RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 KIAA0754O94854 1291 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 NBPF7P0C2Y1 421 aaPredicted RBP4.86□□□□□ -1.63
NEDD4-201ENST00000338963 YY1P25490 414 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 HSP90AB2PQ58FF8 381 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 FAM200AQ8TCP9 573 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 SHTN1A0MZ66 631 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 PPFIA4O75335 1185 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 ARHGAP25P42331 645 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 LMAN1P49257 510 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 MYBPC2Q14324 1141 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 BRAPQ7Z569 592 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 DRC7Q8IY82 874 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 ZBTB9Q96C00 473 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 EZRP15311 586 aaKnown RBP4.86□□□□□ -1.63
NEDD4-201ENST00000338963 RNF168Q8IYW5 571 aaPredicted RBP4.86□□□□□ -1.63
NEDD4-201ENST00000338963 MIEF2Q96C03 454 aa4.86□□□□□ -1.63
NEDD4-201ENST00000338963 SLC8A1P32418 973 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 RCSD1Q6JBY9 416 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 RBM12BQ8IXT5 1001 aaKnown RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 CCDC26Q8TAB7 109 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 OSBPL9Q96SU4 736 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 LMBRD1Q9NUN5 540 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 SCAF11Q99590 1463 aaKnown RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 HFM1A2PYH4 1435 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 EIF3CLB5ME19 914 aaKnown RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 KANK4Q5T7N3 995 aaPredicted RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 SPTY2D1Q68D10 685 aaPredicted RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 MPNDQ8N594 471 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 ZCRB1Q8TBF4 217 aaKnown RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 EIF3CQ99613 913 aaKnown RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 SYCE3A1L190 88 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 SLC8A3P57103 927 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 CCDC170Q8IYT3 715 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 CABS1Q96KC9 395 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 GOLGA6L7A0A1B0GV03 622 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 U2SURPO15042 1029 aaKnown RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 PPFIA3O75145 1194 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 IMPDH2P12268 514 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 SSFA2P28290 1259 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 ZC3H12AQ5D1E8 599 aaKnown RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 SEPT14Q6ZU15 432 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 GOPCQ9HD26 462 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 TBC1D2BQ9UPU7 963 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 FYCO1Q9BQS8 1478 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 KDM4AO75164 1064 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 SASH1O94885 1247 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 PRR29P0C7W0 189 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 SDR16C5Q8N3Y7 309 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 CTCFLQ8NI51 663 aaPredicted RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 LZICQ8WZA0 190 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 CCDC192P0DO97 292 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 PSMD7P51665 324 aa4.85□□□□□ -1.63
NEDD4-201ENST00000338963 DYNC1I2Q13409 638 aaKnown RBP4.85□□□□□ -1.63
NEDD4-201ENST00000338963 CECR2Q9BXF3 1484 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 CLNS1AP54105 237 aaKnown RBP4.84□□□□□ -1.63
NEDD4-201ENST00000338963 GSDMDP57764 484 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 IFFO1Q0D2I5 559 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 TUBB2AQ13885 445 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 SAAL1Q96ER3 474 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 TUBB2BQ9BVA1 445 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 KDM4CQ9H3R0 1056 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 GJC2Q5T442 439 aaPredicted RBP4.84□□□□□ -1.63
NEDD4-201ENST00000338963 LUZP1Q86V48 1076 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 TAX1BP1Q86VP1 789 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 ZSCAN16Q9H4T2 348 aaPredicted RBP4.84□□□□□ -1.63
NEDD4-201ENST00000338963 STK26Q9P289 416 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 PDZRN3Q9UPQ7 1066 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 MCM3P25205 808 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 GCKP35557 465 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 NAP1L1P55209 391 aaKnown RBP4.84□□□□□ -1.63
NEDD4-201ENST00000338963 DDR1Q08345 913 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 BRD3Q15059 726 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 EP400NLQ6ZTU2 488 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 BAG1Q99933 345 aaPredicted RBP4.84□□□□□ -1.63
NEDD4-201ENST00000338963 ATG3Q9NT62 314 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 IL16Q14005 1332 aa4.84□□□□□ -1.63
NEDD4-201ENST00000338963 BLMP54132 1417 aaPredicted RBP4.84□□□□□ -1.63
NEDD4-201ENST00000338963 EBAG9O00559 213 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 KIF5CO60282 957 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 OAS2P29728 719 aaKnown RBP4.84□□□□□ -1.64
NEDD4-201ENST00000338963 SESN3P58005 492 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 KMT5BQ4FZB7 885 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 NEK11Q8NG66 645 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 RANBP17Q9H2T7 1088 aaKnown RBP4.84□□□□□ -1.64
NEDD4-201ENST00000338963 ARHGAP35Q9NRY4 1499 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 PLIN1O60240 522 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 PACS2Q86VP3 889 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 JAKMIP2Q96AA8 810 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 FRMD4BQ9Y2L6 1034 aa4.84□□□□□ -1.64
NEDD4-201ENST00000338963 PAX7P23759 505 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 PNMA6AP0CW24 399 aaPredicted RBP4.83□□□□□ -1.64
NEDD4-201ENST00000338963 MRPL12P52815 198 aaKnown RBP4.83□□□□□ -1.64
NEDD4-201ENST00000338963 SART3Q15020 963 aaKnown RBP4.83□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC57Q2TAC2 916 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC158Q5M9N0 1113 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 NBPF15Q8N660 670 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 CDC45O75419 566 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 CT47B1P0C2W7 299 aaPredicted RBP4.83□□□□□ -1.64
NEDD4-201ENST00000338963 CDC25BP30305 580 aa4.83□□□□□ -1.64
NEDD4-201ENST00000338963 LMNB2Q03252 620 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms