RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 TOGARAM1Q9Y4F4 1720 aa16.51■□□□□ 0.23
SCLT1-202ENST00000439369 DOT1LQ8TEK3 1739 aa16.5■□□□□ 0.23
SCLT1-202ENST00000439369 BRWD3Q6RI45 1802 aa16.49■□□□□ 0.23
SCLT1-202ENST00000439369 FAM196AQ6ZSG2 479 aa16.49■□□□□ 0.23
SCLT1-202ENST00000439369 TMOD3Q9NYL9 352 aa16.49■□□□□ 0.23
SCLT1-202ENST00000439369 NFATC2IPQ8NCF5 419 aa16.48■□□□□ 0.23
SCLT1-202ENST00000439369 NHSQ6T4R5 1651 aa16.48■□□□□ 0.23
SCLT1-202ENST00000439369 FANCIQ9NVI1 1328 aa16.47■□□□□ 0.23
SCLT1-202ENST00000439369 KDM3BQ7LBC6 1761 aa16.47■□□□□ 0.23
SCLT1-202ENST00000439369 BTBD11A6QL63 1104 aa16.47■□□□□ 0.23
SCLT1-202ENST00000439369 DUSP27Q5VZP5 1158 aa16.47■□□□□ 0.23
SCLT1-202ENST00000439369 CDCA7LQ96GN5 454 aa16.47■□□□□ 0.23
SCLT1-202ENST00000439369 SPINK5Q9NQ38 1064 aaPredicted RBP16.47■□□□□ 0.23
SCLT1-202ENST00000439369 TSPYL4Q9UJ04 414 aa16.47■□□□□ 0.23
SCLT1-202ENST00000439369 SOS1Q07889 1333 aaPredicted RBP16.46■□□□□ 0.23
SCLT1-202ENST00000439369 PAPPAQ13219 1627 aa16.46■□□□□ 0.23
SCLT1-202ENST00000439369 MBIPQ9NS73 344 aa16.46■□□□□ 0.23
SCLT1-202ENST00000439369 ITGB4P16144 1822 aa16.46■□□□□ 0.23
SCLT1-202ENST00000439369 CT47B1P0C2W7 299 aaPredicted RBP16.45■□□□□ 0.22
SCLT1-202ENST00000439369 PRIM1P49642 420 aaKnown RBP16.45■□□□□ 0.22
SCLT1-202ENST00000439369 LAS1LQ9Y4W2 734 aaKnown RBP16.45■□□□□ 0.22
SCLT1-202ENST00000439369 ZNF790Q6PG37 636 aa16.44■□□□□ 0.22
SCLT1-202ENST00000439369 PIGBQ92521 554 aa16.44■□□□□ 0.22
SCLT1-202ENST00000439369 TTC5Q8N0Z6 440 aa16.43■□□□□ 0.22
SCLT1-202ENST00000439369 SMARCC1Q92922 1105 aaPredicted RBP16.43■□□□□ 0.22
SCLT1-202ENST00000439369 TSR2Q969E8 191 aaKnown RBP16.43■□□□□ 0.22
SCLT1-202ENST00000439369 CHMP4AQ9BY43 222 aa16.43■□□□□ 0.22
SCLT1-202ENST00000439369 BCL11BQ9C0K0 894 aaPredicted RBP16.43■□□□□ 0.22
SCLT1-202ENST00000439369 SBF2Q86WG5 1849 aa16.42■□□□□ 0.22
SCLT1-202ENST00000439369 HEG1Q9ULI3 1381 aa16.42■□□□□ 0.22
SCLT1-202ENST00000439369 UBR2Q8IWV8 1755 aa16.42■□□□□ 0.22
SCLT1-202ENST00000439369 CENPBP07199 599 aaPredicted RBP16.42■□□□□ 0.22
SCLT1-202ENST00000439369 HOXB7P09629 217 aa16.42■□□□□ 0.22
SCLT1-202ENST00000439369 ZNF428Q96B54 188 aa16.42■□□□□ 0.22
SCLT1-202ENST00000439369 SYTL4Q96C24 671 aaPredicted RBP16.42■□□□□ 0.22
SCLT1-202ENST00000439369 EIF4A1P60842 406 aaKnown RBP16.41■□□□□ 0.22
SCLT1-202ENST00000439369 ACSBG1Q96GR2 724 aa16.41■□□□□ 0.22
SCLT1-202ENST00000439369 FMNL2Q96PY5 1086 aa16.4■□□□□ 0.22
SCLT1-202ENST00000439369 ATG3Q9NT62 314 aa16.4■□□□□ 0.22
SCLT1-202ENST00000439369 MIS18AQ9NYP9 233 aa16.4■□□□□ 0.22
SCLT1-202ENST00000439369 KCPQ6ZWJ8 1503 aa16.4■□□□□ 0.22
SCLT1-202ENST00000439369 KCNQ2O43526 872 aa16.39■□□□□ 0.21
SCLT1-202ENST00000439369 EXOSC9Q06265 439 aaKnown RBP16.39■□□□□ 0.21
SCLT1-202ENST00000439369 FAM182BQ5T319 152 aa16.39■□□□□ 0.21
SCLT1-202ENST00000439369 VSIG10Q8N0Z9 540 aa16.39■□□□□ 0.21
SCLT1-202ENST00000439369 ZNF831Q5JPB2 1677 aa16.39■□□□□ 0.21
SCLT1-202ENST00000439369 BTAF1O14981 1849 aa16.38■□□□□ 0.21
SCLT1-202ENST00000439369 CICQ96RK0 1608 aaPredicted RBP16.38■□□□□ 0.21
SCLT1-202ENST00000439369 SLC39A6Q13433 755 aa16.38■□□□□ 0.21
SCLT1-202ENST00000439369 ASAP1Q9ULH1 1129 aa16.38■□□□□ 0.21
SCLT1-202ENST00000439369 HMGB2P26583 209 aaKnown RBP16.37■□□□□ 0.21
SCLT1-202ENST00000439369 TWISTNBQ3B726 338 aaPredicted RBP16.37■□□□□ 0.21
SCLT1-202ENST00000439369 ZNF496Q96IT1 587 aaPredicted RBP16.37■□□□□ 0.21
SCLT1-202ENST00000439369 TEX13AQ9BXU3 409 aaPredicted RBP16.37■□□□□ 0.21
SCLT1-202ENST00000439369 PALLDQ8WX93 1383 aa16.37■□□□□ 0.21
SCLT1-202ENST00000439369 KCNQ3O43525 872 aa16.36■□□□□ 0.21
SCLT1-202ENST00000439369 SNRPA1P09661 255 aaKnown RBP16.36■□□□□ 0.21
SCLT1-202ENST00000439369 C8orf58Q8NAV2 365 aa16.36■□□□□ 0.21
SCLT1-202ENST00000439369 GIGYF1O75420 1035 aaPredicted RBP16.35■□□□□ 0.21
SCLT1-202ENST00000439369 VAMP4O75379 141 aa16.34■□□□□ 0.21
SCLT1-202ENST00000439369 LAMB4A4D0S4 1761 aa16.33■□□□□ 0.21
SCLT1-202ENST00000439369 PTCD1O75127 700 aaKnown RBP16.33■□□□□ 0.2
SCLT1-202ENST00000439369 TRIM37O94972 964 aa16.33■□□□□ 0.2
SCLT1-202ENST00000439369 ALDH1L2Q3SY69 923 aa16.33■□□□□ 0.2
SCLT1-202ENST00000439369 TSPYL6Q8N831 410 aa16.33■□□□□ 0.2
SCLT1-202ENST00000439369 RGPD3A6NKT7 1758 aaPredicted RBP16.33■□□□□ 0.2
SCLT1-202ENST00000439369 RGPD4Q7Z3J3 1758 aa16.33■□□□□ 0.2
SCLT1-202ENST00000439369 LOC102724428A0A0B4J2F2 783 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 PLSCR1O15162 318 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 LY75O60449 1722 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 SIK1P57059 783 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 ERBB4Q15303 1308 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 KRT24Q2M2I5 525 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 CCDC30Q5VVM6 783 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 CCDC125Q86Z20 511 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 TNS1Q9HBL0 1735 aaKnown RBP16.32■□□□□ 0.2
SCLT1-202ENST00000439369 RCAN3Q9UKA8 241 aa16.32■□□□□ 0.2
SCLT1-202ENST00000439369 KAT6BQ8WYB5 2073 aa16.31■□□□□ 0.2
SCLT1-202ENST00000439369 PTF1AQ7RTS3 328 aa16.31■□□□□ 0.2
SCLT1-202ENST00000439369 RBM42Q9BTD8 480 aaKnown RBP16.31■□□□□ 0.2
SCLT1-202ENST00000439369 ELL2O00472 640 aaPredicted RBP16.3■□□□□ 0.2
SCLT1-202ENST00000439369 STARD3NLO95772 234 aa16.3■□□□□ 0.2
SCLT1-202ENST00000439369 RARSP54136 660 aaKnown RBP16.3■□□□□ 0.2
SCLT1-202ENST00000439369 BRPF1P55201 1214 aaPredicted RBP16.3■□□□□ 0.2
SCLT1-202ENST00000439369 SLC27A3Q5K4L6 730 aa16.3■□□□□ 0.2
SCLT1-202ENST00000439369 HDGFL1Q5TGJ6 251 aa16.3■□□□□ 0.2
SCLT1-202ENST00000439369 TJP1Q07157 1748 aa16.3■□□□□ 0.2
SCLT1-202ENST00000439369 C5P01031 1676 aa16.3■□□□□ 0.2
SCLT1-202ENST00000439369 SLC4A9Q96Q91 983 aa16.28■□□□□ 0.2
SCLT1-202ENST00000439369 STK31Q9BXU1 1019 aa16.28■□□□□ 0.2
SCLT1-202ENST00000439369 DBF4Q9UBU7 674 aaPredicted RBP16.28■□□□□ 0.2
SCLT1-202ENST00000439369 APBA3O96018 575 aa16.27■□□□□ 0.2
SCLT1-202ENST00000439369 ATP6V1AP38606 617 aa16.27■□□□□ 0.2
SCLT1-202ENST00000439369 SF3B2Q13435 895 aaKnown RBP16.27■□□□□ 0.2
SCLT1-202ENST00000439369 KIF16BQ96L93 1317 aa16.26■□□□□ 0.19
SCLT1-202ENST00000439369 COL5A3P25940 1745 aaPredicted RBP16.26■□□□□ 0.19
SCLT1-202ENST00000439369 CYP19A1P11511 503 aaPredicted RBP16.26■□□□□ 0.19
SCLT1-202ENST00000439369 DNAJC10Q8IXB1 793 aa16.26■□□□□ 0.19
SCLT1-202ENST00000439369 SSH1Q8WYL5 1049 aa16.26■□□□□ 0.19
SCLT1-202ENST00000439369 DDX21Q9NR30 783 aaKnown RBP eCLIP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms