ENST00000466624 LOC102724428A0A0B4J2F2 783 aa20.85■□□□□ 0.93
GPC1-207ENST00000466624 SIK1P57059 783 aa20.85■□□□□ 0.93
GPC1-207ENST00000466624 EZH2Q15910 746 aaKnown RBP20.85■□□□□ 0.93
GPC1-207ENST00000466624 VSIG10Q8N0Z9 540 aa20.85■□□□□ 0.93
GPC1-207ENST00000466624 PROM2Q8N271 834 aa20.85■□□□□ 0.93
GPC1-207ENST00000466624 FMNL2Q96PY5 1086 aa20.84■□□□□ 0.93
GPC1-207ENST00000466624 MIS18AQ9NYP9 233 aa20.84■□□□□ 0.93
GPC1-207ENST00000466624 CCNL1Q9UK58 526 aaPredicted RBP20.84■□□□□ 0.93
GPC1-207ENST00000466624 LAMB4A4D0S4 1761 aa20.84■□□□□ 0.93
GPC1-207ENST00000466624 HEG1Q9ULI3 1381 aa20.84■□□□□ 0.93
GPC1-207ENST00000466624 KCNQ3O43525 872 aa20.83■□□□□ 0.93
GPC1-207ENST00000466624 ZNF496Q96IT1 587 aaPredicted RBP20.83■□□□□ 0.93
GPC1-207ENST00000466624 RBM42Q9BTD8 480 aaKnown RBP20.83■□□□□ 0.93
GPC1-207ENST00000466624 ZBED9Q6R2W3 1325 aa20.82■□□□□ 0.92
GPC1-207ENST00000466624 PTCD1O75127 700 aaKnown RBP20.82■□□□□ 0.92
GPC1-207ENST00000466624 EIF4A1P60842 406 aaKnown RBP20.82■□□□□ 0.92
GPC1-207ENST00000466624 GOLGA2Q08379 1002 aa20.82■□□□□ 0.92
GPC1-207ENST00000466624 SLC4A9Q96Q91 983 aa20.82■□□□□ 0.92
GPC1-207ENST00000466624 MBIPQ9NS73 344 aa20.82■□□□□ 0.92
GPC1-207ENST00000466624 LAS1LQ9Y4W2 734 aaKnown RBP20.82■□□□□ 0.92
GPC1-207ENST00000466624 ATP6V1AP38606 617 aa20.81■□□□□ 0.92
GPC1-207ENST00000466624 LRRC4BQ9NT99 713 aa20.81■□□□□ 0.92
GPC1-207ENST00000466624 C4BP0C0L5 1744 aa20.8■□□□□ 0.92
GPC1-207ENST00000466624 TEX13AQ9BXU3 409 aaPredicted RBP20.79■□□□□ 0.92
GPC1-207ENST00000466624 MYH16Q9H6N6 1097 aa20.79■□□□□ 0.92
GPC1-207ENST00000466624 E9PSI1 815 aa20.78■□□□□ 0.92
GPC1-207ENST00000466624 SNRPA1P09661 255 aaKnown RBP20.78■□□□□ 0.92
GPC1-207ENST00000466624 FANCIQ9NVI1 1328 aa20.78■□□□□ 0.92
GPC1-207ENST00000466624 ITPK1Q13572 414 aa20.77■□□□□ 0.92
GPC1-207ENST00000466624 SPINK5Q9NQ38 1064 aaPredicted RBP20.77■□□□□ 0.92
GPC1-207ENST00000466624 QSER1Q2KHR3 1735 aa20.77■□□□□ 0.92
GPC1-207ENST00000466624 MYH14Q7Z406 1995 aaKnown RBP20.76■□□□□ 0.91
GPC1-207ENST00000466624 GIGYF1O75420 1035 aaPredicted RBP20.76■□□□□ 0.91
GPC1-207ENST00000466624 HOXB7P09629 217 aa20.76■□□□□ 0.91
GPC1-207ENST00000466624 SLFN5Q08AF3 891 aa20.76■□□□□ 0.91
GPC1-207ENST00000466624 SOS1Q07889 1333 aaPredicted RBP20.76■□□□□ 0.91
GPC1-207ENST00000466624 DNAJC10Q8IXB1 793 aa20.75■□□□□ 0.91
GPC1-207ENST00000466624 TSR2Q969E8 191 aaKnown RBP20.75■□□□□ 0.91
GPC1-207ENST00000466624 UBR3Q6ZT12 1888 aa20.75■□□□□ 0.91
GPC1-207ENST00000466624 CNTNAP4Q9C0A0 1308 aa20.75■□□□□ 0.91
GPC1-207ENST00000466624 KCNQ4P56696 695 aa20.74■□□□□ 0.91
GPC1-207ENST00000466624 RC3H1Q5TC82 1133 aaKnown RBP20.74■□□□□ 0.91
GPC1-207ENST00000466624 TRMT2AQ8IZ69 625 aaKnown RBP20.74■□□□□ 0.91
GPC1-207ENST00000466624 LINC00116Q8NCU8 138 aa20.74■□□□□ 0.91
GPC1-207ENST00000466624 TUBGCP6Q96RT7 1819 aa20.74■□□□□ 0.91
GPC1-207ENST00000466624 STARD3NLO95772 234 aa20.73■□□□□ 0.91
GPC1-207ENST00000466624 CYP19A1P11511 503 aaPredicted RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms