RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 PLEKHG2Q9H7P9 1386 aa17.96■□□□□ 0.47
VRK3-201ENST00000316763 GNAT3A8MTJ3 354 aa17.96■□□□□ 0.47
VRK3-201ENST00000316763 ATF7IPQ6VMQ6 1270 aa17.96■□□□□ 0.47
VRK3-201ENST00000316763 ZNF428Q96B54 188 aa17.96■□□□□ 0.47
VRK3-201ENST00000316763 QTRT2Q9H974 415 aaKnown RBP17.96■□□□□ 0.47
VRK3-201ENST00000316763 MAP3K5Q99683 1374 aa17.95■□□□□ 0.46
VRK3-201ENST00000316763 ALDH1L2Q3SY69 923 aa17.95■□□□□ 0.46
VRK3-201ENST00000316763 AMOTQ4VCS5 1084 aa17.95■□□□□ 0.46
VRK3-201ENST00000316763 RTF1Q92541 710 aaKnown RBP17.95■□□□□ 0.46
VRK3-201ENST00000316763 TRPC5Q9UL62 973 aaPredicted RBP17.95■□□□□ 0.46
VRK3-201ENST00000316763 MBIPQ9NS73 344 aa17.94■□□□□ 0.46
VRK3-201ENST00000316763 ATRNO75882 1429 aa17.94■□□□□ 0.46
VRK3-201ENST00000316763 CHL1O00533 1208 aa17.94■□□□□ 0.46
VRK3-201ENST00000316763 TRIM27P14373 513 aa17.94■□□□□ 0.46
VRK3-201ENST00000316763 PLEKHO1Q53GL0 409 aaPredicted RBP17.94■□□□□ 0.46
VRK3-201ENST00000316763 ZNF772Q68DY9 489 aaPredicted RBP17.94■□□□□ 0.46
VRK3-201ENST00000316763 RGS17Q9UGC6 210 aaPredicted RBP17.93■□□□□ 0.46
VRK3-201ENST00000316763 PDZRN3Q9UPQ7 1066 aa17.93■□□□□ 0.46
VRK3-201ENST00000316763 LAS1LQ9Y4W2 734 aaKnown RBP17.93■□□□□ 0.46
VRK3-201ENST00000316763 DEKP35659 375 aaKnown RBP17.92■□□□□ 0.46
VRK3-201ENST00000316763 GJD4Q96KN9 370 aaPredicted RBP17.92■□□□□ 0.46
VRK3-201ENST00000316763 NOB1Q9ULX3 412 aaKnown RBP17.92■□□□□ 0.46
VRK3-201ENST00000316763 ITPRIPQ8IWB1 547 aa17.92■□□□□ 0.46
VRK3-201ENST00000316763 RAPGEF4Q8WZA2 1011 aa17.92■□□□□ 0.46
VRK3-201ENST00000316763 THRAP3Q9Y2W1 955 aaKnown RBP17.92■□□□□ 0.46
VRK3-201ENST00000316763 LRRC37A3O60309 1634 aa17.91■□□□□ 0.46
VRK3-201ENST00000316763 IL17REQ8NFR9 667 aa17.91■□□□□ 0.46
VRK3-201ENST00000316763 MEGF6O75095 1541 aa17.9■□□□□ 0.46
VRK3-201ENST00000316763 GLI3P10071 1580 aa17.9■□□□□ 0.46
VRK3-201ENST00000316763 IL2RBP14784 551 aa17.9■□□□□ 0.46
VRK3-201ENST00000316763 AKAP4Q5JQC9 854 aa17.9■□□□□ 0.46
VRK3-201ENST00000316763 CEMIPQ8WUJ3 1361 aa17.9■□□□□ 0.46
VRK3-201ENST00000316763 WNK3Q9BYP7 1800 aa17.9■□□□□ 0.46
VRK3-201ENST00000316763 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.9■□□□□ 0.461e-7■■□□□ 12.1
VRK3-201ENST00000316763 TATP17735 454 aaPredicted RBP17.9■□□□□ 0.46
VRK3-201ENST00000316763 BRPF1P55201 1214 aaPredicted RBP17.9■□□□□ 0.46
VRK3-201ENST00000316763 HDAC1Q13547 482 aaPredicted RBP17.89■□□□□ 0.45
VRK3-201ENST00000316763 FAM98CQ17RN3 349 aaKnown RBP17.89■□□□□ 0.45
VRK3-201ENST00000316763 ZNF530Q6P9A1 599 aaPredicted RBP17.89■□□□□ 0.45
VRK3-201ENST00000316763 BARGINQ6ZT62 677 aa17.89■□□□□ 0.45
VRK3-201ENST00000316763 DISP2A7MBM2 1401 aa17.89■□□□□ 0.45
VRK3-201ENST00000316763 PARP4Q9UKK3 1724 aaKnown RBP17.88■□□□□ 0.45
VRK3-201ENST00000316763 CHMP4BQ9H444 224 aaKnown RBP17.88■□□□□ 0.45
VRK3-201ENST00000316763 UPF2Q9HAU5 1272 aaKnown RBP17.88■□□□□ 0.45
VRK3-201ENST00000316763 BABAM1Q9NWV8 329 aa17.87■□□□□ 0.45
VRK3-201ENST00000316763 VAMP4O75379 141 aa17.86■□□□□ 0.45
VRK3-201ENST00000316763 TMEM57Q8N5G2 664 aa17.86■□□□□ 0.45
VRK3-201ENST00000316763 OVOS2A0A0G2JMS6 1433 aa17.86■□□□□ 0.45
VRK3-201ENST00000316763 C1orf141Q5JVX7 400 aa17.86■□□□□ 0.45
VRK3-201ENST00000316763 POTEAQ6S8J7 498 aa17.86■□□□□ 0.45
VRK3-201ENST00000316763 TSPYL6Q8N831 410 aa17.86■□□□□ 0.45
VRK3-201ENST00000316763 C8orf58Q8NAV2 365 aa17.86■□□□□ 0.45
VRK3-201ENST00000316763 CDCA7Q9BWT1 371 aaPredicted RBP17.85■□□□□ 0.45
VRK3-201ENST00000316763 SPG7Q9UQ90 795 aa17.85■□□□□ 0.45
VRK3-201ENST00000316763 PKD1L3Q7Z443 1732 aa17.84■□□□□ 0.45
VRK3-201ENST00000316763 ONECUT3O60422 494 aaPredicted RBP17.84■□□□□ 0.45
VRK3-201ENST00000316763 RBM6P78332 1123 aaKnown RBP17.84■□□□□ 0.45
VRK3-201ENST00000316763 TAF7Q15545 349 aaPredicted RBP17.84■□□□□ 0.45
VRK3-201ENST00000316763 ZCRB1Q8TBF4 217 aaKnown RBP17.84■□□□□ 0.45
VRK3-201ENST00000316763 ARHGAP45Q92619 1136 aa17.84■□□□□ 0.45
VRK3-201ENST00000316763 LGR6Q9HBX8 967 aa17.84■□□□□ 0.45
VRK3-201ENST00000316763 ZBTB40Q9NUA8 1239 aa17.84■□□□□ 0.45
VRK3-201ENST00000316763 SLC4A3P48751 1232 aa17.84■□□□□ 0.45
VRK3-201ENST00000316763 TSPYL4Q9UJ04 414 aa17.84■□□□□ 0.45
VRK3-201ENST00000316763 RNMTO43148 476 aaKnown RBP17.83■□□□□ 0.44
VRK3-201ENST00000316763 TWISTNBQ3B726 338 aaPredicted RBP17.83■□□□□ 0.44
VRK3-201ENST00000316763 MIS18AQ9NYP9 233 aa17.83■□□□□ 0.44
VRK3-201ENST00000316763 SHANK3Q9BYB0 1731 aa17.82■□□□□ 0.44
VRK3-201ENST00000316763 EXOC5O00471 708 aa17.82■□□□□ 0.44
VRK3-201ENST00000316763 RXRBP28702 533 aa17.82■□□□□ 0.44
VRK3-201ENST00000316763 BECN1Q14457 450 aa17.82■□□□□ 0.44
VRK3-201ENST00000316763 MPRIPQ6WCQ1 1025 aa17.82■□□□□ 0.44
VRK3-201ENST00000316763 ADAMTS7Q9UKP4 1686 aa17.82■□□□□ 0.44
VRK3-201ENST00000316763 THSD7AQ9UPZ6 1657 aa17.82■□□□□ 0.44
VRK3-201ENST00000316763 A0A0G2JS52 829 aa17.82■□□□□ 0.44
VRK3-201ENST00000316763 PHKG2P15735 406 aa17.81■□□□□ 0.44
VRK3-201ENST00000316763 DDB1Q16531 1140 aa17.81■□□□□ 0.44
VRK3-201ENST00000316763 SMC5Q8IY18 1101 aa17.81■□□□□ 0.44
VRK3-201ENST00000316763 SEC24BO95487 1268 aa17.8■□□□□ 0.44
VRK3-201ENST00000316763 SEPT12Q8IYM1 358 aa17.8■□□□□ 0.44
VRK3-201ENST00000316763 MRPL50Q8N5N7 158 aaKnown RBP17.8■□□□□ 0.44
VRK3-201ENST00000316763 DDX54Q8TDD1 881 aaKnown RBP17.8■□□□□ 0.44
VRK3-201ENST00000316763 ELL2O00472 640 aaPredicted RBP17.8■□□□□ 0.44
VRK3-201ENST00000316763 CYP27B1O15528 508 aa17.8■□□□□ 0.44
VRK3-201ENST00000316763 KRT24Q2M2I5 525 aa17.8■□□□□ 0.44
VRK3-201ENST00000316763 IFNL2Q8IZJ0 200 aa17.8■□□□□ 0.44
VRK3-201ENST00000316763 TNS2Q63HR2 1409 aa17.78■□□□□ 0.44
VRK3-201ENST00000316763 PCDH11XQ9BZA7 1347 aa17.78■□□□□ 0.44
VRK3-201ENST00000316763 PCDH11YQ9BZA8 1340 aa17.78■□□□□ 0.44
VRK3-201ENST00000316763 KDM6AO15550 1401 aaPredicted RBP17.78■□□□□ 0.44
VRK3-201ENST00000316763 TEFQ10587 303 aa17.78■□□□□ 0.44
VRK3-201ENST00000316763 BRWD3Q6RI45 1802 aa17.77■□□□□ 0.44
VRK3-201ENST00000316763 SOS1Q07889 1333 aaPredicted RBP17.77■□□□□ 0.44
VRK3-201ENST00000316763 DCAF5Q96JK2 942 aa17.76■□□□□ 0.43
VRK3-201ENST00000316763 TBC1D32Q96NH3 1257 aa17.76■□□□□ 0.43
VRK3-201ENST00000316763 HSP90AB1P08238 724 aaKnown RBP17.76■□□□□ 0.43
VRK3-201ENST00000316763 MARCH10Q8NA82 808 aaPredicted RBP17.76■□□□□ 0.43
VRK3-201ENST00000316763 API5Q9BZZ5 524 aaKnown RBP17.76■□□□□ 0.43
VRK3-201ENST00000316763 NFKBIBQ15653 356 aa17.75■□□□□ 0.43
VRK3-201ENST00000316763 BTBD11A6QL63 1104 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms