RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 TWISTNBQ3B726 338 aaPredicted RBP11.59□□□□□ -0.55
UPF2-202ENST00000357604 CHMP3Q9Y3E7 222 aa11.59□□□□□ -0.55
UPF2-202ENST00000357604 COL5A2P05997 1499 aaPredicted RBP11.59□□□□□ -0.55
UPF2-202ENST00000357604 ZBED9Q6R2W3 1325 aa11.59□□□□□ -0.55
UPF2-202ENST00000357604 AEBP1Q8IUX7 1158 aa11.59□□□□□ -0.55
UPF2-202ENST00000357604 NYXQ9GZU5 481 aa11.59□□□□□ -0.55
UPF2-202ENST00000357604 HMMRO75330 724 aa11.59□□□□□ -0.55
UPF2-202ENST00000357604 CFAP44Q96MT7 982 aa11.59□□□□□ -0.55
UPF2-202ENST00000357604 NRKQ7Z2Y5 1582 aa11.59□□□□□ -0.55
UPF2-202ENST00000357604 COL16A1Q07092 1604 aaPredicted RBP11.59□□□□□ -0.55
UPF2-202ENST00000357604 FKBP5Q13451 457 aaPredicted RBP11.58□□□□□ -0.55
UPF2-202ENST00000357604 STRCP1A6NGW2 1772 aa11.58□□□□□ -0.56
UPF2-202ENST00000357604 PHF14O94880 888 aa11.58□□□□□ -0.56
UPF2-202ENST00000357604 CCDC27Q2M243 656 aa11.58□□□□□ -0.56
UPF2-202ENST00000357604 C9orf78Q9NZ63 289 aaPredicted RBP11.58□□□□□ -0.56
UPF2-202ENST00000357604 SLC4A10Q6U841 1118 aa11.57□□□□□ -0.56
UPF2-202ENST00000357604 PPP1R42Q7Z4L9 355 aa11.57□□□□□ -0.56
UPF2-202ENST00000357604 AIMP1Q12904 312 aaKnown RBP11.57□□□□□ -0.56
UPF2-202ENST00000357604 ATRNO75882 1429 aa11.57□□□□□ -0.56
UPF2-202ENST00000357604 NFATC2IPQ8NCF5 419 aa11.56□□□□□ -0.56
UPF2-202ENST00000357604 CCDC87Q9NVE4 849 aa11.56□□□□□ -0.56
UPF2-202ENST00000357604 TNS2Q63HR2 1409 aa11.56□□□□□ -0.56
UPF2-202ENST00000357604 ZKSCAN2Q63HK3 967 aa11.56□□□□□ -0.56
UPF2-202ENST00000357604 FAM208AQ9UK61 1670 aaKnown RBP11.56□□□□□ -0.56
UPF2-202ENST00000357604 GNPATO15228 680 aa11.56□□□□□ -0.56
UPF2-202ENST00000357604 CD163L1Q9NR16 1453 aa11.56□□□□□ -0.56
UPF2-202ENST00000357604 DBF4Q9UBU7 674 aaPredicted RBP11.56□□□□□ -0.56
UPF2-202ENST00000357604 NECTIN2Q92692 538 aa11.56□□□□□ -0.56
UPF2-202ENST00000357604 MYL6BP14649 208 aa11.55□□□□□ -0.56
UPF2-202ENST00000357604 KCNJ4P48050 445 aa11.55□□□□□ -0.56
UPF2-202ENST00000357604 ITPRIPQ8IWB1 547 aa11.55□□□□□ -0.56
UPF2-202ENST00000357604 HOXB7P09629 217 aa11.55□□□□□ -0.56
UPF2-202ENST00000357604 WWC1Q8IX03 1113 aa11.55□□□□□ -0.56
UPF2-202ENST00000357604 AXIN2Q9Y2T1 843 aa11.55□□□□□ -0.56
UPF2-202ENST00000357604 RCAN3Q9UKA8 241 aa11.55□□□□□ -0.56
UPF2-202ENST00000357604 ANKRD26Q9UPS8 1709 aa11.54□□□□□ -0.56
UPF2-202ENST00000357604 ELL2O00472 640 aaPredicted RBP11.54□□□□□ -0.56
UPF2-202ENST00000357604 DUSP27Q5VZP5 1158 aa11.54□□□□□ -0.56
UPF2-202ENST00000357604 COL22A1Q8NFW1 1626 aaPredicted RBP11.54□□□□□ -0.56
UPF2-202ENST00000357604 GPATCH3Q96I76 525 aa11.54□□□□□ -0.56
UPF2-202ENST00000357604 SETDB2Q96T68 719 aa11.54□□□□□ -0.56
UPF2-202ENST00000357604 PHRF1Q9P1Y6 1649 aaKnown RBP11.53□□□□□ -0.56
UPF2-202ENST00000357604 CCT4P50991 539 aaKnown RBP11.53□□□□□ -0.56
UPF2-202ENST00000357604 RPGRQ92834 1020 aaKnown RBP11.53□□□□□ -0.56
UPF2-202ENST00000357604 PALLDQ8WX93 1383 aa11.53□□□□□ -0.56
UPF2-202ENST00000357604 ZNF790Q6PG37 636 aa11.53□□□□□ -0.56
UPF2-202ENST00000357604 ERBB4Q15303 1308 aa11.52□□□□□ -0.57
UPF2-202ENST00000357604 PIK3C2AO00443 1686 aa11.52□□□□□ -0.57
UPF2-202ENST00000357604 ALDH1L2Q3SY69 923 aa11.52□□□□□ -0.57
UPF2-202ENST00000357604 BICDL1Q6ZP65 573 aa11.52□□□□□ -0.57
UPF2-202ENST00000357604 SLIT2O94813 1529 aa11.52□□□□□ -0.57
UPF2-202ENST00000357604 VSIG10Q8N0Z9 540 aa11.52□□□□□ -0.57
UPF2-202ENST00000357604 GORABQ5T7V8 394 aa11.51□□□□□ -0.57
UPF2-202ENST00000357604 ADRA2BP18089 450 aa11.51□□□□□ -0.57
UPF2-202ENST00000357604 EXOSC9Q06265 439 aaKnown RBP11.51□□□□□ -0.57
UPF2-202ENST00000357604 DZIP3Q86Y13 1208 aaKnown RBP11.51□□□□□ -0.57
UPF2-202ENST00000357604 PDZRN3Q9UPQ7 1066 aa11.51□□□□□ -0.57
UPF2-202ENST00000357604 SENP3-EIF4A1A0A087X0R7 540 aa11.51□□□□□ -0.57
UPF2-202ENST00000357604 SLC4A2P04920 1241 aa11.51□□□□□ -0.57
UPF2-202ENST00000357604 BCL11AQ9H165 835 aa11.51□□□□□ -0.57
UPF2-202ENST00000357604 AAMPQ13685 434 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 LOC102724428A0A0B4J2F2 783 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 SIK1P57059 783 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 DCTN1Q14203 1278 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 CASC1Q6TDU7 716 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 GNAI3P08754 354 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 HSP90AB4PQ58FF6 505 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 NBPF5PQ86XG9 351 aaPredicted RBP11.5□□□□□ -0.57
UPF2-202ENST00000357604 MYOM1P52179 1685 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 PARP4Q9UKK3 1724 aaKnown RBP11.5□□□□□ -0.57
UPF2-202ENST00000357604 PARP10Q53GL7 1025 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 NLGN1Q8N2Q7 840 aa11.5□□□□□ -0.57
UPF2-202ENST00000357604 PTPRCP08575 1304 aa11.49□□□□□ -0.57
UPF2-202ENST00000357604 NFAT5O94916 1531 aa11.49□□□□□ -0.57
UPF2-202ENST00000357604 RGPD8O14715 1765 aaPredicted RBP11.49□□□□□ -0.57
UPF2-202ENST00000357604 SRCIN1Q9C0H9 1055 aa11.49□□□□□ -0.57
UPF2-202ENST00000357604 TRPM3Q9HCF6 1732 aaPredicted RBP11.49□□□□□ -0.57
UPF2-202ENST00000357604 ALS2Q96Q42 1657 aa11.48□□□□□ -0.57
UPF2-202ENST00000357604 SLC39A6Q13433 755 aa11.48□□□□□ -0.57
UPF2-202ENST00000357604 TPTE2Q6XPS3 522 aa11.48□□□□□ -0.57
UPF2-202ENST00000357604 MBIPQ9NS73 344 aa11.48□□□□□ -0.57
UPF2-202ENST00000357604 UTP14AQ9BVJ6 771 aaKnown RBP11.48□□□□□ -0.57
UPF2-202ENST00000357604 DDX19BQ9UMR2 479 aa11.48□□□□□ -0.57
UPF2-202ENST00000357604 UBTFL1P0CB47 393 aaPredicted RBP11.48□□□□□ -0.57
UPF2-202ENST00000357604 IGHMBP2P38935 993 aaKnown RBP11.48□□□□□ -0.57
UPF2-202ENST00000357604 RBM17Q96I25 401 aaKnown RBP11.48□□□□□ -0.57
UPF2-202ENST00000357604 MIS18AQ9NYP9 233 aa11.48□□□□□ -0.57
UPF2-202ENST00000357604 POTEAQ6S8J7 498 aa11.47□□□□□ -0.57
UPF2-202ENST00000357604 NWD2Q9ULI1 1742 aa11.47□□□□□ -0.57
UPF2-202ENST00000357604 FRAT2O75474 233 aaPredicted RBP11.47□□□□□ -0.57
UPF2-202ENST00000357604 EN1Q05925 392 aaPredicted RBP11.47□□□□□ -0.57
UPF2-202ENST00000357604 FAM177BA6PVY3 158 aa11.47□□□□□ -0.57
UPF2-202ENST00000357604 SSFA2P28290 1259 aa11.47□□□□□ -0.57
UPF2-202ENST00000357604 NKX1-1Q15270 411 aaPredicted RBP11.46□□□□□ -0.57
UPF2-202ENST00000357604 VPS37DQ86XT2 251 aa11.46□□□□□ -0.57
UPF2-202ENST00000357604 NOL10Q9BSC4 688 aaKnown RBP11.46□□□□□ -0.57
UPF2-202ENST00000357604 CWC25Q9NXE8 425 aaPredicted RBP11.46□□□□□ -0.57
UPF2-202ENST00000357604 FANCIQ9NVI1 1328 aa11.46□□□□□ -0.57
UPF2-202ENST00000357604 PDE6BP35913 854 aa11.46□□□□□ -0.57
UPF2-202ENST00000357604 TXNRD1Q16881 649 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms