RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 PLEKHO1Q53GL0 409 aaPredicted RBP11.29□□□□□ -0.6
TDP1-202ENST00000393452 PLEKHM2Q8IWE5 1019 aa11.29□□□□□ -0.6
TDP1-202ENST00000393452 RGPD5Q99666 1765 aa11.29□□□□□ -0.6
TDP1-202ENST00000393452 TMEM94Q12767 1356 aa11.29□□□□□ -0.6
TDP1-202ENST00000393452 RBM25P49756 843 aaKnown RBP11.28□□□□□ -0.6
TDP1-202ENST00000393452 LGR6Q9HBX8 967 aa11.28□□□□□ -0.6
TDP1-202ENST00000393452 HSPA2P54652 639 aa11.28□□□□□ -0.6
TDP1-202ENST00000393452 SLC4A10Q6U841 1118 aa11.28□□□□□ -0.6
TDP1-202ENST00000393452 ANKRD24Q8TF21 1146 aa11.28□□□□□ -0.6
TDP1-202ENST00000393452 TBC1D2Q9BYX2 928 aa11.28□□□□□ -0.6
TDP1-202ENST00000393452 AXIN2Q9Y2T1 843 aa11.28□□□□□ -0.6
TDP1-202ENST00000393452 ADAMTS7Q9UKP4 1686 aa11.27□□□□□ -0.6
TDP1-202ENST00000393452 ZBTB7CA1YPR0 619 aa11.27□□□□□ -0.6
TDP1-202ENST00000393452 EIF4A1P60842 406 aaKnown RBP11.27□□□□□ -0.6
TDP1-202ENST00000393452 FKBP5Q13451 457 aaPredicted RBP11.27□□□□□ -0.6
TDP1-202ENST00000393452 NFKBIBQ15653 356 aa11.27□□□□□ -0.6
TDP1-202ENST00000393452 ZNF530Q6P9A1 599 aaPredicted RBP11.27□□□□□ -0.6
TDP1-202ENST00000393452 PXDNQ92626 1479 aa11.27□□□□□ -0.61
TDP1-202ENST00000393452 HMMRO75330 724 aa11.27□□□□□ -0.61
TDP1-202ENST00000393452 GSPT1P15170 499 aaKnown RBP11.26□□□□□ -0.61
TDP1-202ENST00000393452 ATF3P18847 181 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 HDGFL1Q5TGJ6 251 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 LMOD2Q6P5Q4 547 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 CHMP4AQ9BY43 222 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 ERBB3P21860 1342 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 SIPA1L3O60292 1781 aaPredicted RBP11.26□□□□□ -0.61
TDP1-202ENST00000393452 GNAI2P04899 355 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 GNAI3P08754 354 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 TBC1D9Q6ZT07 1266 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 ANTXR1Q9H6X2 564 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 COL18A1P39060 1754 aa11.26□□□□□ -0.61
TDP1-202ENST00000393452 CRYBG1Q9Y4K1 1723 aa11.25□□□□□ -0.61
TDP1-202ENST00000393452 RNMTO43148 476 aaKnown RBP11.25□□□□□ -0.61
TDP1-202ENST00000393452 NECTIN2Q92692 538 aa11.25□□□□□ -0.61
TDP1-202ENST00000393452 DEKP35659 375 aaKnown RBP11.25□□□□□ -0.61
TDP1-202ENST00000393452 TEFQ10587 303 aa11.25□□□□□ -0.61
TDP1-202ENST00000393452 TTC22Q5TAA0 569 aa11.25□□□□□ -0.61
TDP1-202ENST00000393452 HEG1Q9ULI3 1381 aa11.25□□□□□ -0.61
TDP1-202ENST00000393452 CDC45O75419 566 aa11.24□□□□□ -0.61
TDP1-202ENST00000393452 C1orf141Q5JVX7 400 aa11.24□□□□□ -0.61
TDP1-202ENST00000393452 MPRIPQ6WCQ1 1025 aa11.24□□□□□ -0.61
TDP1-202ENST00000393452 CADPS2Q86UW7 1296 aa11.24□□□□□ -0.61
TDP1-202ENST00000393452 ABCC6O95255 1503 aa11.24□□□□□ -0.61
TDP1-202ENST00000393452 BTBD11A6QL63 1104 aa11.24□□□□□ -0.61
TDP1-202ENST00000393452 C16orf71Q8IYS4 520 aaPredicted RBP11.24□□□□□ -0.61
TDP1-202ENST00000393452 KCNQ3O43525 872 aa11.23□□□□□ -0.61
TDP1-202ENST00000393452 ATP8B2P98198 1209 aa11.23□□□□□ -0.61
TDP1-202ENST00000393452 OTUD7AQ8TE49 926 aaPredicted RBP11.23□□□□□ -0.61
TDP1-202ENST00000393452 USP44Q9H0E7 712 aa11.23□□□□□ -0.61
TDP1-202ENST00000393452 PHAXQ9H814 394 aaKnown RBP11.23□□□□□ -0.61
TDP1-202ENST00000393452 NPHP3Q7Z494 1330 aa11.23□□□□□ -0.61
TDP1-202ENST00000393452 XIRP1Q702N8 1843 aaKnown RBP11.23□□□□□ -0.61
TDP1-202ENST00000393452 OSBPL3Q9H4L5 887 aa11.23□□□□□ -0.61
TDP1-202ENST00000393452 PLEKHG2Q9H7P9 1386 aa11.23□□□□□ -0.61
TDP1-202ENST00000393452 TNS3Q68CZ2 1445 aa11.22□□□□□ -0.61
TDP1-202ENST00000393452 EIF5BO60841 1220 aaKnown RBP11.22□□□□□ -0.61
TDP1-202ENST00000393452 SNX21Q969T3 373 aa11.22□□□□□ -0.61
TDP1-202ENST00000393452 KIF2CQ99661 725 aa11.22□□□□□ -0.61
TDP1-202ENST00000393452 SMARCA5O60264 1052 aaPredicted RBP11.21□□□□□ -0.61
TDP1-202ENST00000393452 PLEKHG5O94827 1062 aa11.21□□□□□ -0.61
TDP1-202ENST00000393452 ZC3H6P61129 1189 aaKnown RBP11.21□□□□□ -0.61
TDP1-202ENST00000393452 CHPF2Q9P2E5 772 aa11.21□□□□□ -0.61
TDP1-202ENST00000393452 SCN11AQ9UI33 1791 aa11.21□□□□□ -0.61
TDP1-202ENST00000393452 PNMA6EA0A0J9YXQ4 647 aa11.21□□□□□ -0.62
TDP1-202ENST00000393452 EIF2S2P20042 333 aaKnown RBP11.21□□□□□ -0.62
TDP1-202ENST00000393452 DDX17Q92841 729 aaKnown RBP11.21□□□□□ -0.62
TDP1-202ENST00000393452 TUBGCP6Q96RT7 1819 aa11.21□□□□□ -0.62
TDP1-202ENST00000393452 IBTKQ9P2D0 1353 aaPredicted RBP11.21□□□□□ -0.62
TDP1-202ENST00000393452 SALL3Q9BXA9 1300 aa11.2□□□□□ -0.62
TDP1-202ENST00000393452 GIGYF1O75420 1035 aaPredicted RBP11.2□□□□□ -0.62
TDP1-202ENST00000393452 SLKQ9H2G2 1235 aaPredicted RBP11.2□□□□□ -0.62
TDP1-202ENST00000393452 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.624e-6■■■□□ 19.2
TDP1-202ENST00000393452 LRRFIP2Q9Y608 721 aaKnown RBP11.2□□□□□ -0.62
TDP1-202ENST00000393452 SPATA31A3Q5VYP0 1347 aa11.2□□□□□ -0.62
TDP1-202ENST00000393452 FRAT2O75474 233 aaPredicted RBP11.2□□□□□ -0.62
TDP1-202ENST00000393452 UBTFL1P0CB47 393 aaPredicted RBP11.2□□□□□ -0.62
TDP1-202ENST00000393452 SRCIN1Q9C0H9 1055 aa11.2□□□□□ -0.62
TDP1-202ENST00000393452 DBF4Q9UBU7 674 aaPredicted RBP11.2□□□□□ -0.62
TDP1-202ENST00000393452 CPDO75976 1380 aa11.2□□□□□ -0.62
TDP1-202ENST00000393452 APBB1O00213 710 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 SDSP20132 328 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 BEND3Q5T5X7 828 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 SSH3Q8TE77 659 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 DNAAF4Q8WXU2 420 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 ADCY9O60503 1353 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 PDE1AP54750 535 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 RAPGEF4Q8WZA2 1011 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 LRRCC1Q9C099 1032 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 EXOC6BQ9Y2D4 811 aa11.19□□□□□ -0.62
TDP1-202ENST00000393452 PI4KAP2A4QPH2 592 aa11.18□□□□□ -0.62
TDP1-202ENST00000393452 HSCBQ8IWL3 235 aa11.18□□□□□ -0.62
TDP1-202ENST00000393452 PI4KAP1Q8N8J0 262 aa11.18□□□□□ -0.62
TDP1-202ENST00000393452 KDM6AO15550 1401 aaPredicted RBP11.18□□□□□ -0.62
TDP1-202ENST00000393452 MEGF6O75095 1541 aa11.18□□□□□ -0.62
TDP1-202ENST00000393452 STRCQ7RTU9 1775 aa11.18□□□□□ -0.62
TDP1-202ENST00000393452 POLA2Q14181 598 aa11.18□□□□□ -0.62
TDP1-202ENST00000393452 NLRP2Q9NX02 1062 aa11.18□□□□□ -0.62
TDP1-202ENST00000393452 PKD1L3Q7Z443 1732 aa11.17□□□□□ -0.62
TDP1-202ENST00000393452 TATP17735 454 aaPredicted RBP11.17□□□□□ -0.62
TDP1-202ENST00000393452 CABLES1Q8TDN4 633 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 246.3 ms