RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 TAF7Q15545 349 aaPredicted RBP24.03■■□□□ 1.44
HDAC6-208ENST00000438518 TNS1Q9HBL0 1735 aaKnown RBP24.03■■□□□ 1.44
HDAC6-208ENST00000438518 NFATC2IPQ8NCF5 419 aa24.02■■□□□ 1.44
HDAC6-208ENST00000438518 SYTL4Q96C24 671 aaPredicted RBP24.02■■□□□ 1.44
HDAC6-208ENST00000438518 ACSBG1Q96GR2 724 aa24.02■■□□□ 1.44
HDAC6-208ENST00000438518 SALL2Q9Y467 1007 aaPredicted RBP24.02■■□□□ 1.44
HDAC6-208ENST00000438518 RGPD3A6NKT7 1758 aaPredicted RBP24.01■■□□□ 1.43
HDAC6-208ENST00000438518 RGPD4Q7Z3J3 1758 aa24.01■■□□□ 1.43
HDAC6-208ENST00000438518 GNAI1P63096 354 aa24.01■■□□□ 1.43
HDAC6-208ENST00000438518 CFAP44Q96MT7 982 aa24.01■■□□□ 1.43
HDAC6-208ENST00000438518 IFT57Q9NWB7 429 aa24.01■■□□□ 1.43
HDAC6-208ENST00000438518 UBR2Q8IWV8 1755 aa24.01■■□□□ 1.43
HDAC6-208ENST00000438518 EP400Q96L91 3159 aa24■■□□□ 1.43
HDAC6-208ENST00000438518 THUMPD2Q9BTF0 503 aaKnown RBP24■■□□□ 1.43
HDAC6-208ENST00000438518 BTBD11A6QL63 1104 aa23.99■■□□□ 1.43
HDAC6-208ENST00000438518 GOLGA2Q08379 1002 aa23.98■■□□□ 1.43
HDAC6-208ENST00000438518 CCDC125Q86Z20 511 aa23.98■■□□□ 1.43
HDAC6-208ENST00000438518 PIGBQ92521 554 aa23.98■■□□□ 1.43
HDAC6-208ENST00000438518 SMARCC1Q92922 1105 aaPredicted RBP23.98■■□□□ 1.43
HDAC6-208ENST00000438518 ZNF831Q5JPB2 1677 aa23.98■■□□□ 1.43
HDAC6-208ENST00000438518 KCNQ2O43526 872 aa23.97■■□□□ 1.43
HDAC6-208ENST00000438518 LY75O60449 1722 aa23.97■■□□□ 1.43
HDAC6-208ENST00000438518 SENP3-EIF4A1A0A087X0R7 540 aa23.96■■□□□ 1.43
HDAC6-208ENST00000438518 CHL1O00533 1208 aa23.96■■□□□ 1.43
HDAC6-208ENST00000438518 TRIM37O94972 964 aa23.96■■□□□ 1.43
HDAC6-208ENST00000438518 ZNF853P0CG23 659 aa23.96■■□□□ 1.43
HDAC6-208ENST00000438518 CICQ96RK0 1608 aaPredicted RBP23.95■■□□□ 1.43
HDAC6-208ENST00000438518 E9PSI1 815 aa23.95■■□□□ 1.42
HDAC6-208ENST00000438518 TTC5Q8N0Z6 440 aa23.95■■□□□ 1.42
HDAC6-208ENST00000438518 MYH16Q9H6N6 1097 aa23.95■■□□□ 1.42
HDAC6-208ENST00000438518 TSPYL4Q9UJ04 414 aa23.95■■□□□ 1.42
HDAC6-208ENST00000438518 ZNF790Q6PG37 636 aa23.94■■□□□ 1.42
HDAC6-208ENST00000438518 HMGB2P26583 209 aaKnown RBP23.93■■□□□ 1.42
HDAC6-208ENST00000438518 SF3B2Q13435 895 aaKnown RBP23.92■■□□□ 1.42
HDAC6-208ENST00000438518 ATG3Q9NT62 314 aa23.92■■□□□ 1.42
HDAC6-208ENST00000438518 KCPQ6ZWJ8 1503 aa23.92■■□□□ 1.42
HDAC6-208ENST00000438518 PALLDQ8WX93 1383 aa23.91■■□□□ 1.42
HDAC6-208ENST00000438518 PLSCR1O15162 318 aa23.91■■□□□ 1.42
HDAC6-208ENST00000438518 LAS1LQ9Y4W2 734 aaKnown RBP23.91■■□□□ 1.42
HDAC6-208ENST00000438518 SLFN5Q08AF3 891 aa23.89■■□□□ 1.41
HDAC6-208ENST00000438518 VSIG10Q8N0Z9 540 aa23.89■■□□□ 1.41
HDAC6-208ENST00000438518 FMNL2Q96PY5 1086 aa23.89■■□□□ 1.41
HDAC6-208ENST00000438518 MBIPQ9NS73 344 aa23.89■■□□□ 1.41
HDAC6-208ENST00000438518 ASAP1Q9ULH1 1129 aa23.89■■□□□ 1.41
HDAC6-208ENST00000438518 SOS1Q07889 1333 aaPredicted RBP23.88■■□□□ 1.41
HDAC6-208ENST00000438518 YTHDC1Q96MU7 727 aaKnown RBP23.88■■□□□ 1.41
HDAC6-208ENST00000438518 LAMB4A4D0S4 1761 aa23.88■■□□□ 1.41
HDAC6-208ENST00000438518 FANCIQ9NVI1 1328 aa23.87■■□□□ 1.41
HDAC6-208ENST00000438518 APBA3O96018 575 aa23.87■■□□□ 1.41
HDAC6-208ENST00000438518 SLC39A6Q13433 755 aa23.87■■□□□ 1.41
HDAC6-208ENST00000438518 BAG6P46379 1132 aa23.86■■□□□ 1.41
HDAC6-208ENST00000438518 EIF4A1P60842 406 aaKnown RBP23.86■■□□□ 1.41
HDAC6-208ENST00000438518 PTF1AQ7RTS3 328 aa23.86■■□□□ 1.41
HDAC6-208ENST00000438518 TRMT2AQ8IZ69 625 aaKnown RBP23.86■■□□□ 1.41
HDAC6-208ENST00000438518 MIS18AQ9NYP9 233 aa23.86■■□□□ 1.41
HDAC6-208ENST00000438518 HEG1Q9ULI3 1381 aa23.86■■□□□ 1.41
HDAC6-208ENST00000438518 ILDR2Q71H61 639 aa23.85■■□□□ 1.41
HDAC6-208ENST00000438518 TJP1Q07157 1748 aa23.84■■□□□ 1.41
HDAC6-208ENST00000438518 HOXB7P09629 217 aa23.84■■□□□ 1.41
HDAC6-208ENST00000438518 SLC27A3Q5K4L6 730 aa23.84■■□□□ 1.41
HDAC6-208ENST00000438518 TEX13AQ9BXU3 409 aaPredicted RBP23.84■■□□□ 1.41
HDAC6-208ENST00000438518 CHMP4AQ9BY43 222 aa23.84■■□□□ 1.41
HDAC6-208ENST00000438518 SPINK5Q9NQ38 1064 aaPredicted RBP23.84■■□□□ 1.41
HDAC6-208ENST00000438518 LOC102724428A0A0B4J2F2 783 aa23.83■■□□□ 1.41
HDAC6-208ENST00000438518 SIK1P57059 783 aa23.83■■□□□ 1.41
HDAC6-208ENST00000438518 TSR2Q969E8 191 aaKnown RBP23.83■■□□□ 1.41
HDAC6-208ENST00000438518 ZNF496Q96IT1 587 aaPredicted RBP23.83■■□□□ 1.41
HDAC6-208ENST00000438518 COL5A3P25940 1745 aaPredicted RBP23.83■■□□□ 1.41
HDAC6-208ENST00000438518 C5P01031 1676 aa23.83■■□□□ 1.4
HDAC6-208ENST00000438518 RREB1Q92766 1687 aa23.83■■□□□ 1.4
HDAC6-208ENST00000438518 TAF1LQ8IZX4 1826 aa23.82■■□□□ 1.4
HDAC6-208ENST00000438518 CDCA7LQ96GN5 454 aa23.82■■□□□ 1.4
HDAC6-208ENST00000438518 KCNQ3O43525 872 aa23.81■■□□□ 1.4
HDAC6-208ENST00000438518 PTCD1O75127 700 aaKnown RBP23.81■■□□□ 1.4
HDAC6-208ENST00000438518 SNRPA1P09661 255 aaKnown RBP23.81■■□□□ 1.4
HDAC6-208ENST00000438518 DUSP27Q5VZP5 1158 aa23.81■■□□□ 1.4
HDAC6-208ENST00000438518 UPF1Q92900 1129 aaKnown RBP eCLIP23.81■■□□□ 1.4
HDAC6-208ENST00000438518 RBM42Q9BTD8 480 aaKnown RBP23.81■■□□□ 1.4
HDAC6-208ENST00000438518 CT47B1P0C2W7 299 aaPredicted RBP23.8■■□□□ 1.4
HDAC6-208ENST00000438518 GIGYF1O75420 1035 aaPredicted RBP23.79■■□□□ 1.4
HDAC6-208ENST00000438518 CCNL1Q9UK58 526 aaPredicted RBP23.79■■□□□ 1.4
HDAC6-208ENST00000438518 ATP6V1AP38606 617 aa23.78■■□□□ 1.4
HDAC6-208ENST00000438518 TXNRD1Q16881 649 aa23.78■■□□□ 1.4
HDAC6-208ENST00000438518 ZNF428Q96B54 188 aa23.77■■□□□ 1.4
HDAC6-208ENST00000438518 EXOSC9Q06265 439 aaKnown RBP23.76■■□□□ 1.39
HDAC6-208ENST00000438518 CAMKK2Q96RR4 588 aa23.76■■□□□ 1.39
HDAC6-208ENST00000438518 STARD3NLO95772 234 aa23.75■■□□□ 1.39
HDAC6-208ENST00000438518 TWISTNBQ3B726 338 aaPredicted RBP23.75■■□□□ 1.39
HDAC6-208ENST00000438518 SLC4A9Q96Q91 983 aa23.75■■□□□ 1.39
HDAC6-208ENST00000438518 C4BP0C0L5 1744 aa23.74■■□□□ 1.39
HDAC6-208ENST00000438518 NUP188Q5SRE5 1749 aa23.74■■□□□ 1.39
HDAC6-208ENST00000438518 ERBB4Q15303 1308 aa23.74■■□□□ 1.39
HDAC6-208ENST00000438518 CACNA1FO60840 1977 aa23.73■■□□□ 1.39
HDAC6-208ENST00000438518 EN1Q05925 392 aaPredicted RBP23.73■■□□□ 1.39
HDAC6-208ENST00000438518 C8orf58Q8NAV2 365 aa23.73■■□□□ 1.39
HDAC6-208ENST00000438518 DNAJC10Q8IXB1 793 aa23.72■■□□□ 1.39
HDAC6-208ENST00000438518 CNTNAP4Q9C0A0 1308 aa23.72■■□□□ 1.39
HDAC6-208ENST00000438518 ITPK1Q13572 414 aa23.71■■□□□ 1.39
HDAC6-208ENST00000438518 EZH2Q15910 746 aaKnown RBP23.71■■□□□ 1.39
HDAC6-208ENST00000438518 KRT24Q2M2I5 525 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms