RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CCNA1P78396 465 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 NRDCO43847 1150 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 XBP1P17861 261 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 CUL5Q93034 780 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 BRMS1Q9HCU9 246 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 IQGAP2Q13576 1575 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 SLC5A1P13866 664 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 NCBP1Q09161 790 aaKnown RBP10.17□□□□□ -0.78
HMGB1-203ENST00000341423 ERC1Q8IUD2 1116 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 ZMYND15Q9H091 742 aa10.17□□□□□ -0.78
HMGB1-203ENST00000341423 DAPK1P53355 1430 aa10.16□□□□□ -0.78
HMGB1-203ENST00000341423 SH2D4AQ9H788 454 aa10.16□□□□□ -0.78
HMGB1-203ENST00000341423 UBTFL1P0CB47 393 aaPredicted RBP10.16□□□□□ -0.78
HMGB1-203ENST00000341423 PNMA8AQ86V59 439 aaPredicted RBP10.16□□□□□ -0.78
HMGB1-203ENST00000341423 MKNK2Q9HBH9 465 aa10.16□□□□□ -0.78
HMGB1-203ENST00000341423 GNAT3A8MTJ3 354 aa10.16□□□□□ -0.78
HMGB1-203ENST00000341423 MPNDQ8N594 471 aa10.16□□□□□ -0.78
HMGB1-203ENST00000341423 DIAPH3Q9NSV4 1193 aa10.16□□□□□ -0.78
HMGB1-203ENST00000341423 TTC21AQ8NDW8 1320 aa10.16□□□□□ -0.78
HMGB1-203ENST00000341423 HFM1A2PYH4 1435 aa10.15□□□□□ -0.78
HMGB1-203ENST00000341423 GOLGA6L22H0YM25 854 aa10.15□□□□□ -0.78
HMGB1-203ENST00000341423 MATR3P43243 847 aaKnown RBP eCLIP10.15□□□□□ -0.78
HMGB1-203ENST00000341423 IREB2P48200 963 aaKnown RBP10.15□□□□□ -0.78
HMGB1-203ENST00000341423 CCDC96Q2M329 555 aa10.15□□□□□ -0.78
HMGB1-203ENST00000341423 RTKN2Q8IZC4 609 aa10.15□□□□□ -0.78
HMGB1-203ENST00000341423 ZBTB3Q9H5J0 574 aa10.15□□□□□ -0.78
HMGB1-203ENST00000341423 EFCAB5A4FU69 1503 aa10.15□□□□□ -0.78
HMGB1-203ENST00000341423 KANK4Q5T7N3 995 aaPredicted RBP10.15□□□□□ -0.78
HMGB1-203ENST00000341423 NOC3LQ8WTT2 800 aaKnown RBP10.15□□□□□ -0.78
HMGB1-203ENST00000341423 RUFY2Q8WXA3 655 aa10.15□□□□□ -0.78
HMGB1-203ENST00000341423 API5Q9BZZ5 524 aaKnown RBP10.15□□□□□ -0.78
HMGB1-203ENST00000341423 MTFR1LQ9H019 292 aa10.15□□□□□ -0.78
HMGB1-203ENST00000341423 KIF28PB7ZC32 967 aa10.15□□□□□ -0.79
HMGB1-203ENST00000341423 RRS1Q15050 365 aaKnown RBP10.15□□□□□ -0.79
HMGB1-203ENST00000341423 RALBP1Q15311 655 aa10.15□□□□□ -0.79
HMGB1-203ENST00000341423 CCDC136Q96JN2 1154 aa10.15□□□□□ -0.79
HMGB1-203ENST00000341423 ABCA10Q8WWZ4 1543 aa10.15□□□□□ -0.79
HMGB1-203ENST00000341423 FAM47CQ5HY64 1035 aa10.14□□□□□ -0.79
HMGB1-203ENST00000341423 DDX11Q96FC9 970 aa10.14□□□□□ -0.79
HMGB1-203ENST00000341423 VPS8Q8N3P4 1428 aa10.14□□□□□ -0.79
HMGB1-203ENST00000341423 TIMELESSQ9UNS1 1208 aa10.14□□□□□ -0.79
HMGB1-203ENST00000341423 CCDC141Q6ZP82 1450 aa10.14□□□□□ -0.79
HMGB1-203ENST00000341423 THRAP3Q9Y2W1 955 aaKnown RBP10.14□□□□□ -0.79
HMGB1-203ENST00000341423 DDX17Q92841 729 aaKnown RBP10.14□□□□□ -0.79
HMGB1-203ENST00000341423 COA7Q96BR5 231 aa10.14□□□□□ -0.79
HMGB1-203ENST00000341423 NEO1Q92859 1461 aa10.14□□□□□ -0.79
HMGB1-203ENST00000341423 GTPBP6O43824 516 aaPredicted RBP10.13□□□□□ -0.79
HMGB1-203ENST00000341423 HTATIP2Q9BUP3 242 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 GOLGA6L6A8MZA4 724 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 PTMAP06454 111 aaKnown RBP10.13□□□□□ -0.79
HMGB1-203ENST00000341423 RRP12Q5JTH9 1297 aaKnown RBP10.13□□□□□ -0.79
HMGB1-203ENST00000341423 MYD88Q99836 296 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 MAST3O60307 1309 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 M0QZ92 97 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 UQCRHP07919 91 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 SNRPA1P09661 255 aaKnown RBP10.13□□□□□ -0.79
HMGB1-203ENST00000341423 TTC16Q8NEE8 873 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 L3MBTL2Q969R5 705 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 ANKRD2Q9GZV1 360 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 PANK3Q9H999 370 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 HACL1Q9UJ83 578 aa10.13□□□□□ -0.79
HMGB1-203ENST00000341423 GGA1Q9UJY5 639 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 ZBBXA8MT70 800 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 SAFBQ15424 915 aaKnown RBP eCLIP10.12□□□□□ -0.79
HMGB1-203ENST00000341423 LARP1Q6PKG0 1096 aaKnown RBP10.12□□□□□ -0.79
HMGB1-203ENST00000341423 ZNF444Q8N0Y2 327 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-203ENST00000341423 CIZ1Q9ULV3 898 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-203ENST00000341423 ZFYVE16Q7Z3T8 1539 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 PLCH2O75038 1416 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 ERC2O15083 957 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 ZEB2O60315 1214 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 ZNF157P51786 506 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-203ENST00000341423 CCDC117Q8IWD4 279 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-203ENST00000341423 AS3MTQ9HBK9 375 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 PODXL2Q9NZ53 605 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 AKAP2Q9Y2D5 859 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 MMP10P09238 476 aa10.12□□□□□ -0.79
HMGB1-203ENST00000341423 SREBF2Q12772 1141 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 MICALL1Q8N3F8 863 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 SLC17A8Q8NDX2 589 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 KCNG4Q8TDN1 519 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 UFL1O94874 794 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 TXNRD1Q16881 649 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 GCC1Q96CN9 775 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 SLC27A3Q5K4L6 730 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 ARID3AQ99856 593 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 MKRN1Q9UHC7 482 aaKnown RBP10.11□□□□□ -0.79
HMGB1-203ENST00000341423 MAP2K1Q02750 393 aaPredicted RBP10.11□□□□□ -0.79
HMGB1-203ENST00000341423 ODF2Q5BJF6 829 aa10.11□□□□□ -0.79
HMGB1-203ENST00000341423 NEBLO76041 1014 aa10.1□□□□□ -0.79
HMGB1-203ENST00000341423 MBIPQ9NS73 344 aa10.1□□□□□ -0.79
HMGB1-203ENST00000341423 BICRAQ9NZM4 1560 aa10.1□□□□□ -0.79
HMGB1-203ENST00000341423 DESP17661 470 aa10.1□□□□□ -0.79
HMGB1-203ENST00000341423 PRDM5Q9NQX1 630 aaPredicted RBP10.1□□□□□ -0.79
HMGB1-203ENST00000341423 CIAPIN1Q6FI81 312 aa10.1□□□□□ -0.79
HMGB1-203ENST00000341423 TDO2P48775 406 aa10.1□□□□□ -0.79
HMGB1-203ENST00000341423 PARP10Q53GL7 1025 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 KRT18P05783 430 aaKnown RBP10.09□□□□□ -0.79
HMGB1-203ENST00000341423 APLP1P51693 650 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 GRIPAP1Q4V328 841 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms