RNA–Protein interactions for RNA: ENST00000302190.8

SDC2-201, Transcript of syndecan 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC2, Length 3,759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-201ENST00000302190 PDE4CQ08493 712 aa17.04■□□□□ 0.32
SDC2-201ENST00000302190 ZGPATQ8N5A5 531 aaKnown RBP17.04■□□□□ 0.32
SDC2-201ENST00000302190 CD163L1Q9NR16 1453 aa17.03■□□□□ 0.32
SDC2-201ENST00000302190 BAG4O95429 457 aaKnown RBP17.03■□□□□ 0.32
SDC2-201ENST00000302190 LRRCC1Q9C099 1032 aa17.03■□□□□ 0.32
SDC2-201ENST00000302190 ZBTB7BO15156 539 aaPredicted RBP17.02■□□□□ 0.32
SDC2-201ENST00000302190 PSME1Q06323 249 aa17.02■□□□□ 0.32
SDC2-201ENST00000302190 RGPD8O14715 1765 aaPredicted RBP17.02■□□□□ 0.31
SDC2-201ENST00000302190 SIL1Q9H173 461 aa17.02■□□□□ 0.31
SDC2-201ENST00000302190 IFIT2P09913 472 aaKnown RBP17.01■□□□□ 0.31
SDC2-201ENST00000302190 CWC27Q6UX04 472 aaKnown RBP17.01■□□□□ 0.31
SDC2-201ENST00000302190 SMC3Q9UQE7 1217 aa17.01■□□□□ 0.31
SDC2-201ENST00000302190 INSRP06213 1382 aa17.01■□□□□ 0.31
SDC2-201ENST00000302190 SRGAP3O43295 1099 aa17.01■□□□□ 0.31
SDC2-201ENST00000302190 NPC1L1Q9UHC9 1359 aa17■□□□□ 0.31
SDC2-201ENST00000302190 CD2BP2O95400 341 aaKnown RBP17■□□□□ 0.31
SDC2-201ENST00000302190 RPAP2Q8IXW5 612 aaPredicted RBP17■□□□□ 0.31
SDC2-201ENST00000302190 MED14O60244 1454 aa17■□□□□ 0.31
SDC2-201ENST00000302190 CIZ1Q9ULV3 898 aaPredicted RBP17■□□□□ 0.31
SDC2-201ENST00000302190 CCDC30Q5VVM6 783 aa16.99■□□□□ 0.31
SDC2-201ENST00000302190 GNAI3P08754 354 aa16.99■□□□□ 0.31
SDC2-201ENST00000302190 LRRFIP2Q9Y608 721 aaKnown RBP16.99■□□□□ 0.31
SDC2-201ENST00000302190 CABLES1Q8TDN4 633 aa16.98■□□□□ 0.31
SDC2-201ENST00000302190 PDCL3Q9H2J4 239 aa16.98■□□□□ 0.31
SDC2-201ENST00000302190 TTC22Q5TAA0 569 aa16.98■□□□□ 0.31
SDC2-201ENST00000302190 PHF8Q9UPP1 1060 aa16.98■□□□□ 0.31
SDC2-201ENST00000302190 CPS1P31327 1500 aa16.98■□□□□ 0.31
SDC2-201ENST00000302190 TTC21BQ7Z4L5 1316 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 CHAF1AQ13111 956 aaPredicted RBP16.97■□□□□ 0.31
SDC2-201ENST00000302190 G2E3Q7L622 706 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 FERMT3Q86UX7 667 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 TMEM94Q12767 1356 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 ATP7BP35670 1465 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 STK3Q13188 491 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 PLEKHM2Q8IWE5 1019 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 GPATCH3Q96I76 525 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 FAM135BQ49AJ0 1406 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 C1orf141Q5JVX7 400 aa16.97■□□□□ 0.31
SDC2-201ENST00000302190 ATF3P18847 181 aa16.96■□□□□ 0.31
SDC2-201ENST00000302190 CCDC173Q0VFZ6 552 aa16.96■□□□□ 0.31
SDC2-201ENST00000302190 SPC24Q8NBT2 197 aa16.96■□□□□ 0.31
SDC2-201ENST00000302190 SPG7Q9UQ90 795 aa16.96■□□□□ 0.31
SDC2-201ENST00000302190 MX1P20591 662 aa16.96■□□□□ 0.3
SDC2-201ENST00000302190 CEBPZQ03701 1054 aaKnown RBP16.96■□□□□ 0.3
SDC2-201ENST00000302190 PKP1Q13835 747 aa16.96■□□□□ 0.3
SDC2-201ENST00000302190 ZNF692Q9BU19 519 aaPredicted RBP16.96■□□□□ 0.3
SDC2-201ENST00000302190 IL16Q14005 1332 aa16.95■□□□□ 0.3
SDC2-201ENST00000302190 CCT4P50991 539 aaKnown RBP16.95■□□□□ 0.3
SDC2-201ENST00000302190 EIF4A2Q14240 407 aaKnown RBP16.95■□□□□ 0.3
SDC2-201ENST00000302190 ZKSCAN1P17029 563 aaPredicted RBP16.94■□□□□ 0.3
SDC2-201ENST00000302190 ANTXR1Q9H6X2 564 aa16.94■□□□□ 0.3
SDC2-201ENST00000302190 KDM4AO75164 1064 aa16.94■□□□□ 0.3
SDC2-201ENST00000302190 PHF14O94880 888 aa16.94■□□□□ 0.3
SDC2-201ENST00000302190 TECPR2O15040 1411 aa16.94■□□□□ 0.3
SDC2-201ENST00000302190 PPFIA3O75145 1194 aa16.94■□□□□ 0.3
SDC2-201ENST00000302190 TPM2P07951 284 aa16.94■□□□□ 0.3
SDC2-201ENST00000302190 CLASRPQ8N2M8 674 aaKnown RBP16.94■□□□□ 0.3
SDC2-201ENST00000302190 GAS2L3Q86XJ1 694 aa16.93■□□□□ 0.3
SDC2-201ENST00000302190 NSD2O96028 1365 aa16.93■□□□□ 0.3
SDC2-201ENST00000302190 FLIIQ13045 1269 aa16.93■□□□□ 0.3
SDC2-201ENST00000302190 PLEKHF1Q96S99 279 aa16.92■□□□□ 0.3
SDC2-201ENST00000302190 SRCIN1Q9C0H9 1055 aa16.92■□□□□ 0.3
SDC2-201ENST00000302190 DLC1Q96QB1 1528 aa16.92■□□□□ 0.3
SDC2-201ENST00000302190 G3BP1Q13283 466 aaKnown RBP eCLIP16.92■□□□□ 0.3
SDC2-201ENST00000302190 ZNF592Q92610 1267 aa16.92■□□□□ 0.3
SDC2-201ENST00000302190 H3BQV1 296 aa16.92■□□□□ 0.3
SDC2-201ENST00000302190 ZC3H6P61129 1189 aaKnown RBP16.92■□□□□ 0.3
SDC2-201ENST00000302190 RAB3GAP1Q15042 981 aa16.92■□□□□ 0.3
SDC2-201ENST00000302190 GORABQ5T7V8 394 aa16.92■□□□□ 0.3
SDC2-201ENST00000302190 IFFO2Q5TF58 517 aa16.92■□□□□ 0.3
SDC2-201ENST00000302190 TAF7Q15545 349 aaPredicted RBP16.91■□□□□ 0.3
SDC2-201ENST00000302190 BICD2Q8TD16 824 aa16.91■□□□□ 0.3
SDC2-201ENST00000302190 MYL6BP14649 208 aa16.91■□□□□ 0.3
SDC2-201ENST00000302190 CEP85Q6P2H3 762 aa16.91■□□□□ 0.3
SDC2-201ENST00000302190 SIRT1Q96EB6 747 aa16.91■□□□□ 0.3
SDC2-201ENST00000302190 PRIM1P49642 420 aaKnown RBP16.91■□□□□ 0.3
SDC2-201ENST00000302190 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.91■□□□□ 0.3
SDC2-201ENST00000302190 ANKRD44Q8N8A2 993 aa16.91■□□□□ 0.3
SDC2-201ENST00000302190 TCEANC2Q96MN5 208 aa16.91■□□□□ 0.3
SDC2-201ENST00000302190 RIC3Q7Z5B4 369 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 ZSCAN30Q86W11 494 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 JARID2Q92833 1246 aaPredicted RBP16.9■□□□□ 0.3
SDC2-201ENST00000302190 CWC22Q9HCG8 908 aaKnown RBP16.9■□□□□ 0.3
SDC2-201ENST00000302190 DIP2AQ14689 1571 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 LMTK3Q96Q04 1460 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 GSPT1P15170 499 aaKnown RBP16.9■□□□□ 0.3
SDC2-201ENST00000302190 PDE1AP54750 535 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 ZSCAN23Q3MJ62 389 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 TMX3Q96JJ7 454 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 FSD1Q9BTV5 496 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 TSPY26PQ9H489 355 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 CNTROBQ8N137 903 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 ZNF830Q96NB3 372 aaPredicted RBP16.9■□□□□ 0.3
SDC2-201ENST00000302190 DCTPP1Q9H773 170 aa16.9■□□□□ 0.3
SDC2-201ENST00000302190 CCDC83Q8IWF9 413 aa16.89■□□□□ 0.3
SDC2-201ENST00000302190 C19orf44Q9H6X5 657 aa16.89■□□□□ 0.3
SDC2-201ENST00000302190 ZNF530Q6P9A1 599 aaPredicted RBP16.89■□□□□ 0.29
SDC2-201ENST00000302190 MPRIPQ6WCQ1 1025 aa16.89■□□□□ 0.29
SDC2-201ENST00000302190 FAM184AQ8NB25 1140 aa16.89■□□□□ 0.29
SDC2-201ENST00000302190 RUFY2Q8WXA3 655 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms