RNA–Protein interactions for RNA: ENST00000403461.5

CEACAM1-208, Transcript of carcinoembryonic antigen related cell adhesion molecule 1, human

TSL 1 (best) BASIC

Gene CEACAM1, Length 1,263 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CEACAM1-208	ENST00000403461	MROH1	Q8NDA8	1641 aa		10.44	□□□□□ -0.74
CEACAM1-208	ENST00000403461	MSH6	P52701	1360 aa		10.44	□□□□□ -0.74
CEACAM1-208	ENST00000403461	DXO	O77932	396 aa	Known RBP	10.44	□□□□□ -0.74
CEACAM1-208	ENST00000403461	USP17L8	P0C7I0	530 aa		10.44	□□□□□ -0.74
CEACAM1-208	ENST00000403461	RGS17	Q9UGC6	210 aa	Predicted RBP	10.44	□□□□□ -0.74
CEACAM1-208	ENST00000403461	EFCAB6	Q5THR3	1501 aa		10.43	□□□□□ -0.74
CEACAM1-208	ENST00000403461	ABCC5	O15440	1437 aa		10.43	□□□□□ -0.74
CEACAM1-208	ENST00000403461	PPP1R15A	O75807	674 aa	Predicted RBP	10.43	□□□□□ -0.74
CEACAM1-208	ENST00000403461	IDI1	Q13907	227 aa		10.43	□□□□□ -0.74
CEACAM1-208	ENST00000403461	LYPD8	Q6UX82	237 aa		10.43	□□□□□ -0.74
CEACAM1-208	ENST00000403461	SLC26A8	Q96RN1	970 aa		10.43	□□□□□ -0.74
CEACAM1-208	ENST00000403461	SLC52A1	Q9NWF4	448 aa		10.43	□□□□□ -0.74
CEACAM1-208	ENST00000403461	UBR1	Q8IWV7	1749 aa		10.43	□□□□□ -0.74
CEACAM1-208	ENST00000403461	PRDM9	Q9NQV7	894 aa		10.42	□□□□□ -0.74
CEACAM1-208	ENST00000403461	NKTR	P30414	1462 aa	Known RBP	10.42	□□□□□ -0.74
CEACAM1-208	ENST00000403461	DAPK1	P53355	1430 aa		10.41	□□□□□ -0.74
CEACAM1-208	ENST00000403461	RNF223	E7ERA6	249 aa		10.41	□□□□□ -0.74
CEACAM1-208	ENST00000403461	MCM6	Q14566	821 aa		10.41	□□□□□ -0.74
CEACAM1-208	ENST00000403461	SNRK	Q9NRH2	765 aa		10.41	□□□□□ -0.74
CEACAM1-208	ENST00000403461	JCAD	Q9P266	1359 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	LMTK2	Q8IWU2	1503 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	PER1	O15534	1290 aa	Predicted RBP	10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	S1PR4	O95977	384 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	SLC19A1	P41440	591 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	PTPRN	Q16849	979 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	POTEA	Q6S8J7	498 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	C14orf37	Q86TY3	774 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	SLAIN2	Q9P270	581 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	CHIC2	Q9UKJ5	165 aa		10.4	□□□□□ -0.74
CEACAM1-208	ENST00000403461	STRCP1	A6NGW2	1772 aa		10.39	□□□□□ -0.75
CEACAM1-208	ENST00000403461	CEP152	O94986	1710 aa		10.38	□□□□□ -0.75
CEACAM1-208	ENST00000403461	MEX3C	Q5U5Q3	659 aa	Known RBP	10.38	□□□□□ -0.75
CEACAM1-208	ENST00000403461	MTMR14	Q8NCE2	650 aa		10.38	□□□□□ -0.75
CEACAM1-208	ENST00000403461	LRRN4	Q8WUT4	740 aa		10.38	□□□□□ -0.75
CEACAM1-208	ENST00000403461	NOS1	P29475	1434 aa		10.38	□□□□□ -0.75
CEACAM1-208	ENST00000403461	FGD6	Q6ZV73	1430 aa		10.38	□□□□□ -0.75
CEACAM1-208	ENST00000403461	PIK3C2B	O00750	1634 aa		10.37	□□□□□ -0.75
CEACAM1-208	ENST00000403461	LOC105371045	A0A1W2PR82	267 aa		10.37	□□□□□ -0.75
CEACAM1-208	ENST00000403461	ERICH6	Q7L0X2	663 aa		10.37	□□□□□ -0.75
CEACAM1-208	ENST00000403461	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
CEACAM1-208	ENST00000403461	NUDT12	Q9BQG2	462 aa		10.37	□□□□□ -0.75
CEACAM1-208	ENST00000403461	ADGRB3	O60242	1522 aa		10.37	□□□□□ -0.75
CEACAM1-208	ENST00000403461	PLEKHG1	Q9ULL1	1385 aa		10.37	□□□□□ -0.75
CEACAM1-208	ENST00000403461	RPRD2	Q5VT52	1461 aa	Known RBP	10.36	□□□□□ -0.75
CEACAM1-208	ENST00000403461	SPATA31A6	Q5VVP1	1343 aa		10.36	□□□□□ -0.75
CEACAM1-208	ENST00000403461	APBB1	O00213	710 aa		10.36	□□□□□ -0.75
CEACAM1-208	ENST00000403461	CCNYL3	P0C7X3	344 aa		10.36	□□□□□ -0.75
CEACAM1-208	ENST00000403461	ZNF772	Q68DY9	489 aa	Predicted RBP	10.36	□□□□□ -0.75
CEACAM1-208	ENST00000403461	PTPN23	Q9H3S7	1636 aa		10.36	□□□□□ -0.75
CEACAM1-208	ENST00000403461	NCOA3	Q9Y6Q9	1424 aa		10.35	□□□□□ -0.75
CEACAM1-208	ENST00000403461	PPEF1	O14829	653 aa	Predicted RBP	10.35	□□□□□ -0.75
CEACAM1-208	ENST00000403461	ATF3	P18847	181 aa		10.35	□□□□□ -0.75
CEACAM1-208	ENST00000403461	ZNF787	Q6DD87	383 aa		10.35	□□□□□ -0.75
CEACAM1-208	ENST00000403461	HMX1	Q9NP08	348 aa	Predicted RBP	10.35	□□□□□ -0.75
CEACAM1-208	ENST00000403461	EVA1B	Q9NVM1	165 aa		10.35	□□□□□ -0.75
CEACAM1-208	ENST00000403461	TET3	O43151	1660 aa		10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	KDM5A	P29375	1690 aa	Known RBP	10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	RIMS2	Q9UQ26	1411 aa		10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	F12	P00748	615 aa	Predicted RBP	10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	FAM50A	Q14320	339 aa	Known RBP	10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	GJD4	Q96KN9	370 aa	Predicted RBP	10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	TBX22	Q9Y458	520 aa		10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	NWD1	Q149M9	1564 aa		10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	ROBO1	Q9Y6N7	1651 aa		10.34	□□□□□ -0.75
CEACAM1-208	ENST00000403461	ANKRD50	Q9ULJ7	1429 aa		10.33	□□□□□ -0.76
CEACAM1-208	ENST00000403461	ANKLE1	Q8NAG6	615 aa		10.33	□□□□□ -0.76
CEACAM1-208	ENST00000403461	TRIM34	Q9BYJ4	488 aa		10.33	□□□□□ -0.76
CEACAM1-208	ENST00000403461	C19orf44	Q9H6X5	657 aa		10.33	□□□□□ -0.76
CEACAM1-208	ENST00000403461	FCF1	Q9Y324	198 aa	Known RBP	10.33	□□□□□ -0.76
CEACAM1-208	ENST00000403461	ADGRL2	O95490	1459 aa		10.32	□□□□□ -0.76
CEACAM1-208	ENST00000403461	CTH	P32929	405 aa		10.32	□□□□□ -0.76
CEACAM1-208	ENST00000403461	KCNH2	Q12809	1159 aa		10.32	□□□□□ -0.76
CEACAM1-208	ENST00000403461	SPRYD7	Q5W111	196 aa		10.32	□□□□□ -0.76
CEACAM1-208	ENST00000403461	CCDC24	Q8N4L8	307 aa		10.32	□□□□□ -0.76
CEACAM1-208	ENST00000403461	PRM3	Q9NNZ6	103 aa		10.32	□□□□□ -0.76
CEACAM1-208	ENST00000403461	ZFYVE9	O95405	1425 aa		10.32	□□□□□ -0.76
CEACAM1-208	ENST00000403461	CROCC2	H7BZ55	1655 aa		10.31	□□□□□ -0.76
CEACAM1-208	ENST00000403461	PIK3R4	Q99570	1358 aa		10.31	□□□□□ -0.76
CEACAM1-208	ENST00000403461	NR6A1	Q15406	480 aa		10.31	□□□□□ -0.76
CEACAM1-208	ENST00000403461	PKDCC	Q504Y2	493 aa		10.31	□□□□□ -0.76
CEACAM1-208	ENST00000403461	TRIM67	Q6ZTA4	783 aa		10.31	□□□□□ -0.76
CEACAM1-208	ENST00000403461	EMID1	Q96A84	441 aa	Predicted RBP	10.31	□□□□□ -0.76
CEACAM1-208	ENST00000403461	MAP10	Q9P2G4	905 aa		10.31	□□□□□ -0.76
CEACAM1-208	ENST00000403461	ZNF598	Q86UK7	904 aa	Known RBP	10.3	□□□□□ -0.76
CEACAM1-208	ENST00000403461	TRIM52	Q96A61	297 aa		10.3	□□□□□ -0.76
CEACAM1-208	ENST00000403461	RXRB	P28702	533 aa		10.29	□□□□□ -0.76
CEACAM1-208	ENST00000403461	ZNF697	Q5TEC3	545 aa		10.29	□□□□□ -0.76
CEACAM1-208	ENST00000403461	EPS8L1	Q8TE68	723 aa		10.29	□□□□□ -0.76
CEACAM1-208	ENST00000403461	NDUFB9	Q9Y6M9	179 aa		10.29	□□□□□ -0.76
CEACAM1-208	ENST00000403461	RAD21	O60216	631 aa		10.28	□□□□□ -0.76
CEACAM1-208	ENST00000403461	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.28	□□□□□ -0.76
CEACAM1-208	ENST00000403461	LIAT1	Q6ZQX7	453 aa		10.28	□□□□□ -0.76
CEACAM1-208	ENST00000403461	PNMA1	Q8ND90	353 aa		10.28	□□□□□ -0.76
CEACAM1-208	ENST00000403461	COG6	Q9Y2V7	657 aa		10.28	□□□□□ -0.76
CEACAM1-208	ENST00000403461	PHLPP1	O60346	1717 aa		10.27	□□□□□ -0.76
CEACAM1-208	ENST00000403461	TIMELESS	Q9UNS1	1208 aa		10.27	□□□□□ -0.77
CEACAM1-208	ENST00000403461	AMOTL2	Q9Y2J4	779 aa		10.27	□□□□□ -0.77
CEACAM1-208	ENST00000403461	XIRP1	Q702N8	1843 aa	Known RBP	10.27	□□□□□ -0.77
CEACAM1-208	ENST00000403461	DIP2A	Q14689	1571 aa		10.26	□□□□□ -0.77
CEACAM1-208	ENST00000403461	LRP6	O75581	1613 aa		10.26	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms