RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 EYA1Q99502 592 aa13.01□□□□□ -0.33
UPF3B-201ENST00000276201 MTHFSP49914 203 aa13.01□□□□□ -0.33
UPF3B-201ENST00000276201 SHANK3Q9BYB0 1731 aa13□□□□□ -0.33
UPF3B-201ENST00000276201 CT47B1P0C2W7 299 aaPredicted RBP13□□□□□ -0.33
UPF3B-201ENST00000276201 RARSP54136 660 aaKnown RBP13□□□□□ -0.33
UPF3B-201ENST00000276201 BCL9O00512 1426 aa13□□□□□ -0.33
UPF3B-201ENST00000276201 CCDC146Q8IYE0 955 aa13□□□□□ -0.33
UPF3B-201ENST00000276201 TBC1D2Q9BYX2 928 aa13□□□□□ -0.33
UPF3B-201ENST00000276201 RWDD1Q9H446 243 aaPredicted RBP13□□□□□ -0.33
UPF3B-201ENST00000276201 RRAGDQ9NQL2 400 aaPredicted RBP13□□□□□ -0.33
UPF3B-201ENST00000276201 IGSF1Q8N6C5 1336 aa12.99□□□□□ -0.33
UPF3B-201ENST00000276201 TRIM37O94972 964 aa12.99□□□□□ -0.33
UPF3B-201ENST00000276201 CLCN1P35523 988 aa12.99□□□□□ -0.33
UPF3B-201ENST00000276201 RAPGEF4Q8WZA2 1011 aa12.99□□□□□ -0.33
UPF3B-201ENST00000276201 SBF2Q86WG5 1849 aa12.99□□□□□ -0.33
UPF3B-201ENST00000276201 MCM4P33991 863 aa12.99□□□□□ -0.33
UPF3B-201ENST00000276201 RUNDC1Q96C34 613 aa12.99□□□□□ -0.33
UPF3B-201ENST00000276201 TATP17735 454 aaPredicted RBP12.98□□□□□ -0.33
UPF3B-201ENST00000276201 DEFB132Q7Z7B7 95 aa12.98□□□□□ -0.33
UPF3B-201ENST00000276201 CHMP5Q9NZZ3 219 aa12.98□□□□□ -0.33
UPF3B-201ENST00000276201 GOLGA6L3A6NEY3 463 aa12.98□□□□□ -0.33
UPF3B-201ENST00000276201 IL13P35225 146 aa12.98□□□□□ -0.33
UPF3B-201ENST00000276201 SF3B2Q13435 895 aaKnown RBP12.98□□□□□ -0.33
UPF3B-201ENST00000276201 ZCRB1Q8TBF4 217 aaKnown RBP12.98□□□□□ -0.33
UPF3B-201ENST00000276201 COG6Q9Y2V7 657 aa12.98□□□□□ -0.33
UPF3B-201ENST00000276201 COL3A1P02461 1466 aaPredicted RBP12.97□□□□□ -0.33
UPF3B-201ENST00000276201 PKD1L3Q7Z443 1732 aa12.97□□□□□ -0.33
UPF3B-201ENST00000276201 PDZRN3Q9UPQ7 1066 aa12.97□□□□□ -0.33
UPF3B-201ENST00000276201 DDX54Q8TDD1 881 aaKnown RBP12.96□□□□□ -0.33
UPF3B-201ENST00000276201 PANK1Q8TE04 598 aa12.96□□□□□ -0.33
UPF3B-201ENST00000276201 XRCC6P12956 609 aaKnown RBP eCLIP12.96□□□□□ -0.33
UPF3B-201ENST00000276201 CANXP27824 592 aaKnown RBP12.96□□□□□ -0.33
UPF3B-201ENST00000276201 PTF1AQ7RTS3 328 aa12.96□□□□□ -0.33
UPF3B-201ENST00000276201 MRE11P49959 708 aa12.95□□□□□ -0.34
UPF3B-201ENST00000276201 PCDHB15Q9Y5E8 787 aa12.95□□□□□ -0.34
UPF3B-201ENST00000276201 NHSQ6T4R5 1651 aa12.95□□□□□ -0.34
UPF3B-201ENST00000276201 EIF5BO60841 1220 aaKnown RBP12.95□□□□□ -0.34
UPF3B-201ENST00000276201 BAG6P46379 1132 aa12.95□□□□□ -0.34
UPF3B-201ENST00000276201 AEBP1Q8IUX7 1158 aa12.95□□□□□ -0.34
UPF3B-201ENST00000276201 DDX11L8A8MPP1 907 aa12.94□□□□□ -0.34
UPF3B-201ENST00000276201 PTMSP20962 102 aa12.94□□□□□ -0.34
UPF3B-201ENST00000276201 APBA3O96018 575 aa12.94□□□□□ -0.34
UPF3B-201ENST00000276201 HDAC1Q13547 482 aaPredicted RBP12.94□□□□□ -0.34
UPF3B-201ENST00000276201 BCL11BQ9C0K0 894 aaPredicted RBP12.94□□□□□ -0.34
UPF3B-201ENST00000276201 SLKQ9H2G2 1235 aaPredicted RBP12.94□□□□□ -0.34
UPF3B-201ENST00000276201 KDRP35968 1356 aa12.93□□□□□ -0.34
UPF3B-201ENST00000276201 DIAPH1O60610 1272 aaKnown RBP12.93□□□□□ -0.34
UPF3B-201ENST00000276201 EN1Q05925 392 aaPredicted RBP12.93□□□□□ -0.34
UPF3B-201ENST00000276201 ACSBG1Q96GR2 724 aa12.93□□□□□ -0.34
UPF3B-201ENST00000276201 CIZ1Q9ULV3 898 aaPredicted RBP12.93□□□□□ -0.34
UPF3B-201ENST00000276201 PCDH11XQ9BZA7 1347 aa12.93□□□□□ -0.34
UPF3B-201ENST00000276201 PCDH11YQ9BZA8 1340 aa12.93□□□□□ -0.34
UPF3B-201ENST00000276201 KCNQ2O43526 872 aa12.93□□□□□ -0.34
UPF3B-201ENST00000276201 DDIT3P35638 169 aa12.93□□□□□ -0.34
UPF3B-201ENST00000276201 MVPQ14764 893 aaKnown RBP12.93□□□□□ -0.34
UPF3B-201ENST00000276201 SNX21Q969T3 373 aa12.93□□□□□ -0.34
UPF3B-201ENST00000276201 DOT1LQ8TEK3 1739 aa12.92□□□□□ -0.34
UPF3B-201ENST00000276201 PLEKHG2Q9H7P9 1386 aa12.92□□□□□ -0.34
UPF3B-201ENST00000276201 CYP27B1O15528 508 aa12.92□□□□□ -0.34
UPF3B-201ENST00000276201 SULT6B1Q6IMI4 303 aa12.92□□□□□ -0.34
UPF3B-201ENST00000276201 MYH16Q9H6N6 1097 aa12.92□□□□□ -0.34
UPF3B-201ENST00000276201 CAMKK2Q96RR4 588 aa12.92□□□□□ -0.34
UPF3B-201ENST00000276201 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.92□□□□□ -0.34
UPF3B-201ENST00000276201 SPG7Q9UQ90 795 aa12.92□□□□□ -0.34
UPF3B-201ENST00000276201 GLIPR1L2Q4G1C9 344 aa12.91□□□□□ -0.34
UPF3B-201ENST00000276201 RLBP1P12271 317 aa12.91□□□□□ -0.34
UPF3B-201ENST00000276201 EZH2Q15910 746 aaKnown RBP12.91□□□□□ -0.34
UPF3B-201ENST00000276201 C22orf23Q9BZE7 217 aa12.91□□□□□ -0.34
UPF3B-201ENST00000276201 RREB1Q92766 1687 aa12.9□□□□□ -0.34
UPF3B-201ENST00000276201 TRAK2O60296 914 aa12.9□□□□□ -0.34
UPF3B-201ENST00000276201 CFAP53Q96M91 514 aa12.9□□□□□ -0.34
UPF3B-201ENST00000276201 RGPD3A6NKT7 1758 aaPredicted RBP12.9□□□□□ -0.34
UPF3B-201ENST00000276201 RGPD4Q7Z3J3 1758 aa12.9□□□□□ -0.34
UPF3B-201ENST00000276201 BTAF1O14981 1849 aa12.9□□□□□ -0.34
UPF3B-201ENST00000276201 TOGARAM1Q9Y4F4 1720 aa12.9□□□□□ -0.35
UPF3B-201ENST00000276201 RRP9O43818 475 aaKnown RBP12.89□□□□□ -0.35
UPF3B-201ENST00000276201 HMOX1P09601 288 aa12.89□□□□□ -0.35
UPF3B-201ENST00000276201 PNNQ9H307 717 aaKnown RBP12.89□□□□□ -0.35
UPF3B-201ENST00000276201 RBM25P49756 843 aaKnown RBP12.89□□□□□ -0.35
UPF3B-201ENST00000276201 ZKSCAN2Q63HK3 967 aa12.89□□□□□ -0.35
UPF3B-201ENST00000276201 KAT6BQ8WYB5 2073 aa12.89□□□□□ -0.35
UPF3B-201ENST00000276201 PRIM1P49642 420 aaKnown RBP12.88□□□□□ -0.35
UPF3B-201ENST00000276201 SMC5Q8IY18 1101 aa12.88□□□□□ -0.35
UPF3B-201ENST00000276201 IL16Q14005 1332 aa12.88□□□□□ -0.35
UPF3B-201ENST00000276201 U2SURPO15042 1029 aaKnown RBP12.88□□□□□ -0.35
UPF3B-201ENST00000276201 PHKG2P15735 406 aa12.88□□□□□ -0.35
UPF3B-201ENST00000276201 PLEKHO1Q53GL0 409 aaPredicted RBP12.88□□□□□ -0.35
UPF3B-201ENST00000276201 NUP188Q5SRE5 1749 aa12.88□□□□□ -0.35
UPF3B-201ENST00000276201 PLSCR1O15162 318 aa12.87□□□□□ -0.35
UPF3B-201ENST00000276201 NKX1-1Q15270 411 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-201ENST00000276201 SKOR2Q2VWA4 1001 aaPredicted RBP12.87□□□□□ -0.35
UPF3B-201ENST00000276201 DZIP1LQ8IYY4 767 aaKnown RBP12.87□□□□□ -0.35
UPF3B-201ENST00000276201 IFNL2Q8IZJ0 200 aa12.87□□□□□ -0.35
UPF3B-201ENST00000276201 AMOTQ4VCS5 1084 aa12.86□□□□□ -0.35
UPF3B-201ENST00000276201 ZNF530Q6P9A1 599 aaPredicted RBP12.86□□□□□ -0.35
UPF3B-201ENST00000276201 HSCBQ8IWL3 235 aa12.86□□□□□ -0.35
UPF3B-201ENST00000276201 SYTL4Q96C24 671 aaPredicted RBP12.86□□□□□ -0.35
UPF3B-201ENST00000276201 KIF16BQ96L93 1317 aa12.86□□□□□ -0.35
UPF3B-201ENST00000276201 GRPEL1Q9HAV7 217 aa12.86□□□□□ -0.35
UPF3B-201ENST00000276201 DDX19BQ9UMR2 479 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms