RNA–Protein interactions for RNA: ENST00000375360.7

PTPDC1-202, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,517 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-202ENST00000375360 ABCF2Q9UG63 623 aa21.52■■□□□ 1.04
PTPDC1-202ENST00000375360 TRMT112Q9UI30 125 aaKnown RBP21.52■■□□□ 1.04
PTPDC1-202ENST00000375360 PRPF40AO75400 957 aaKnown RBP21.52■■□□□ 1.04
PTPDC1-202ENST00000375360 NFATC2IPQ8NCF5 419 aa21.52■■□□□ 1.04
PTPDC1-202ENST00000375360 FIBPO43427 364 aa21.52■■□□□ 1.03
PTPDC1-202ENST00000375360 JAKMIP1Q96N16 626 aaKnown RBP21.52■■□□□ 1.03
PTPDC1-202ENST00000375360 EIF2AK4Q9P2K8 1649 aaKnown RBP21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 TRAK2O60296 914 aa21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 GLRX3O76003 335 aaKnown RBP21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 CEBPZQ03701 1054 aaKnown RBP21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 RNF214Q8ND24 703 aa21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 RSPH6AQ9H0K4 717 aa21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 K7ELQ4 463 aaPredicted RBP21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 ZCRB1Q8TBF4 217 aaKnown RBP21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 ARID3AQ99856 593 aa21.51■■□□□ 1.03
PTPDC1-202ENST00000375360 COPS6Q7L5N1 327 aa21.5■■□□□ 1.03
PTPDC1-202ENST00000375360 SNRPA1P09661 255 aaKnown RBP21.5■■□□□ 1.03
PTPDC1-202ENST00000375360 HOXC9P31274 260 aa21.5■■□□□ 1.03
PTPDC1-202ENST00000375360 MCM2P49736 904 aa21.5■■□□□ 1.03
PTPDC1-202ENST00000375360 SAFBQ15424 915 aaKnown RBP eCLIP21.5■■□□□ 1.03
PTPDC1-202ENST00000375360 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.5■■□□□ 1.03
PTPDC1-202ENST00000375360 GNL3LQ9NVN8 582 aaKnown RBP21.5■■□□□ 1.03
PTPDC1-202ENST00000375360 PIK3C2GO75747 1445 aa21.49■■□□□ 1.03
PTPDC1-202ENST00000375360 UBAP1LF5GYI3 381 aa21.49■■□□□ 1.03
PTPDC1-202ENST00000375360 BLOC1S2Q6QNY1 142 aa21.49■■□□□ 1.03
PTPDC1-202ENST00000375360 ANKRD13DQ6ZTN6 518 aa21.49■■□□□ 1.03
PTPDC1-202ENST00000375360 CAVIN1Q6NZI2 390 aaKnown RBP21.49■■□□□ 1.03
PTPDC1-202ENST00000375360 MRPL50Q8N5N7 158 aaKnown RBP21.49■■□□□ 1.03
PTPDC1-202ENST00000375360 XAGE3Q8WTP9 111 aa21.49■■□□□ 1.03
PTPDC1-202ENST00000375360 ACSBG1Q96GR2 724 aa21.48■■□□□ 1.03
PTPDC1-202ENST00000375360 NEO1Q92859 1461 aa21.48■■□□□ 1.03
PTPDC1-202ENST00000375360 TPD52L1Q16890 204 aaPredicted RBP21.48■■□□□ 1.03
PTPDC1-202ENST00000375360 IFIT5Q13325 482 aaKnown RBP21.47■■□□□ 1.03
PTPDC1-202ENST00000375360 RAB11FIP3O75154 756 aa21.47■■□□□ 1.03
PTPDC1-202ENST00000375360 IGHMBP2P38935 993 aaKnown RBP21.47■■□□□ 1.03
PTPDC1-202ENST00000375360 SART3Q15020 963 aaKnown RBP21.47■■□□□ 1.03
PTPDC1-202ENST00000375360 LRP2BPQ9P2M1 347 aa21.47■■□□□ 1.03
PTPDC1-202ENST00000375360 AKAP4Q5JQC9 854 aa21.47■■□□□ 1.03
PTPDC1-202ENST00000375360 TMEM2Q9UHN6 1383 aa21.46■■□□□ 1.03
PTPDC1-202ENST00000375360 IL13P35225 146 aa21.46■■□□□ 1.03
PTPDC1-202ENST00000375360 SAMD9LQ8IVG5 1584 aa21.46■■□□□ 1.03
PTPDC1-202ENST00000375360 CCDC73Q6ZRK6 1079 aa21.46■■□□□ 1.03
PTPDC1-202ENST00000375360 RAI14Q9P0K7 980 aa21.46■■□□□ 1.03
PTPDC1-202ENST00000375360 ARHGAP45Q92619 1136 aa21.45■■□□□ 1.02
PTPDC1-202ENST00000375360 PTPRTO14522 1441 aa21.45■■□□□ 1.02
PTPDC1-202ENST00000375360 SNRKQ9NRH2 765 aa21.45■■□□□ 1.02
PTPDC1-202ENST00000375360 PIK3R4Q99570 1358 aa21.45■■□□□ 1.02
PTPDC1-202ENST00000375360 PRPF40BQ6NWY9 871 aaKnown RBP21.45■■□□□ 1.02
PTPDC1-202ENST00000375360 IP6K1Q92551 441 aa21.45■■□□□ 1.02
PTPDC1-202ENST00000375360 LARP6Q9BRS8 491 aaKnown RBP21.45■■□□□ 1.02
PTPDC1-202ENST00000375360 SDF4Q9BRK5 362 aa21.44■■□□□ 1.02
PTPDC1-202ENST00000375360 TTC37Q6PGP7 1564 aa21.44■■□□□ 1.02
PTPDC1-202ENST00000375360 ZPR1O75312 459 aa21.44■■□□□ 1.02
PTPDC1-202ENST00000375360 IFIT1P09914 478 aaKnown RBP21.44■■□□□ 1.02
PTPDC1-202ENST00000375360 SPATA31E1Q6ZUB1 1445 aa21.44■■□□□ 1.02
PTPDC1-202ENST00000375360 UGGT1Q9NYU2 1555 aa21.43■■□□□ 1.02
PTPDC1-202ENST00000375360 C16orf71Q8IYS4 520 aaPredicted RBP21.43■■□□□ 1.02
PTPDC1-202ENST00000375360 CASTP20810 708 aaKnown RBP21.43■■□□□ 1.02
PTPDC1-202ENST00000375360 PDCP20941 246 aa21.43■■□□□ 1.02
PTPDC1-202ENST00000375360 PDRG1Q9NUG6 133 aa21.43■■□□□ 1.02
PTPDC1-202ENST00000375360 TBC1D9Q6ZT07 1266 aa21.42■■□□□ 1.02
PTPDC1-202ENST00000375360 NACAP1Q9BZK3 213 aa21.42■■□□□ 1.02
PTPDC1-202ENST00000375360 SF3B2Q13435 895 aaKnown RBP21.42■■□□□ 1.02
PTPDC1-202ENST00000375360 ARHGEF5Q12774 1597 aa21.42■■□□□ 1.02
PTPDC1-202ENST00000375360 LDHAL6AQ6ZMR3 332 aa21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 PHAXQ9H814 394 aaKnown RBP21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 ATP2B2Q01814 1243 aa21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 LARP1BQ659C4 914 aaKnown RBP21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 TRIM35Q9UPQ4 493 aa21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 TDO2P48775 406 aa21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 ZNF652Q9Y2D9 606 aa21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 IKQ13123 557 aaPredicted RBP21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 G2E3Q7L622 706 aa21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 C8orf37Q96NL8 207 aa21.41■■□□□ 1.02
PTPDC1-202ENST00000375360 SASS6Q6UVJ0 657 aa21.4■■□□□ 1.02
PTPDC1-202ENST00000375360 CWF19L2Q2TBE0 894 aaKnown RBP21.4■■□□□ 1.02
PTPDC1-202ENST00000375360 NUP133Q8WUM0 1156 aa21.4■■□□□ 1.02
PTPDC1-202ENST00000375360 CWC25Q9NXE8 425 aaPredicted RBP21.4■■□□□ 1.02
PTPDC1-202ENST00000375360 CTDP1Q9Y5B0 961 aaPredicted RBP21.4■■□□□ 1.02
PTPDC1-202ENST00000375360 TOM1O60784 492 aa21.4■■□□□ 1.02
PTPDC1-202ENST00000375360 ECHDC1Q9NTX5 307 aa21.4■■□□□ 1.02
PTPDC1-202ENST00000375360 NCBP3Q53F19 620 aaKnown RBP21.39■■□□□ 1.02
PTPDC1-202ENST00000375360 DDX11Q96FC9 970 aa21.39■■□□□ 1.02
PTPDC1-202ENST00000375360 LGR6Q9HBX8 967 aa21.39■■□□□ 1.02
PTPDC1-202ENST00000375360 MYO5CQ9NQX4 1742 aa21.39■■□□□ 1.01
PTPDC1-202ENST00000375360 CHD1O14646 1710 aa21.39■■□□□ 1.01
PTPDC1-202ENST00000375360 RHPN1Q8TCX5 695 aa21.39■■□□□ 1.01
PTPDC1-202ENST00000375360 HDAC1Q13547 482 aaPredicted RBP21.38■■□□□ 1.01
PTPDC1-202ENST00000375360 FERMT3Q86UX7 667 aa21.38■■□□□ 1.01
PTPDC1-202ENST00000375360 BMP2KLQ5H9B9 411 aa21.38■■□□□ 1.01
PTPDC1-202ENST00000375360 AIDAQ96BJ3 306 aa21.38■■□□□ 1.01
PTPDC1-202ENST00000375360 PA2G4Q9UQ80 394 aaKnown RBP21.38■■□□□ 1.01
PTPDC1-202ENST00000375360 METP08581 1390 aa21.38■■□□□ 1.01
PTPDC1-202ENST00000375360 NPC1L1Q9UHC9 1359 aa21.38■■□□□ 1.01
PTPDC1-202ENST00000375360 ANKRD44Q8N8A2 993 aa21.37■■□□□ 1.01
PTPDC1-202ENST00000375360 AKAP2Q9Y2D5 859 aa21.37■■□□□ 1.01
PTPDC1-202ENST00000375360 IL2RBP14784 551 aa21.37■■□□□ 1.01
PTPDC1-202ENST00000375360 ZSCAN25Q6NSZ9 544 aa21.37■■□□□ 1.01
PTPDC1-202ENST00000375360 TRPM2O94759 1503 aa21.37■■□□□ 1.01
PTPDC1-202ENST00000375360 TBC1D2Q9BYX2 928 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms