RNA–Protein interactions for RNA: ENST00000299705.9

TMED3-201, Transcript of transmembrane p24 trafficking protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMED3, Length 1,475 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED3-201ENST00000299705 BCL11BQ9C0K0 894 aaPredicted RBP23.55■■□□□ 1.36
TMED3-201ENST00000299705 IL16Q14005 1332 aa23.54■■□□□ 1.36
TMED3-201ENST00000299705 KCNQ2O43526 872 aa23.54■■□□□ 1.36
TMED3-201ENST00000299705 SYTL4Q96C24 671 aaPredicted RBP23.54■■□□□ 1.36
TMED3-201ENST00000299705 PIGBQ92521 554 aa23.53■■□□□ 1.36
TMED3-201ENST00000299705 BABAM1Q9NWV8 329 aa23.53■■□□□ 1.36
TMED3-201ENST00000299705 ZBED9Q6R2W3 1325 aa23.51■■□□□ 1.35
TMED3-201ENST00000299705 KAT6BQ8WYB5 2073 aa23.51■■□□□ 1.35
TMED3-201ENST00000299705 TRIM37O94972 964 aa23.5■■□□□ 1.35
TMED3-201ENST00000299705 CFAP44Q96MT7 982 aa23.5■■□□□ 1.35
TMED3-201ENST00000299705 IFT57Q9NWB7 429 aa23.5■■□□□ 1.35
TMED3-201ENST00000299705 BTBD11A6QL63 1104 aa23.49■■□□□ 1.35
TMED3-201ENST00000299705 ZNF853P0CG23 659 aa23.49■■□□□ 1.35
TMED3-201ENST00000299705 CHL1O00533 1208 aa23.49■■□□□ 1.35
TMED3-201ENST00000299705 GNAI1P63096 354 aa23.49■■□□□ 1.35
TMED3-201ENST00000299705 GOLGA2Q08379 1002 aa23.48■■□□□ 1.35
TMED3-201ENST00000299705 PTF1AQ7RTS3 328 aa23.48■■□□□ 1.35
TMED3-201ENST00000299705 BTAF1O14981 1849 aa23.47■■□□□ 1.35
TMED3-201ENST00000299705 PAPPAQ13219 1627 aa23.47■■□□□ 1.35
TMED3-201ENST00000299705 EP400Q96L91 3159 aa23.46■■□□□ 1.35
TMED3-201ENST00000299705 ZNF790Q6PG37 636 aa23.45■■□□□ 1.34
TMED3-201ENST00000299705 SMARCC1Q92922 1105 aaPredicted RBP23.45■■□□□ 1.34
TMED3-201ENST00000299705 ATG3Q9NT62 314 aa23.45■■□□□ 1.34
TMED3-201ENST00000299705 TSPYL4Q9UJ04 414 aa23.45■■□□□ 1.34
TMED3-201ENST00000299705 LAS1LQ9Y4W2 734 aaKnown RBP23.45■■□□□ 1.34
TMED3-201ENST00000299705 KDM3BQ7LBC6 1761 aa23.45■■□□□ 1.34
TMED3-201ENST00000299705 MIS18AQ9NYP9 233 aa23.44■■□□□ 1.34
TMED3-201ENST00000299705 ASAP1Q9ULH1 1129 aa23.44■■□□□ 1.34
TMED3-201ENST00000299705 TNS1Q9HBL0 1735 aaKnown RBP23.44■■□□□ 1.34
TMED3-201ENST00000299705 CCDC125Q86Z20 511 aa23.43■■□□□ 1.34
TMED3-201ENST00000299705 YTHDC1Q96MU7 727 aaKnown RBP23.43■■□□□ 1.34
TMED3-201ENST00000299705 E9PSI1 815 aa23.43■■□□□ 1.34
TMED3-201ENST00000299705 SLC39A6Q13433 755 aa23.43■■□□□ 1.34
TMED3-201ENST00000299705 TTC5Q8N0Z6 440 aa23.43■■□□□ 1.34
TMED3-201ENST00000299705 SPINK5Q9NQ38 1064 aaPredicted RBP23.43■■□□□ 1.34
TMED3-201ENST00000299705 MBIPQ9NS73 344 aa23.43■■□□□ 1.34
TMED3-201ENST00000299705 SLFN5Q08AF3 891 aa23.42■■□□□ 1.34
TMED3-201ENST00000299705 UPF1Q92900 1129 aaKnown RBP eCLIP23.42■■□□□ 1.343e-8■■■■■ 35
TMED3-201ENST00000299705 MYH16Q9H6N6 1097 aa23.42■■□□□ 1.34
TMED3-201ENST00000299705 UBR2Q8IWV8 1755 aa23.41■■□□□ 1.34
TMED3-201ENST00000299705 PALLDQ8WX93 1383 aa23.41■■□□□ 1.34
TMED3-201ENST00000299705 PLSCR1O15162 318 aa23.4■■□□□ 1.34
TMED3-201ENST00000299705 KCNQ3O43525 872 aa23.4■■□□□ 1.34
TMED3-201ENST00000299705 KCPQ6ZWJ8 1503 aa23.39■■□□□ 1.34
TMED3-201ENST00000299705 APBA3O96018 575 aa23.39■■□□□ 1.34
TMED3-201ENST00000299705 EIF4A1P60842 406 aaKnown RBP23.39■■□□□ 1.34
TMED3-201ENST00000299705 TRMT2AQ8IZ69 625 aaKnown RBP23.39■■□□□ 1.34
TMED3-201ENST00000299705 CDCA7LQ96GN5 454 aa23.39■■□□□ 1.34
TMED3-201ENST00000299705 SF3B2Q13435 895 aaKnown RBP23.38■■□□□ 1.33
TMED3-201ENST00000299705 FMNL2Q96PY5 1086 aa23.38■■□□□ 1.33
TMED3-201ENST00000299705 FANCIQ9NVI1 1328 aa23.38■■□□□ 1.33
TMED3-201ENST00000299705 TSR2Q969E8 191 aaKnown RBP23.37■■□□□ 1.33
TMED3-201ENST00000299705 ZNF496Q96IT1 587 aaPredicted RBP23.37■■□□□ 1.33
TMED3-201ENST00000299705 LY75O60449 1722 aa23.37■■□□□ 1.33
TMED3-201ENST00000299705 RGPD3A6NKT7 1758 aaPredicted RBP23.36■■□□□ 1.33
TMED3-201ENST00000299705 RGPD4Q7Z3J3 1758 aa23.36■■□□□ 1.33
TMED3-201ENST00000299705 VSIG10Q8N0Z9 540 aa23.36■■□□□ 1.33
TMED3-201ENST00000299705 HEG1Q9ULI3 1381 aa23.36■■□□□ 1.33
TMED3-201ENST00000299705 ZNF831Q5JPB2 1677 aa23.36■■□□□ 1.33
TMED3-201ENST00000299705 PTCD1O75127 700 aaKnown RBP23.36■■□□□ 1.33
TMED3-201ENST00000299705 LOC102724428A0A0B4J2F2 783 aa23.35■■□□□ 1.33
TMED3-201ENST00000299705 SIK1P57059 783 aa23.35■■□□□ 1.33
TMED3-201ENST00000299705 BAG6P46379 1132 aa23.34■■□□□ 1.33
TMED3-201ENST00000299705 DUSP27Q5VZP5 1158 aa23.34■■□□□ 1.33
TMED3-201ENST00000299705 RBM42Q9BTD8 480 aaKnown RBP23.34■■□□□ 1.33
TMED3-201ENST00000299705 CICQ96RK0 1608 aaPredicted RBP23.32■■□□□ 1.32
TMED3-201ENST00000299705 SNRPA1P09661 255 aaKnown RBP23.32■■□□□ 1.32
TMED3-201ENST00000299705 SLC27A3Q5K4L6 730 aa23.32■■□□□ 1.32
TMED3-201ENST00000299705 SLC4A9Q96Q91 983 aa23.32■■□□□ 1.32
TMED3-201ENST00000299705 GIGYF1O75420 1035 aaPredicted RBP23.31■■□□□ 1.32
TMED3-201ENST00000299705 SOS1Q07889 1333 aaPredicted RBP23.31■■□□□ 1.32
TMED3-201ENST00000299705 HOXB7P09629 217 aa23.3■■□□□ 1.32
TMED3-201ENST00000299705 HMGB2P26583 209 aaKnown RBP23.3■■□□□ 1.32
TMED3-201ENST00000299705 CAMKK2Q96RR4 588 aa23.3■■□□□ 1.32
TMED3-201ENST00000299705 TEX13AQ9BXU3 409 aaPredicted RBP23.3■■□□□ 1.32
TMED3-201ENST00000299705 ATP6V1AP38606 617 aa23.3■■□□□ 1.32
TMED3-201ENST00000299705 EXOSC9Q06265 439 aaKnown RBP23.3■■□□□ 1.32
TMED3-201ENST00000299705 TXNRD1Q16881 649 aa23.3■■□□□ 1.32
TMED3-201ENST00000299705 PROM2Q8N271 834 aa23.3■■□□□ 1.32
TMED3-201ENST00000299705 C8orf58Q8NAV2 365 aa23.3■■□□□ 1.32
TMED3-201ENST00000299705 CCNL1Q9UK58 526 aaPredicted RBP23.3■■□□□ 1.32
TMED3-201ENST00000299705 KRT24Q2M2I5 525 aa23.29■■□□□ 1.32
TMED3-201ENST00000299705 EN1Q05925 392 aaPredicted RBP23.28■■□□□ 1.32
TMED3-201ENST00000299705 TJP1Q07157 1748 aa23.28■■□□□ 1.32
TMED3-201ENST00000299705 ITPK1Q13572 414 aa23.26■■□□□ 1.31
TMED3-201ENST00000299705 DEFB132Q7Z7B7 95 aa23.26■■□□□ 1.31
TMED3-201ENST00000299705 TSPYL6Q8N831 410 aa23.26■■□□□ 1.31
TMED3-201ENST00000299705 LRRC4BQ9NT99 713 aa23.26■■□□□ 1.31
TMED3-201ENST00000299705 C5P01031 1676 aa23.25■■□□□ 1.31
TMED3-201ENST00000299705 PRAMEF22A3QJZ6 481 aa23.25■■□□□ 1.31
TMED3-201ENST00000299705 CT47B1P0C2W7 299 aaPredicted RBP23.25■■□□□ 1.31
TMED3-201ENST00000299705 EZH2Q15910 746 aaKnown RBP23.25■■□□□ 1.31
TMED3-201ENST00000299705 TWISTNBQ3B726 338 aaPredicted RBP23.25■■□□□ 1.31
TMED3-201ENST00000299705 DNAJC10Q8IXB1 793 aa23.25■■□□□ 1.31
TMED3-201ENST00000299705 CHMP4AQ9BY43 222 aa23.25■■□□□ 1.31
TMED3-201ENST00000299705 LAMB4A4D0S4 1761 aa23.25■■□□□ 1.31
TMED3-201ENST00000299705 USP16Q9Y5T5 823 aa23.24■■□□□ 1.31
TMED3-201ENST00000299705 COL5A3P25940 1745 aaPredicted RBP23.24■■□□□ 1.31
TMED3-201ENST00000299705 ELL2O00472 640 aaPredicted RBP23.24■■□□□ 1.31
TMED3-201ENST00000299705 VAMP4O75379 141 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms