RNA–Protein interactions for RNA: ENST00000397004.8

NUP98-204, Transcript of nucleoporin 98, humanhuman

TSL 1 (best) BASIC

Gene NUP98, Length 3,923 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-204ENST00000397004 VSIG10Q8N0Z9 540 aa17.06■□□□□ 0.32
NUP98-204ENST00000397004 TNRQ92752 1358 aa17.05■□□□□ 0.32
NUP98-204ENST00000397004 ESYT1Q9BSJ8 1104 aa17.05■□□□□ 0.32
NUP98-204ENST00000397004 ITSN1Q15811 1721 aa17.05■□□□□ 0.32
NUP98-204ENST00000397004 LRSAM1Q6UWE0 723 aa17.05■□□□□ 0.32
NUP98-204ENST00000397004 GDPD2Q9HCC8 539 aa17.05■□□□□ 0.32
NUP98-204ENST00000397004 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.05■□□□□ 0.32
NUP98-204ENST00000397004 GADD45BO75293 160 aaPredicted RBP17.05■□□□□ 0.32
NUP98-204ENST00000397004 CUL4AQ13619 759 aa17.05■□□□□ 0.32
NUP98-204ENST00000397004 ZMYND15Q9H091 742 aa17.05■□□□□ 0.32
NUP98-204ENST00000397004 REC8O95072 547 aa17.04■□□□□ 0.32
NUP98-204ENST00000397004 RNF214Q8ND24 703 aa17.04■□□□□ 0.32
NUP98-204ENST00000397004 DTNBO60941 627 aa17.04■□□□□ 0.32
NUP98-204ENST00000397004 FOXD4L6Q3SYB3 417 aaPredicted RBP17.04■□□□□ 0.32
NUP98-204ENST00000397004 FOXD4L3Q6VB84 417 aaPredicted RBP17.04■□□□□ 0.32
NUP98-204ENST00000397004 RBM10P98175 930 aaKnown RBP17.04■□□□□ 0.32
NUP98-204ENST00000397004 ACEP12821 1306 aa17.04■□□□□ 0.32
NUP98-204ENST00000397004 ZNF500O60304 480 aaPredicted RBP17.03■□□□□ 0.32
NUP98-204ENST00000397004 TPM2P07951 284 aa17.03■□□□□ 0.32
NUP98-204ENST00000397004 CHMLP26374 656 aa17.03■□□□□ 0.32
NUP98-204ENST00000397004 UPF3BQ9BZI7 483 aaKnown RBP17.03■□□□□ 0.32
NUP98-204ENST00000397004 TECPR2O15040 1411 aa17.03■□□□□ 0.32
NUP98-204ENST00000397004 CEP170BQ9Y4F5 1589 aaPredicted RBP17.02■□□□□ 0.32
NUP98-204ENST00000397004 NECTIN2Q92692 538 aa17.02■□□□□ 0.32
NUP98-204ENST00000397004 TCHHQ07283 1943 aa17.02■□□□□ 0.32
NUP98-204ENST00000397004 NALCNQ8IZF0 1738 aa17.02■□□□□ 0.32
NUP98-204ENST00000397004 R3HCC1Q9Y3T6 440 aaKnown RBP17.02■□□□□ 0.31
NUP98-204ENST00000397004 XRN1Q8IZH2 1706 aaKnown RBP17.01■□□□□ 0.31
NUP98-204ENST00000397004 MSNP26038 577 aaKnown RBP17.01■□□□□ 0.31
NUP98-204ENST00000397004 HS1BP3Q53T59 392 aa17.01■□□□□ 0.31
NUP98-204ENST00000397004 JARID2Q92833 1246 aaPredicted RBP17■□□□□ 0.31
NUP98-204ENST00000397004 ZKSCAN5Q9Y2L8 839 aa17■□□□□ 0.31
NUP98-204ENST00000397004 MX1P20591 662 aa17■□□□□ 0.31
NUP98-204ENST00000397004 CASC1Q6TDU7 716 aa17■□□□□ 0.31
NUP98-204ENST00000397004 TSPYL4Q9UJ04 414 aa17■□□□□ 0.31
NUP98-204ENST00000397004 SSH2Q76I76 1423 aa16.99■□□□□ 0.31
NUP98-204ENST00000397004 MPNDQ8N594 471 aa16.99■□□□□ 0.31
NUP98-204ENST00000397004 TOPAZ1Q8N9V7 1692 aa16.99■□□□□ 0.31
NUP98-204ENST00000397004 LARP6Q9BRS8 491 aaKnown RBP16.99■□□□□ 0.31
NUP98-204ENST00000397004 USP31Q70CQ4 1352 aa16.99■□□□□ 0.31
NUP98-204ENST00000397004 TMEM2Q9UHN6 1383 aa16.98■□□□□ 0.31
NUP98-204ENST00000397004 USP6P35125 1406 aa16.98■□□□□ 0.31
NUP98-204ENST00000397004 SLIT1O75093 1534 aa16.98■□□□□ 0.31
NUP98-204ENST00000397004 GNAI2P04899 355 aa16.98■□□□□ 0.31
NUP98-204ENST00000397004 RILPL2Q969X0 211 aa16.98■□□□□ 0.31
NUP98-204ENST00000397004 IL17RAQ96F46 866 aa16.98■□□□□ 0.31
NUP98-204ENST00000397004 ANO2Q9NQ90 1003 aa16.98■□□□□ 0.31
NUP98-204ENST00000397004 RPAP1Q9BWH6 1393 aaPredicted RBP16.97■□□□□ 0.31
NUP98-204ENST00000397004 TRHP20396 242 aaPredicted RBP16.97■□□□□ 0.31
NUP98-204ENST00000397004 EYA1Q99502 592 aa16.97■□□□□ 0.31
NUP98-204ENST00000397004 LRRCC1Q9C099 1032 aa16.97■□□□□ 0.31
NUP98-204ENST00000397004 ESF1Q9H501 851 aaKnown RBP16.97■□□□□ 0.31
NUP98-204ENST00000397004 MAP4K4O95819 1239 aaPredicted RBP16.97■□□□□ 0.31
NUP98-204ENST00000397004 FLIIQ13045 1269 aa16.97■□□□□ 0.31
NUP98-204ENST00000397004 USP44Q9H0E7 712 aa16.97■□□□□ 0.31
NUP98-204ENST00000397004 DNAJC5Q9H3Z4 198 aa16.97■□□□□ 0.31
NUP98-204ENST00000397004 IL1RAPL2Q9NP60 686 aa16.97■□□□□ 0.31
NUP98-204ENST00000397004 LRRFIP2Q9Y608 721 aaKnown RBP16.97■□□□□ 0.31
NUP98-204ENST00000397004 ARHGAP23Q9P227 1491 aa16.97■□□□□ 0.31
NUP98-204ENST00000397004 ANP32BQ92688 251 aaKnown RBP16.97■□□□□ 0.31
NUP98-204ENST00000397004 CCT4P50991 539 aaKnown RBP16.96■□□□□ 0.31
NUP98-204ENST00000397004 ATP8B2P98198 1209 aa16.96■□□□□ 0.31
NUP98-204ENST00000397004 STAP2Q9UGK3 403 aa16.96■□□□□ 0.31
NUP98-204ENST00000397004 FAM208AQ9UK61 1670 aaKnown RBP16.96■□□□□ 0.31
NUP98-204ENST00000397004 ADAMTS13Q76LX8 1427 aa16.96■□□□□ 0.31
NUP98-204ENST00000397004 PDCL3Q9H2J4 239 aa16.96■□□□□ 0.31
NUP98-204ENST00000397004 KDRP35968 1356 aa16.96■□□□□ 0.3
NUP98-204ENST00000397004 ADAMTSL3P82987 1691 aa16.96■□□□□ 0.3
NUP98-204ENST00000397004 HMMRO75330 724 aa16.95■□□□□ 0.3
NUP98-204ENST00000397004 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.95■□□□□ 0.3
NUP98-204ENST00000397004 USP48Q86UV5 1035 aa16.95■□□□□ 0.3
NUP98-204ENST00000397004 SIRT1Q96EB6 747 aa16.95■□□□□ 0.3
NUP98-204ENST00000397004 NUTM1Q86Y26 1132 aa16.95■□□□□ 0.3
NUP98-204ENST00000397004 PLEKHG3A1L390 1219 aa16.94■□□□□ 0.3
NUP98-204ENST00000397004 TRIM6-TRIM34B2RNG4 842 aa16.94■□□□□ 0.3
NUP98-204ENST00000397004 COL9A3Q14050 684 aaPredicted RBP16.94■□□□□ 0.3
NUP98-204ENST00000397004 RASEFQ8IZ41 740 aa16.94■□□□□ 0.3
NUP98-204ENST00000397004 FMN2Q9NZ56 1722 aa16.93■□□□□ 0.3
NUP98-204ENST00000397004 INTS4Q96HW7 963 aaKnown RBP16.93■□□□□ 0.3
NUP98-204ENST00000397004 ZNF830Q96NB3 372 aaPredicted RBP16.93■□□□□ 0.3
NUP98-204ENST00000397004 IL17REQ8NFR9 667 aa16.93■□□□□ 0.3
NUP98-204ENST00000397004 PHAXQ9H814 394 aaKnown RBP16.93■□□□□ 0.3
NUP98-204ENST00000397004 ARHGEF10O15013 1369 aa16.93■□□□□ 0.3
NUP98-204ENST00000397004 ZBTB7CA1YPR0 619 aa16.93■□□□□ 0.3
NUP98-204ENST00000397004 CEBPAP49715 358 aaPredicted RBP16.93■□□□□ 0.3
NUP98-204ENST00000397004 FKBP5Q13451 457 aaPredicted RBP16.93■□□□□ 0.3
NUP98-204ENST00000397004 SRCIN1Q9C0H9 1055 aa16.93■□□□□ 0.3
NUP98-204ENST00000397004 LRRC37A3O60309 1634 aa16.93■□□□□ 0.3
NUP98-204ENST00000397004 PTPRUQ92729 1446 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 CPA1P15085 419 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 TERF1P54274 439 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 PI4K2BQ8TCG2 481 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.92■□□□□ 0.33e-6■■□□□ 12.8
NUP98-204ENST00000397004 HSPA4P34932 840 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 UQCRHLA0A096LP55 91 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 UQCRHP07919 91 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 LTKP29376 864 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 FAM13BQ9NYF5 915 aa16.92■□□□□ 0.3
NUP98-204ENST00000397004 PLEKHG5O94827 1062 aa16.91■□□□□ 0.3
NUP98-204ENST00000397004 C17orf53Q8N3J3 647 aaPredicted RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 170.6 ms