RNA–Protein interactions for RNA: ENST00000466579.1

SDCCAG3-208, Transcript of Serologically defined colon cancer antigen 3, human

TSL 1 (best)

Gene SDCCAG3, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCCAG3-208	ENST00000466579	HMGB2	P26583	209 aa	Known RBP	12.63	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	R3HDM1	Q15032	1099 aa	Known RBP	12.63	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	AKT1S1	Q96B36	256 aa		12.63	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	LGR6	Q9HBX8	967 aa		12.63	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	ASAP1	Q9ULH1	1129 aa		12.63	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	GNAT3	A8MTJ3	354 aa		12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	CABP4	P57796	275 aa		12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	SLC15A2	Q16348	729 aa		12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	PNN	Q9H307	717 aa	Known RBP	12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	SLC52A2	Q9HAB3	445 aa		12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	CCNL1	Q9UK58	526 aa	Predicted RBP	12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	DLG5	Q8TDM6	1919 aa		12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	TUBGCP6	Q96RT7	1819 aa		12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	LRP5	O75197	1615 aa		12.62	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	PSD	A5PKW4	1024 aa	Predicted RBP	12.61	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	HTATSF1	O43719	755 aa	Known RBP	12.61	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	NFATC2IP	Q8NCF5	419 aa		12.61	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	IL17RE	Q8NFR9	667 aa		12.61	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	STK32B	Q9NY57	414 aa		12.61	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	UBR2	Q8IWV8	1755 aa		12.61	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	LOC102724428	A0A0B4J2F2	783 aa		12.6	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	SIK1	P57059	783 aa		12.6	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	ZNF827	Q17R98	1081 aa		12.6	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	C4B	P0C0L5	1744 aa		12.59	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	COL5A3	P25940	1745 aa	Predicted RBP	12.59	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	KCNQ4	P56696	695 aa		12.59	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	SLC4A9	Q96Q91	983 aa		12.59	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	SRCAP	Q6ZRS2	3230 aa		12.59	□□□□□ -0.39
SDCCAG3-208	ENST00000466579	KCP	Q6ZWJ8	1503 aa		12.58	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	DCAF8L1	A6NGE4	600 aa		12.58	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	TJP1	Q07157	1748 aa		12.58	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	NFE2L2	Q16236	605 aa		12.58	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	COL24A1	Q17RW2	1714 aa		12.58	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	UBR3	Q6ZT12	1888 aa		12.57	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	ANP32C	O43423	234 aa		12.57	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	ITPK1	Q13572	414 aa		12.57	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	NEFM	P07197	916 aa		12.56	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	LINC00116	Q8NCU8	138 aa		12.56	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	ADAMTS8	Q9UP79	889 aa		12.56	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	PNPLA7	Q6ZV29	1317 aa		12.56	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	ATP6V1A	P38606	617 aa		12.55	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	WDR43	Q15061	677 aa	Known RBP eCLIP	12.55	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	CCDC184	Q52MB2	194 aa		12.55	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	PDGFD	Q9GZP0	370 aa	Predicted RBP	12.55	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	MYH14	Q7Z406	1995 aa	Known RBP	12.55	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	MAPK8IP3	Q9UPT6	1336 aa		12.55	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	TEF	Q10587	303 aa		12.54	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	RC3H1	Q5TC82	1133 aa	Known RBP	12.54	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	MCM10	Q7L590	875 aa		12.54	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	VSIG10	Q8N0Z9	540 aa		12.54	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	RTF1	Q92541	710 aa	Known RBP	12.54	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	RUNDC1	Q96C34	613 aa		12.54	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	CNTNAP4	Q9C0A0	1308 aa		12.54	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	TMPO	P42166	694 aa	Known RBP	12.53	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	SLC39A6	Q13433	755 aa		12.53	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	ZNF790	Q6PG37	636 aa		12.53	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	PNISR	Q8TF01	805 aa	Known RBP	12.53	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	SLC16A10	Q8TF71	515 aa		12.53	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	RBM42	Q9BTD8	480 aa	Known RBP	12.53	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	TFCP2L1	Q9NZI6	479 aa		12.53	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	KDM3B	Q7LBC6	1761 aa		12.53	□□□□□ -0.4
SDCCAG3-208	ENST00000466579	PTCD1	O75127	700 aa	Known RBP	12.52	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	DCTN1	Q14203	1278 aa		12.52	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	AMIGO3	Q86WK7	504 aa		12.52	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	FLAD1	Q8NFF5	587 aa		12.52	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	SGIP1	Q9BQI5	828 aa		12.52	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	SSFA2	P28290	1259 aa		12.51	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	TAF7	Q15545	349 aa	Predicted RBP	12.51	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	COL23A1	Q86Y22	540 aa	Predicted RBP	12.51	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	AK7	Q96M32	723 aa		12.51	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	MTFR1L	Q9H019	292 aa		12.51	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	SPON1	Q9HCB6	807 aa		12.51	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	BTBD11	A6QL63	1104 aa		12.5	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	HOXD11	P31277	338 aa	Predicted RBP	12.5	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	PTGER2	P43116	358 aa		12.5	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	RIPK4	P57078	832 aa		12.5	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	LMOD3	Q0VAK6	560 aa		12.5	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	CCDC146	Q8IYE0	955 aa		12.5	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	ZNF496	Q96IT1	587 aa	Predicted RBP	12.5	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	HEG1	Q9ULI3	1381 aa		12.5	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	KCNQ3	O43525	872 aa		12.49	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	CYP19A1	P11511	503 aa	Predicted RBP	12.49	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	DNAJC10	Q8IXB1	793 aa		12.49	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	TTC5	Q8N0Z6	440 aa		12.49	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	FMNL2	Q96PY5	1086 aa		12.49	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	MRS2	Q9HD23	443 aa		12.49	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	BABAM1	Q9NWV8	329 aa		12.49	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	TRIM35	Q9UPQ4	493 aa		12.49	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	GNPAT	O15228	680 aa		12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	RPS6KA4	O75676	772 aa		12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	ZBTB7A	O95365	584 aa		12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	CRKL	P46109	303 aa	Known RBP	12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	NCBP3	Q53F19	620 aa	Known RBP	12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	INTS5	Q6P9B9	1019 aa	Known RBP	12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	RNF39	Q9H2S5	420 aa		12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	C4A	P0C0L4	1744 aa		12.48	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	PPP4R3CP	Q6ZMV5	832 aa		12.47	□□□□□ -0.41
SDCCAG3-208	ENST00000466579	THUMPD2	Q9BTF0	503 aa	Known RBP	12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms