RNA–Protein interactions for RNA: ENST00000308521.9

APOBEC3F-201, Transcript of apolipoprotein B mRNA editing enzyme catalytic subunit 3F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene APOBEC3F, Length 2,694 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOBEC3F-201ENST00000308521 HAP1P54257 671 aaPredicted RBP12.84□□□□□ -0.35
APOBEC3F-201ENST00000308521 TNS3Q68CZ2 1445 aa12.83□□□□□ -0.36
APOBEC3F-201ENST00000308521 SLIT3O75094 1523 aa12.83□□□□□ -0.36
APOBEC3F-201ENST00000308521 TRAK2O60296 914 aa12.83□□□□□ -0.36
APOBEC3F-201ENST00000308521 ATF7IPQ6VMQ6 1270 aa12.83□□□□□ -0.36
APOBEC3F-201ENST00000308521 MPRIPQ6WCQ1 1025 aa12.83□□□□□ -0.36
APOBEC3F-201ENST00000308521 KIAA0232Q92628 1395 aa12.83□□□□□ -0.36
APOBEC3F-201ENST00000308521 PXDNQ92626 1479 aa12.83□□□□□ -0.36
APOBEC3F-201ENST00000308521 CRB1P82279 1406 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 DDX11L8A8MPP1 907 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 MRE11P49959 708 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 PDE4CQ08493 712 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 ITPRIPQ8IWB1 547 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 SMC5Q8IY18 1101 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 NECTIN2Q92692 538 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 DDX19BQ9UMR2 479 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 ERBB3P21860 1342 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 TMEM57Q8N5G2 664 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 MRPL50Q8N5N7 158 aaKnown RBP12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 FOXD4L1Q9NU39 408 aa12.82□□□□□ -0.36
APOBEC3F-201ENST00000308521 ALS2Q96Q42 1657 aa12.81□□□□□ -0.36
APOBEC3F-201ENST00000308521 ZNF530Q6P9A1 599 aaPredicted RBP12.81□□□□□ -0.36
APOBEC3F-201ENST00000308521 SNX21Q969T3 373 aa12.81□□□□□ -0.36
APOBEC3F-201ENST00000308521 PRDM4Q9UKN5 801 aa12.81□□□□□ -0.36
APOBEC3F-201ENST00000308521 RGPD5Q99666 1765 aa12.81□□□□□ -0.36
APOBEC3F-201ENST00000308521 DDIT3P35638 169 aa12.81□□□□□ -0.36
APOBEC3F-201ENST00000308521 HSCBQ8IWL3 235 aa12.81□□□□□ -0.36
APOBEC3F-201ENST00000308521 MFAP1P55081 439 aaKnown RBP12.8□□□□□ -0.36
APOBEC3F-201ENST00000308521 ALDH1L2Q3SY69 923 aa12.8□□□□□ -0.36
APOBEC3F-201ENST00000308521 MAP7D2Q96T17 732 aa12.8□□□□□ -0.36
APOBEC3F-201ENST00000308521 MAP3K5Q99683 1374 aa12.8□□□□□ -0.36
APOBEC3F-201ENST00000308521 RBM25P49756 843 aaKnown RBP12.8□□□□□ -0.36
APOBEC3F-201ENST00000308521 PRDM11Q9NQV5 511 aa12.8□□□□□ -0.36
APOBEC3F-201ENST00000308521 SOS2Q07890 1332 aaPredicted RBP12.8□□□□□ -0.36
APOBEC3F-201ENST00000308521 PLEKHO1Q53GL0 409 aaPredicted RBP12.79□□□□□ -0.36
APOBEC3F-201ENST00000308521 CIZ1Q9ULV3 898 aaPredicted RBP12.79□□□□□ -0.36
APOBEC3F-201ENST00000308521 IPO8O15397 1037 aaKnown RBP12.78□□□□□ -0.36
APOBEC3F-201ENST00000308521 SPRYD3Q8NCJ5 442 aa12.78□□□□□ -0.36
APOBEC3F-201ENST00000308521 KCNQ3O43525 872 aa12.78□□□□□ -0.36
APOBEC3F-201ENST00000308521 KIF16BQ96L93 1317 aa12.78□□□□□ -0.36
APOBEC3F-201ENST00000308521 TAF7Q15545 349 aaPredicted RBP12.77□□□□□ -0.36
APOBEC3F-201ENST00000308521 PTMSP20962 102 aa12.77□□□□□ -0.37
APOBEC3F-201ENST00000308521 RAPGEF4Q8WZA2 1011 aa12.77□□□□□ -0.37
APOBEC3F-201ENST00000308521 STRN4Q9NRL3 753 aa12.77□□□□□ -0.37
APOBEC3F-201ENST00000308521 HTATSF1O43719 755 aaKnown RBP12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 SLC4A2P04920 1241 aa12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 C1orf141Q5JVX7 400 aa12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 PANK2Q9BZ23 570 aa12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 GZF1Q9H116 711 aaPredicted RBP12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 ZBTB40Q9NUA8 1239 aa12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 TERF1P54274 439 aa12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 NUCB1Q02818 461 aa12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 GRPEL1Q9HAV7 217 aa12.76□□□□□ -0.37
APOBEC3F-201ENST00000308521 AKAP4Q5JQC9 854 aa12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 G2E3Q7L622 706 aa12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 ZNF428Q96B54 188 aa12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 NCLP19338 710 aaKnown RBP12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 TEFQ10587 303 aa12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 C1orf115Q9H7X2 142 aa12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 PIP4K2BP78356 416 aa12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 SKOR2Q2VWA4 1001 aaPredicted RBP12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 TOM1L2Q6ZVM7 507 aa12.75□□□□□ -0.37
APOBEC3F-201ENST00000308521 AMOTQ4VCS5 1084 aa12.74□□□□□ -0.37
APOBEC3F-201ENST00000308521 EIF2S2P20042 333 aaKnown RBP12.74□□□□□ -0.37
APOBEC3F-201ENST00000308521 PHRF1Q9P1Y6 1649 aaKnown RBP12.73□□□□□ -0.37
APOBEC3F-201ENST00000308521 BTBD11A6QL63 1104 aa12.73□□□□□ -0.37
APOBEC3F-201ENST00000308521 RNMTO43148 476 aaKnown RBP12.73□□□□□ -0.37
APOBEC3F-201ENST00000308521 TATP17735 454 aaPredicted RBP12.73□□□□□ -0.37
APOBEC3F-201ENST00000308521 BRPF1P55201 1214 aaPredicted RBP12.73□□□□□ -0.37
APOBEC3F-201ENST00000308521 A0A0U1RQG5 324 aaPredicted RBP12.73□□□□□ -0.37
APOBEC3F-201ENST00000308521 F6X3S4 739 aa12.73□□□□□ -0.37
APOBEC3F-201ENST00000308521 GBP4Q96PP9 640 aa12.73□□□□□ -0.37
APOBEC3F-201ENST00000308521 RAB3GAP1Q15042 981 aa12.72□□□□□ -0.37
APOBEC3F-201ENST00000308521 BMP2KLQ5H9B9 411 aa12.72□□□□□ -0.37
APOBEC3F-201ENST00000308521 EVA1CP58658 441 aa12.72□□□□□ -0.37
APOBEC3F-201ENST00000308521 LARP1Q6PKG0 1096 aaKnown RBP12.72□□□□□ -0.37
APOBEC3F-201ENST00000308521 SMAP1Q8IYB5 467 aaPredicted RBP12.72□□□□□ -0.37
APOBEC3F-201ENST00000308521 TNPO1Q92973 898 aaKnown RBP12.72□□□□□ -0.37
APOBEC3F-201ENST00000308521 CEMIPQ8WUJ3 1361 aa12.72□□□□□ -0.37
APOBEC3F-201ENST00000308521 MEGF6O75095 1541 aa12.71□□□□□ -0.37
APOBEC3F-201ENST00000308521 SLC39A6Q13433 755 aa12.71□□□□□ -0.37
APOBEC3F-201ENST00000308521 SLC4A10Q6U841 1118 aa12.71□□□□□ -0.37
APOBEC3F-201ENST00000308521 CHD1LQ86WJ1 897 aa12.71□□□□□ -0.37
APOBEC3F-201ENST00000308521 ARXQ96QS3 562 aa12.71□□□□□ -0.37
APOBEC3F-201ENST00000308521 COL18A1P39060 1754 aa12.71□□□□□ -0.37
APOBEC3F-201ENST00000308521 PRAMEF22A3QJZ6 481 aa12.71□□□□□ -0.38
APOBEC3F-201ENST00000308521 ANXA1P04083 346 aa12.71□□□□□ -0.38
APOBEC3F-201ENST00000308521 PDIA4P13667 645 aaKnown RBP12.71□□□□□ -0.38
APOBEC3F-201ENST00000308521 MTERF4Q7Z6M4 381 aaKnown RBP12.71□□□□□ -0.38
APOBEC3F-201ENST00000308521 ARHGAP45Q92619 1136 aa12.71□□□□□ -0.38
APOBEC3F-201ENST00000308521 CHMP4BQ9H444 224 aaKnown RBP12.71□□□□□ -0.38
APOBEC3F-201ENST00000308521 CPDO75976 1380 aa12.71□□□□□ -0.38
APOBEC3F-201ENST00000308521 CAMTA1Q9Y6Y1 1673 aa12.71□□□□□ -0.38
APOBEC3F-201ENST00000308521 ESPNB1AK53 854 aa12.7□□□□□ -0.38
APOBEC3F-201ENST00000308521 ZBTB7BO15156 539 aaPredicted RBP12.7□□□□□ -0.38
APOBEC3F-201ENST00000308521 HOXD11P31277 338 aaPredicted RBP12.7□□□□□ -0.38
APOBEC3F-201ENST00000308521 CYP27B1O15528 508 aa12.7□□□□□ -0.38
APOBEC3F-201ENST00000308521 EIF4A1P60842 406 aaKnown RBP12.7□□□□□ -0.38
APOBEC3F-201ENST00000308521 NFATC2IPQ8NCF5 419 aa12.7□□□□□ -0.38
APOBEC3F-201ENST00000308521 HSP90AB1P08238 724 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms