RNA–Protein interactions for RNA: ENST00000431390.5

HMGN1-206, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,552 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-206ENST00000431390 RNF123Q5XPI4 1314 aa23.64■■□□□ 1.38
HMGN1-206ENST00000431390 TSR2Q969E8 191 aaKnown RBP23.64■■□□□ 1.37
HMGN1-206ENST00000431390 CEMIPQ8WUJ3 1361 aa23.63■■□□□ 1.37
HMGN1-206ENST00000431390 CT47B1P0C2W7 299 aaPredicted RBP23.63■■□□□ 1.37
HMGN1-206ENST00000431390 IL2RBP14784 551 aa23.63■■□□□ 1.37
HMGN1-206ENST00000431390 IL17REQ8NFR9 667 aa23.61■■□□□ 1.37
HMGN1-206ENST00000431390 LAS1LQ9Y4W2 734 aaKnown RBP23.61■■□□□ 1.37
HMGN1-206ENST00000431390 GTF3C3Q9Y5Q9 886 aa23.61■■□□□ 1.37
HMGN1-206ENST00000431390 CHL1O00533 1208 aa23.6■■□□□ 1.37
HMGN1-206ENST00000431390 MBIPQ9NS73 344 aa23.6■■□□□ 1.37
HMGN1-206ENST00000431390 SCN11AQ9UI33 1791 aa23.59■■□□□ 1.37
HMGN1-206ENST00000431390 NEFLP07196 543 aa23.59■■□□□ 1.37
HMGN1-206ENST00000431390 IFNL2Q8IZJ0 200 aa23.59■■□□□ 1.37
HMGN1-206ENST00000431390 BABAM1Q9NWV8 329 aa23.59■■□□□ 1.37
HMGN1-206ENST00000431390 SHANK3Q9BYB0 1731 aa23.59■■□□□ 1.37
HMGN1-206ENST00000431390 PHKG2P15735 406 aa23.58■■□□□ 1.37
HMGN1-206ENST00000431390 EXOSC9Q06265 439 aaKnown RBP23.58■■□□□ 1.37
HMGN1-206ENST00000431390 ZCRB1Q8TBF4 217 aaKnown RBP23.57■■□□□ 1.36
HMGN1-206ENST00000431390 SPON1Q9HCB6 807 aa23.57■■□□□ 1.36
HMGN1-206ENST00000431390 PPP1R1BQ9UD71 204 aaPredicted RBP23.57■■□□□ 1.36
HMGN1-206ENST00000431390 RNMTO43148 476 aaKnown RBP23.57■■□□□ 1.36
HMGN1-206ENST00000431390 PCDH11XQ9BZA7 1347 aa23.56■■□□□ 1.36
HMGN1-206ENST00000431390 PCDH11YQ9BZA8 1340 aa23.56■■□□□ 1.36
HMGN1-206ENST00000431390 CASZ1Q86V15 1759 aa23.56■■□□□ 1.36
HMGN1-206ENST00000431390 KCNQ2O43526 872 aa23.56■■□□□ 1.36
HMGN1-206ENST00000431390 YY1P25490 414 aa23.56■■□□□ 1.36
HMGN1-206ENST00000431390 SIPA1L3O60292 1781 aaPredicted RBP23.55■■□□□ 1.36
HMGN1-206ENST00000431390 HSP90AB1P08238 724 aaKnown RBP23.55■■□□□ 1.36
HMGN1-206ENST00000431390 MPRIPQ6WCQ1 1025 aa23.55■■□□□ 1.36
HMGN1-206ENST00000431390 LGR6Q9HBX8 967 aa23.55■■□□□ 1.36
HMGN1-206ENST00000431390 CYP27B1O15528 508 aa23.54■■□□□ 1.36
HMGN1-206ENST00000431390 RRP1P56182 461 aaKnown RBP23.54■■□□□ 1.36
HMGN1-206ENST00000431390 TAF7Q15545 349 aaPredicted RBP23.54■■□□□ 1.36
HMGN1-206ENST00000431390 DDB1Q16531 1140 aa23.54■■□□□ 1.36
HMGN1-206ENST00000431390 CDCA7Q9BWT1 371 aaPredicted RBP23.53■■□□□ 1.36
HMGN1-206ENST00000431390 KDM3BQ7LBC6 1761 aa23.53■■□□□ 1.36
HMGN1-206ENST00000431390 KDM6AO15550 1401 aaPredicted RBP23.53■■□□□ 1.36
HMGN1-206ENST00000431390 PTF1AQ7RTS3 328 aa23.52■■□□□ 1.36
HMGN1-206ENST00000431390 ZNF428Q96B54 188 aa23.52■■□□□ 1.36
HMGN1-206ENST00000431390 TSPYL4Q9UJ04 414 aa23.52■■□□□ 1.36
HMGN1-206ENST00000431390 RARSP54136 660 aaKnown RBP23.52■■□□□ 1.36
HMGN1-206ENST00000431390 TEFQ10587 303 aa23.52■■□□□ 1.36
HMGN1-206ENST00000431390 DCAF5Q96JK2 942 aa23.52■■□□□ 1.36
HMGN1-206ENST00000431390 ANO8Q9HCE9 1232 aaPredicted RBP23.52■■□□□ 1.36
HMGN1-206ENST00000431390 MRC1P22897 1456 aa23.51■■□□□ 1.35
HMGN1-206ENST00000431390 PLSCR1O15162 318 aa23.51■■□□□ 1.35
HMGN1-206ENST00000431390 NKX1-1Q15270 411 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-206ENST00000431390 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-206ENST00000431390 FKBP8Q14318 412 aa23.48■■□□□ 1.35
HMGN1-206ENST00000431390 TWISTNBQ3B726 338 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-206ENST00000431390 MARCH10Q8NA82 808 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-206ENST00000431390 BCL11BQ9C0K0 894 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-206ENST00000431390 MIS18AQ9NYP9 233 aa23.48■■□□□ 1.35
HMGN1-206ENST00000431390 VAMP4O75379 141 aa23.47■■□□□ 1.35
HMGN1-206ENST00000431390 TNS2Q63HR2 1409 aa23.47■■□□□ 1.35
HMGN1-206ENST00000431390 BCAR3O75815 825 aa23.46■■□□□ 1.35
HMGN1-206ENST00000431390 ALDH1L2Q3SY69 923 aa23.46■■□□□ 1.35
HMGN1-206ENST00000431390 C8orf58Q8NAV2 365 aa23.46■■□□□ 1.35
HMGN1-206ENST00000431390 PDGFDQ9GZP0 370 aaPredicted RBP23.46■■□□□ 1.35
HMGN1-206ENST00000431390 SLC52A2Q9HAB3 445 aa23.46■■□□□ 1.35
HMGN1-206ENST00000431390 TSPYL6Q8N831 410 aa23.45■■□□□ 1.34
HMGN1-206ENST00000431390 SOS1Q07889 1333 aaPredicted RBP23.45■■□□□ 1.34
HMGN1-206ENST00000431390 DCAF8L1A6NGE4 600 aa23.44■■□□□ 1.34
HMGN1-206ENST00000431390 ERICH6BQ5W0A0 696 aa23.44■■□□□ 1.34
HMGN1-206ENST00000431390 BCL9O00512 1426 aa23.44■■□□□ 1.34
HMGN1-206ENST00000431390 BTBD11A6QL63 1104 aa23.44■■□□□ 1.34
HMGN1-206ENST00000431390 EXOC5O00471 708 aa23.44■■□□□ 1.34
HMGN1-206ENST00000431390 PROM2Q8N271 834 aa23.44■■□□□ 1.34
HMGN1-206ENST00000431390 DDX54Q8TDD1 881 aaKnown RBP23.44■■□□□ 1.34
HMGN1-206ENST00000431390 SSH1Q8WYL5 1049 aa23.42■■□□□ 1.34
HMGN1-206ENST00000431390 ERVV-2B6SEH9 535 aa23.41■■□□□ 1.34
HMGN1-206ENST00000431390 ZBTB7AO95365 584 aa23.41■■□□□ 1.34
HMGN1-206ENST00000431390 BRPF1P55201 1214 aaPredicted RBP23.41■■□□□ 1.34
HMGN1-206ENST00000431390 IRX6P78412 446 aaPredicted RBP23.41■■□□□ 1.34
HMGN1-206ENST00000431390 SMC4Q9NTJ3 1288 aa23.41■■□□□ 1.34
HMGN1-206ENST00000431390 ELL2O00472 640 aaPredicted RBP23.4■■□□□ 1.34
HMGN1-206ENST00000431390 PLIN1O60240 522 aa23.4■■□□□ 1.34
HMGN1-206ENST00000431390 TOGARAM1Q9Y4F4 1720 aa23.4■■□□□ 1.34
HMGN1-206ENST00000431390 KRT24Q2M2I5 525 aa23.4■■□□□ 1.34
HMGN1-206ENST00000431390 NHSQ6T4R5 1651 aa23.39■■□□□ 1.34
HMGN1-206ENST00000431390 CABP4P57796 275 aa23.39■■□□□ 1.33
HMGN1-206ENST00000431390 EIF4A1P60842 406 aaKnown RBP23.39■■□□□ 1.33
HMGN1-206ENST00000431390 NFATC2IPQ8NCF5 419 aa23.39■■□□□ 1.33
HMGN1-206ENST00000431390 BCL2L13Q9BXK5 485 aa23.39■■□□□ 1.33
HMGN1-206ENST00000431390 TXNRD1Q16881 649 aa23.38■■□□□ 1.33
HMGN1-206ENST00000431390 KIF16BQ96L93 1317 aa23.37■■□□□ 1.33
HMGN1-206ENST00000431390 HOXB7P09629 217 aa23.36■■□□□ 1.33
HMGN1-206ENST00000431390 ATF5Q9Y2D1 282 aaPredicted RBP23.36■■□□□ 1.33
HMGN1-206ENST00000431390 CACNA1FO60840 1977 aa23.36■■□□□ 1.33
HMGN1-206ENST00000431390 PAPPAQ13219 1627 aa23.36■■□□□ 1.33
HMGN1-206ENST00000431390 CANXP27824 592 aaKnown RBP23.35■■□□□ 1.33
HMGN1-206ENST00000431390 PTGER2P43116 358 aa23.35■■□□□ 1.33
HMGN1-206ENST00000431390 STK32BQ9NY57 414 aa23.35■■□□□ 1.33
HMGN1-206ENST00000431390 HEG1Q9ULI3 1381 aa23.35■■□□□ 1.33
HMGN1-206ENST00000431390 PDE3AQ14432 1141 aa23.35■■□□□ 1.33
HMGN1-206ENST00000431390 ZNF790Q6PG37 636 aa23.35■■□□□ 1.33
HMGN1-206ENST00000431390 CHMP4AQ9BY43 222 aa23.35■■□□□ 1.33
HMGN1-206ENST00000431390 ITGB4P16144 1822 aa23.35■■□□□ 1.33
HMGN1-206ENST00000431390 KCNQ3O43525 872 aa23.34■■□□□ 1.33
HMGN1-206ENST00000431390 MRPL50Q8N5N7 158 aaKnown RBP23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms