RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 MRC1P22897 1456 aa28.26■■■□□ 2.11
HOXA4-201ENST00000360046 BTBD11A6QL63 1104 aa28.26■■■□□ 2.11
HOXA4-201ENST00000360046 CT47B1P0C2W7 299 aaPredicted RBP28.26■■■□□ 2.11
HOXA4-201ENST00000360046 RBM6P78332 1123 aaKnown RBP28.24■■■□□ 2.11
HOXA4-201ENST00000360046 ILDR2Q71H61 639 aa28.24■■■□□ 2.11
HOXA4-201ENST00000360046 SEPT12Q8IYM1 358 aa28.24■■■□□ 2.11
HOXA4-201ENST00000360046 CABP4P57796 275 aa28.23■■■□□ 2.11
HOXA4-201ENST00000360046 ELL2O00472 640 aaPredicted RBP28.23■■■□□ 2.11
HOXA4-201ENST00000360046 ONECUT3O60422 494 aaPredicted RBP28.23■■■□□ 2.11
HOXA4-201ENST00000360046 MARCH10Q8NA82 808 aaPredicted RBP28.23■■■□□ 2.11
HOXA4-201ENST00000360046 C8orf58Q8NAV2 365 aa28.23■■■□□ 2.11
HOXA4-201ENST00000360046 NFATC2IPQ8NCF5 419 aa28.23■■■□□ 2.11
HOXA4-201ENST00000360046 TOGARAM1Q9Y4F4 1720 aa28.22■■■□□ 2.11
HOXA4-201ENST00000360046 TSPYL6Q8N831 410 aa28.22■■■□□ 2.11
HOXA4-201ENST00000360046 RGS17Q9UGC6 210 aaPredicted RBP28.22■■■□□ 2.11
HOXA4-201ENST00000360046 THSD7AQ9UPZ6 1657 aa28.22■■■□□ 2.11
HOXA4-201ENST00000360046 TWISTNBQ3B726 338 aaPredicted RBP28.21■■■□□ 2.11
HOXA4-201ENST00000360046 ERVV-2B6SEH9 535 aa28.21■■■□□ 2.11
HOXA4-201ENST00000360046 KRT24Q2M2I5 525 aa28.21■■■□□ 2.11
HOXA4-201ENST00000360046 RXRBP28702 533 aa28.2■■■□□ 2.1
HOXA4-201ENST00000360046 NEFLP07196 543 aa28.19■■■□□ 2.1
HOXA4-201ENST00000360046 RARSP54136 660 aaKnown RBP28.19■■■□□ 2.1
HOXA4-201ENST00000360046 VAMP4O75379 141 aa28.18■■■□□ 2.1
HOXA4-201ENST00000360046 BCAR3O75815 825 aa28.18■■■□□ 2.1
HOXA4-201ENST00000360046 KAT6BQ8WYB5 2073 aa28.17■■■□□ 2.1
HOXA4-201ENST00000360046 RRP1P56182 461 aaKnown RBP28.17■■■□□ 2.1
HOXA4-201ENST00000360046 BCL2L13Q9BXK5 485 aa28.17■■■□□ 2.1
HOXA4-201ENST00000360046 RNF123Q5XPI4 1314 aa28.17■■■□□ 2.1
HOXA4-201ENST00000360046 KCNQ3O43525 872 aa28.16■■■□□ 2.1
HOXA4-201ENST00000360046 POTEAQ6S8J7 498 aa28.16■■■□□ 2.1
HOXA4-201ENST00000360046 DOT1LQ8TEK3 1739 aa28.16■■■□□ 2.1
HOXA4-201ENST00000360046 ITGB4P16144 1822 aa28.15■■■□□ 2.1
HOXA4-201ENST00000360046 ZNF428Q96B54 188 aa28.15■■■□□ 2.1
HOXA4-201ENST00000360046 SYTL4Q96C24 671 aaPredicted RBP28.15■■■□□ 2.1
HOXA4-201ENST00000360046 EIF4A1P60842 406 aaKnown RBP28.14■■■□□ 2.1
HOXA4-201ENST00000360046 SLC39A6Q13433 755 aa28.14■■■□□ 2.1
HOXA4-201ENST00000360046 SMC4Q9NTJ3 1288 aa28.14■■■□□ 2.1
HOXA4-201ENST00000360046 TMOD3Q9NYL9 352 aa28.14■■■□□ 2.1
HOXA4-201ENST00000360046 FAM182BQ5T319 152 aa28.13■■■□□ 2.09
HOXA4-201ENST00000360046 ZNF790Q6PG37 636 aa28.13■■■□□ 2.09
HOXA4-201ENST00000360046 ACSBG1Q96GR2 724 aa28.13■■■□□ 2.09
HOXA4-201ENST00000360046 TTC5Q8N0Z6 440 aa28.12■■■□□ 2.09
HOXA4-201ENST00000360046 SSH1Q8WYL5 1049 aa28.12■■■□□ 2.09
HOXA4-201ENST00000360046 IRX6P78412 446 aaPredicted RBP28.12■■■□□ 2.09
HOXA4-201ENST00000360046 GTF3C3Q9Y5Q9 886 aa28.12■■■□□ 2.09
HOXA4-201ENST00000360046 PLIN1O60240 522 aa28.11■■■□□ 2.09
HOXA4-201ENST00000360046 ALDH1L2Q3SY69 923 aa28.11■■■□□ 2.09
HOXA4-201ENST00000360046 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.11■■■□□ 2.09
HOXA4-201ENST00000360046 PRIM1P49642 420 aaKnown RBP28.1■■■□□ 2.09
HOXA4-201ENST00000360046 CANXP27824 592 aaKnown RBP28.09■■■□□ 2.09
HOXA4-201ENST00000360046 KRT27Q7Z3Y8 459 aa28.09■■■□□ 2.09
HOXA4-201ENST00000360046 PAPPAQ13219 1627 aa28.09■■■□□ 2.09
HOXA4-201ENST00000360046 TCERG1O14776 1098 aaKnown RBP28.08■■■□□ 2.09
HOXA4-201ENST00000360046 FRAT1Q92837 279 aaPredicted RBP28.08■■■□□ 2.09
HOXA4-201ENST00000360046 SOS1Q07889 1333 aaPredicted RBP28.07■■■□□ 2.08
HOXA4-201ENST00000360046 PIGBQ92521 554 aa28.07■■■□□ 2.08
HOXA4-201ENST00000360046 FKBP8Q14318 412 aa28.06■■■□□ 2.08
HOXA4-201ENST00000360046 BCL9O00512 1426 aa28.05■■■□□ 2.08
HOXA4-201ENST00000360046 UBR2Q8IWV8 1755 aa28.05■■■□□ 2.08
HOXA4-201ENST00000360046 ZNF496Q96IT1 587 aaPredicted RBP28.04■■■□□ 2.08
HOXA4-201ENST00000360046 BRWD3Q6RI45 1802 aa28.04■■■□□ 2.08
HOXA4-201ENST00000360046 HOXB7P09629 217 aa28.04■■■□□ 2.08
HOXA4-201ENST00000360046 FMNL2Q96PY5 1086 aa28.04■■■□□ 2.08
HOXA4-201ENST00000360046 HEG1Q9ULI3 1381 aa28.03■■■□□ 2.08
HOXA4-201ENST00000360046 GIGYF1O75420 1035 aaPredicted RBP28.03■■■□□ 2.08
HOXA4-201ENST00000360046 NECTIN2Q92692 538 aa28.03■■■□□ 2.08
HOXA4-201ENST00000360046 KIF16BQ96L93 1317 aa28.02■■■□□ 2.08
HOXA4-201ENST00000360046 KCNQ2O43526 872 aa28.02■■■□□ 2.08
HOXA4-201ENST00000360046 HDGFL1Q5TGJ6 251 aa28.02■■■□□ 2.08
HOXA4-201ENST00000360046 MRPL50Q8N5N7 158 aaKnown RBP28.02■■■□□ 2.08
HOXA4-201ENST00000360046 C5P01031 1676 aa28.02■■■□□ 2.08
HOXA4-201ENST00000360046 RGS12O14924 1447 aa28.01■■■□□ 2.08
HOXA4-201ENST00000360046 CCDC30Q5VVM6 783 aa28.01■■■□□ 2.07
HOXA4-201ENST00000360046 KCPQ6ZWJ8 1503 aa28.01■■■□□ 2.07
HOXA4-201ENST00000360046 EIF2S2P20042 333 aaKnown RBP28.01■■■□□ 2.07
HOXA4-201ENST00000360046 STK31Q9BXU1 1019 aa28.01■■■□□ 2.07
HOXA4-201ENST00000360046 ASAP1Q9ULH1 1129 aa28■■■□□ 2.07
HOXA4-201ENST00000360046 PRAMEF22A3QJZ6 481 aa27.99■■■□□ 2.07
HOXA4-201ENST00000360046 NOB1Q9ULX3 412 aaKnown RBP27.99■■■□□ 2.07
HOXA4-201ENST00000360046 PTCD1O75127 700 aaKnown RBP27.98■■■□□ 2.07
HOXA4-201ENST00000360046 BRPF1P55201 1214 aaPredicted RBP27.98■■■□□ 2.07
HOXA4-201ENST00000360046 ZKSCAN2Q63HK3 967 aa27.98■■■□□ 2.07
HOXA4-201ENST00000360046 FAM196AQ6ZSG2 479 aa27.98■■■□□ 2.07
HOXA4-201ENST00000360046 CHMP4AQ9BY43 222 aa27.98■■■□□ 2.07
HOXA4-201ENST00000360046 ATG3Q9NT62 314 aa27.98■■■□□ 2.07
HOXA4-201ENST00000360046 SLC4A2P04920 1241 aa27.97■■■□□ 2.07
HOXA4-201ENST00000360046 SNRPA1P09661 255 aaKnown RBP27.97■■■□□ 2.07
HOXA4-201ENST00000360046 C20orf194Q5TEA3 1177 aa27.97■■■□□ 2.07
HOXA4-201ENST00000360046 IPO8O15397 1037 aaKnown RBP27.96■■■□□ 2.07
HOXA4-201ENST00000360046 CACNA1FO60840 1977 aa27.96■■■□□ 2.07
HOXA4-201ENST00000360046 LAMB4A4D0S4 1761 aa27.95■■■□□ 2.07
HOXA4-201ENST00000360046 RBM42Q9BTD8 480 aaKnown RBP27.95■■■□□ 2.06
HOXA4-201ENST00000360046 PTF1AQ7RTS3 328 aa27.94■■■□□ 2.06
HOXA4-201ENST00000360046 NHSQ6T4R5 1651 aa27.93■■■□□ 2.06
HOXA4-201ENST00000360046 ATF7IPQ6VMQ6 1270 aa27.92■■■□□ 2.06
HOXA4-201ENST00000360046 CLUAP1Q96AJ1 413 aa27.92■■■□□ 2.06
HOXA4-201ENST00000360046 TNNQ9UQP3 1299 aa27.92■■■□□ 2.06
HOXA4-201ENST00000360046 PDE3AQ14432 1141 aa27.92■■■□□ 2.06
HOXA4-201ENST00000360046 FTSJ3Q8IY81 847 aaKnown RBP27.92■■■□□ 2.06
HOXA4-201ENST00000360046 CHPF2Q9P2E5 772 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms