RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 APBA3O96018 575 aa20.92■□□□□ 0.94
HMGA1-204ENST00000401473 TMOD3Q9NYL9 352 aa20.92■□□□□ 0.94
HMGA1-204ENST00000401473 NHSQ6T4R5 1651 aa20.92■□□□□ 0.94
HMGA1-204ENST00000401473 TEFQ10587 303 aa20.92■□□□□ 0.94
HMGA1-204ENST00000401473 TNS1Q9HBL0 1735 aaKnown RBP20.91■□□□□ 0.94
HMGA1-204ENST00000401473 HNRNPUQ00839 825 aaKnown RBP eCLIP20.9■□□□□ 0.94
HMGA1-204ENST00000401473 MIS18AQ9NYP9 233 aa20.9■□□□□ 0.94
HMGA1-204ENST00000401473 ASAP1Q9ULH1 1129 aa20.9■□□□□ 0.94
HMGA1-204ENST00000401473 TAF7Q15545 349 aaPredicted RBP20.9■□□□□ 0.94
HMGA1-204ENST00000401473 ZNF521Q96K83 1311 aa20.89■□□□□ 0.94
HMGA1-204ENST00000401473 SIPA1L3O60292 1781 aaPredicted RBP20.89■□□□□ 0.93
HMGA1-204ENST00000401473 MRC1P22897 1456 aa20.89■□□□□ 0.93
HMGA1-204ENST00000401473 EN1Q05925 392 aaPredicted RBP20.89■□□□□ 0.93
HMGA1-204ENST00000401473 SLC39A6Q13433 755 aa20.89■□□□□ 0.93
HMGA1-204ENST00000401473 SF3B2Q13435 895 aaKnown RBP20.89■□□□□ 0.93
HMGA1-204ENST00000401473 NGEFQ8N5V2 710 aa20.89■□□□□ 0.93
HMGA1-204ENST00000401473 BTAF1O14981 1849 aa20.88■□□□□ 0.93
HMGA1-204ENST00000401473 ATG3Q9NT62 314 aa20.88■□□□□ 0.93
HMGA1-204ENST00000401473 BTBD11A6QL63 1104 aa20.86■□□□□ 0.93
HMGA1-204ENST00000401473 KCNQ3O43525 872 aa20.86■□□□□ 0.93
HMGA1-204ENST00000401473 PROM2Q8N271 834 aa20.86■□□□□ 0.93
HMGA1-204ENST00000401473 CAMKK2Q96RR4 588 aa20.86■□□□□ 0.93
HMGA1-204ENST00000401473 SPINK5Q9NQ38 1064 aaPredicted RBP20.86■□□□□ 0.93
HMGA1-204ENST00000401473 PLSCR1O15162 318 aa20.86■□□□□ 0.93
HMGA1-204ENST00000401473 ZNF853P0CG23 659 aa20.85■□□□□ 0.93
HMGA1-204ENST00000401473 BAG6P46379 1132 aa20.85■□□□□ 0.93
HMGA1-204ENST00000401473 EZH2Q15910 746 aaKnown RBP20.85■□□□□ 0.93
HMGA1-204ENST00000401473 WDR63Q8IWG1 891 aa20.85■□□□□ 0.93
HMGA1-204ENST00000401473 LAS1LQ9Y4W2 734 aaKnown RBP20.85■□□□□ 0.93
HMGA1-204ENST00000401473 CHL1O00533 1208 aa20.84■□□□□ 0.93
HMGA1-204ENST00000401473 ZNF790Q6PG37 636 aa20.84■□□□□ 0.93
HMGA1-204ENST00000401473 CFAP44Q96MT7 982 aa20.84■□□□□ 0.93
HMGA1-204ENST00000401473 PTCD1O75127 700 aaKnown RBP20.81■□□□□ 0.92
HMGA1-204ENST00000401473 KCNQ4P56696 695 aa20.81■□□□□ 0.92
HMGA1-204ENST00000401473 CALD1Q05682 793 aaKnown RBP20.81■□□□□ 0.92
HMGA1-204ENST00000401473 CDCA7LQ96GN5 454 aa20.81■□□□□ 0.92
HMGA1-204ENST00000401473 SLC4A9Q96Q91 983 aa20.81■□□□□ 0.92
HMGA1-204ENST00000401473 IFT57Q9NWB7 429 aa20.81■□□□□ 0.92
HMGA1-204ENST00000401473 TSPYL4Q9UJ04 414 aa20.81■□□□□ 0.92
HMGA1-204ENST00000401473 SRCAPQ6ZRS2 3230 aa20.81■□□□□ 0.92
HMGA1-204ENST00000401473 PALLDQ8WX93 1383 aa20.8■□□□□ 0.92
HMGA1-204ENST00000401473 TXNRD1Q16881 649 aa20.8■□□□□ 0.92
HMGA1-204ENST00000401473 MBIPQ9NS73 344 aa20.8■□□□□ 0.92
HMGA1-204ENST00000401473 IL16Q14005 1332 aa20.79■□□□□ 0.92
HMGA1-204ENST00000401473 ZNF496Q96IT1 587 aaPredicted RBP20.79■□□□□ 0.92
HMGA1-204ENST00000401473 YTHDC1Q96MU7 727 aaKnown RBP20.79■□□□□ 0.92
HMGA1-204ENST00000401473 LRRC4BQ9NT99 713 aa20.79■□□□□ 0.92
HMGA1-204ENST00000401473 BABAM1Q9NWV8 329 aa20.79■□□□□ 0.92
HMGA1-204ENST00000401473 GNAI1P63096 354 aa20.79■□□□□ 0.92
HMGA1-204ENST00000401473 SMARCC1Q92922 1105 aaPredicted RBP20.79■□□□□ 0.92
HMGA1-204ENST00000401473 TSR2Q969E8 191 aaKnown RBP20.79■□□□□ 0.92
HMGA1-204ENST00000401473 PAPPAQ13219 1627 aa20.78■□□□□ 0.92
HMGA1-204ENST00000401473 GOLGA2Q08379 1002 aa20.78■□□□□ 0.92
HMGA1-204ENST00000401473 RBM42Q9BTD8 480 aaKnown RBP20.78■□□□□ 0.92
HMGA1-204ENST00000401473 LOC102724428A0A0B4J2F2 783 aa20.77■□□□□ 0.92
HMGA1-204ENST00000401473 SIK1P57059 783 aa20.77■□□□□ 0.92
HMGA1-204ENST00000401473 TTC5Q8N0Z6 440 aa20.77■□□□□ 0.92
HMGA1-204ENST00000401473 KDM3BQ7LBC6 1761 aa20.77■□□□□ 0.92
HMGA1-204ENST00000401473 ZBED9Q6R2W3 1325 aa20.77■□□□□ 0.92
HMGA1-204ENST00000401473 EIF4A1P60842 406 aaKnown RBP20.77■□□□□ 0.92
HMGA1-204ENST00000401473 KRT24Q2M2I5 525 aa20.76■□□□□ 0.91
HMGA1-204ENST00000401473 UBR2Q8IWV8 1755 aa20.76■□□□□ 0.91
HMGA1-204ENST00000401473 LY75O60449 1722 aa20.76■□□□□ 0.91
HMGA1-204ENST00000401473 KCPQ6ZWJ8 1503 aa20.76■□□□□ 0.91
HMGA1-204ENST00000401473 SLFN5Q08AF3 891 aa20.75■□□□□ 0.91
HMGA1-204ENST00000401473 PRAMEF22A3QJZ6 481 aa20.75■□□□□ 0.91
HMGA1-204ENST00000401473 RGPD3A6NKT7 1758 aaPredicted RBP20.74■□□□□ 0.91
HMGA1-204ENST00000401473 RGPD4Q7Z3J3 1758 aa20.74■□□□□ 0.91
HMGA1-204ENST00000401473 FMNL2Q96PY5 1086 aa20.74■□□□□ 0.91
HMGA1-204ENST00000401473 CCNL1Q9UK58 526 aaPredicted RBP20.74■□□□□ 0.91
HMGA1-204ENST00000401473 HEG1Q9ULI3 1381 aa20.74■□□□□ 0.91
HMGA1-204ENST00000401473 ATP6V1AP38606 617 aa20.73■□□□□ 0.91
HMGA1-204ENST00000401473 ITPK1Q13572 414 aa20.73■□□□□ 0.91
HMGA1-204ENST00000401473 TRMT2AQ8IZ69 625 aaKnown RBP20.73■□□□□ 0.91
HMGA1-204ENST00000401473 FANCIQ9NVI1 1328 aa20.73■□□□□ 0.91
HMGA1-204ENST00000401473 E9PSI1 815 aa20.72■□□□□ 0.91
HMGA1-204ENST00000401473 GIGYF1O75420 1035 aaPredicted RBP20.72■□□□□ 0.91
HMGA1-204ENST00000401473 SLC27A3Q5K4L6 730 aa20.72■□□□□ 0.91
HMGA1-204ENST00000401473 C8orf58Q8NAV2 365 aa20.71■□□□□ 0.91
HMGA1-204ENST00000401473 USP16Q9Y5T5 823 aa20.71■□□□□ 0.91
HMGA1-204ENST00000401473 ELL2O00472 640 aaPredicted RBP20.71■□□□□ 0.91
HMGA1-204ENST00000401473 DUSP27Q5VZP5 1158 aa20.71■□□□□ 0.91
HMGA1-204ENST00000401473 VSIG10Q8N0Z9 540 aa20.71■□□□□ 0.91
HMGA1-204ENST00000401473 TSPYL6Q8N831 410 aa20.71■□□□□ 0.91
HMGA1-204ENST00000401473 RREB1Q92766 1687 aa20.7■□□□□ 0.91
HMGA1-204ENST00000401473 DNAJC10Q8IXB1 793 aa20.7■□□□□ 0.9
HMGA1-204ENST00000401473 MYH16Q9H6N6 1097 aa20.7■□□□□ 0.9
HMGA1-204ENST00000401473 SNRPA1P09661 255 aaKnown RBP20.69■□□□□ 0.9
HMGA1-204ENST00000401473 ANO8Q9HCE9 1232 aaPredicted RBP20.69■□□□□ 0.9
HMGA1-204ENST00000401473 NUP188Q5SRE5 1749 aa20.68■□□□□ 0.9
HMGA1-204ENST00000401473 EXOSC9Q06265 439 aaKnown RBP20.68■□□□□ 0.9
HMGA1-204ENST00000401473 LINC00116Q8NCU8 138 aa20.68■□□□□ 0.9
HMGA1-204ENST00000401473 TAF1LQ8IZX4 1826 aa20.68■□□□□ 0.9
HMGA1-204ENST00000401473 MYH14Q7Z406 1995 aaKnown RBP20.67■□□□□ 0.9
HMGA1-204ENST00000401473 ZNF831Q5JPB2 1677 aa20.66■□□□□ 0.9
HMGA1-204ENST00000401473 CYP19A1P11511 503 aaPredicted RBP20.66■□□□□ 0.9
HMGA1-204ENST00000401473 ZNF827Q17R98 1081 aa20.66■□□□□ 0.9
HMGA1-204ENST00000401473 TJP1Q07157 1748 aa20.66■□□□□ 0.9
HMGA1-204ENST00000401473 C5P01031 1676 aa20.65■□□□□ 0.9
HMGA1-204ENST00000401473 AKT1S1Q96B36 256 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms