RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 CCT4P50991 539 aaKnown RBP27.55■■■□□ 2
CCDC9-201ENST00000221922 EIF5BO60841 1220 aaKnown RBP27.55■■■□□ 2
CCDC9-201ENST00000221922 ATF3P18847 181 aa27.55■■■□□ 2
CCDC9-201ENST00000221922 CEP85Q6P2H3 762 aa27.55■■■□□ 2
CCDC9-201ENST00000221922 CCDC30Q5VVM6 783 aa27.54■■■□□ 2
CCDC9-201ENST00000221922 KDM3BQ7LBC6 1761 aa27.53■■■□□ 2
CCDC9-201ENST00000221922 LMOD2Q6P5Q4 547 aa27.53■■■□□ 2
CCDC9-201ENST00000221922 LRRC59Q96AG4 307 aaKnown RBP27.52■■■□□ 2
CCDC9-201ENST00000221922 G2E3Q7L622 706 aa27.52■■■□□ 2
CCDC9-201ENST00000221922 N4BP2Q86UW6 1770 aaPredicted RBP27.52■■■□□ 2
CCDC9-201ENST00000221922 MEIS3Q99687 375 aa27.51■■□□□ 1.99
CCDC9-201ENST00000221922 AMOTQ4VCS5 1084 aa27.5■■□□□ 1.99
CCDC9-201ENST00000221922 PLEKHO1Q53GL0 409 aaPredicted RBP27.5■■□□□ 1.99
CCDC9-201ENST00000221922 ANKRD24Q8TF21 1146 aa27.5■■□□□ 1.99
CCDC9-201ENST00000221922 KIF2CQ99661 725 aa27.5■■□□□ 1.99
CCDC9-201ENST00000221922 HMMRO75330 724 aa27.5■■□□□ 1.99
CCDC9-201ENST00000221922 OVOS2A0A0G2JMS6 1433 aa27.49■■□□□ 1.99
CCDC9-201ENST00000221922 AKAP4Q5JQC9 854 aa27.49■■□□□ 1.99
CCDC9-201ENST00000221922 TBC1D9Q6ZT07 1266 aa27.48■■□□□ 1.99
CCDC9-201ENST00000221922 PLEKHM2Q8IWE5 1019 aa27.48■■□□□ 1.99
CCDC9-201ENST00000221922 FAM43AQ8N2R8 423 aa27.48■■□□□ 1.99
CCDC9-201ENST00000221922 LMTK3Q96Q04 1460 aa27.48■■□□□ 1.99
CCDC9-201ENST00000221922 FSD2A1L4K1 749 aa27.48■■□□□ 1.99
CCDC9-201ENST00000221922 CDC45O75419 566 aa27.48■■□□□ 1.99
CCDC9-201ENST00000221922 RGPD5Q99666 1765 aa27.48■■□□□ 1.99
CCDC9-201ENST00000221922 CIZ1Q9ULV3 898 aaPredicted RBP27.47■■□□□ 1.99
CCDC9-201ENST00000221922 ZNF530Q6P9A1 599 aaPredicted RBP27.47■■□□□ 1.99
CCDC9-201ENST00000221922 FLIIQ13045 1269 aa27.46■■□□□ 1.99
CCDC9-201ENST00000221922 SLC4A10Q6U841 1118 aa27.46■■□□□ 1.99
CCDC9-201ENST00000221922 CADPS2Q86UW7 1296 aa27.46■■□□□ 1.99
CCDC9-201ENST00000221922 TRAK2O60296 914 aa27.45■■□□□ 1.99
CCDC9-201ENST00000221922 PXDNLA1KZ92 1463 aa27.45■■□□□ 1.98
CCDC9-201ENST00000221922 DDX11L8A8MPP1 907 aa27.45■■□□□ 1.98
CCDC9-201ENST00000221922 PXDNQ92626 1479 aa27.44■■□□□ 1.98
CCDC9-201ENST00000221922 LGR6Q9HBX8 967 aa27.44■■□□□ 1.98
CCDC9-201ENST00000221922 AXIN2Q9Y2T1 843 aa27.44■■□□□ 1.98
CCDC9-201ENST00000221922 F6X3S4 739 aa27.44■■□□□ 1.98
CCDC9-201ENST00000221922 HOXB7P09629 217 aa27.44■■□□□ 1.98
CCDC9-201ENST00000221922 TTC22Q5TAA0 569 aa27.44■■□□□ 1.98
CCDC9-201ENST00000221922 NPHP3Q7Z494 1330 aa27.43■■□□□ 1.98
CCDC9-201ENST00000221922 ERBB3P21860 1342 aa27.42■■□□□ 1.98
CCDC9-201ENST00000221922 ABCC6O95255 1503 aa27.42■■□□□ 1.98
CCDC9-201ENST00000221922 XIRP1Q702N8 1843 aaKnown RBP27.42■■□□□ 1.98
CCDC9-201ENST00000221922 ADAMTS7Q9UKP4 1686 aa27.42■■□□□ 1.98
CCDC9-201ENST00000221922 GOLGA6L3A6NEY3 463 aa27.42■■□□□ 1.98
CCDC9-201ENST00000221922 GNAI2P04899 355 aa27.42■■□□□ 1.98
CCDC9-201ENST00000221922 GSPT1P15170 499 aaKnown RBP27.42■■□□□ 1.98
CCDC9-201ENST00000221922 TNS3Q68CZ2 1445 aa27.41■■□□□ 1.98
CCDC9-201ENST00000221922 EIF4A1P60842 406 aaKnown RBP27.41■■□□□ 1.98
CCDC9-201ENST00000221922 FKBP5Q13451 457 aaPredicted RBP27.41■■□□□ 1.98
CCDC9-201ENST00000221922 CHMP4AQ9BY43 222 aa27.41■■□□□ 1.98
CCDC9-201ENST00000221922 PLEKHG5O94827 1062 aa27.4■■□□□ 1.98
CCDC9-201ENST00000221922 HSP90AB1P08238 724 aaKnown RBP27.4■■□□□ 1.98
CCDC9-201ENST00000221922 GNAI3P08754 354 aa27.4■■□□□ 1.98
CCDC9-201ENST00000221922 COL18A1P39060 1754 aa27.4■■□□□ 1.98
CCDC9-201ENST00000221922 CRYBG1Q9Y4K1 1723 aa27.4■■□□□ 1.98
CCDC9-201ENST00000221922 TEFQ10587 303 aa27.4■■□□□ 1.98
CCDC9-201ENST00000221922 C1orf141Q5JVX7 400 aa27.4■■□□□ 1.98
CCDC9-201ENST00000221922 HDGFL1Q5TGJ6 251 aa27.4■■□□□ 1.98
CCDC9-201ENST00000221922 HSPA2P54652 639 aa27.39■■□□□ 1.98
CCDC9-201ENST00000221922 SIPA1L3O60292 1781 aaPredicted RBP27.39■■□□□ 1.97
CCDC9-201ENST00000221922 RNMTO43148 476 aaKnown RBP27.38■■□□□ 1.97
CCDC9-201ENST00000221922 XRCC6P12956 609 aaKnown RBP eCLIP27.38■■□□□ 1.97
CCDC9-201ENST00000221922 ZC3H6P61129 1189 aaKnown RBP27.37■■□□□ 1.97
CCDC9-201ENST00000221922 RAB3GAP1Q15042 981 aa27.37■■□□□ 1.97
CCDC9-201ENST00000221922 NECTIN2Q92692 538 aa27.37■■□□□ 1.97
CCDC9-201ENST00000221922 TNPO1Q92973 898 aaKnown RBP27.37■■□□□ 1.97
CCDC9-201ENST00000221922 MPRIPQ6WCQ1 1025 aa27.36■■□□□ 1.97
CCDC9-201ENST00000221922 C16orf71Q8IYS4 520 aaPredicted RBP27.36■■□□□ 1.97
CCDC9-201ENST00000221922 ANO8Q9HCE9 1232 aaPredicted RBP27.36■■□□□ 1.97
CCDC9-201ENST00000221922 K7ELQ4 463 aaPredicted RBP27.36■■□□□ 1.97
CCDC9-201ENST00000221922 CD2BP2O95400 341 aaKnown RBP27.36■■□□□ 1.97
CCDC9-201ENST00000221922 GZF1Q9H116 711 aaPredicted RBP27.36■■□□□ 1.97
CCDC9-201ENST00000221922 BTBD11A6QL63 1104 aa27.35■■□□□ 1.97
CCDC9-201ENST00000221922 DDX17Q92841 729 aaKnown RBP27.35■■□□□ 1.97
CCDC9-201ENST00000221922 PLEKHG2Q9H7P9 1386 aa27.34■■□□□ 1.97
CCDC9-201ENST00000221922 STRCQ7RTU9 1775 aa27.34■■□□□ 1.97
CCDC9-201ENST00000221922 CASC1Q6TDU7 716 aa27.34■■□□□ 1.97
CCDC9-201ENST00000221922 SMARCA5O60264 1052 aaPredicted RBP27.32■■□□□ 1.96
CCDC9-201ENST00000221922 SPATA31A3Q5VYP0 1347 aa27.32■■□□□ 1.96
CCDC9-201ENST00000221922 GBP4Q96PP9 640 aa27.32■■□□□ 1.96
CCDC9-201ENST00000221922 OTUD7AQ8TE49 926 aaPredicted RBP27.31■■□□□ 1.96
CCDC9-201ENST00000221922 ISY1Q9ULR0 285 aaKnown RBP27.31■■□□□ 1.96
CCDC9-201ENST00000221922 APBB1O00213 710 aa27.31■■□□□ 1.96
CCDC9-201ENST00000221922 OSBPL3Q9H4L5 887 aa27.31■■□□□ 1.96
CCDC9-201ENST00000221922 KCNQ3O43525 872 aa27.3■■□□□ 1.96
CCDC9-201ENST00000221922 RBM42Q9BTD8 480 aaKnown RBP27.3■■□□□ 1.96
CCDC9-201ENST00000221922 HEG1Q9ULI3 1381 aa27.3■■□□□ 1.96
CCDC9-201ENST00000221922 ATP8B2P98198 1209 aa27.29■■□□□ 1.96
CCDC9-201ENST00000221922 CPDO75976 1380 aa27.29■■□□□ 1.96
CCDC9-201ENST00000221922 MRE11P49959 708 aa27.29■■□□□ 1.96
CCDC9-201ENST00000221922 SDSP20132 328 aa27.28■■□□□ 1.96
CCDC9-201ENST00000221922 PTMSP20962 102 aa27.28■■□□□ 1.96
CCDC9-201ENST00000221922 RAPGEF4Q8WZA2 1011 aa27.28■■□□□ 1.96
CCDC9-201ENST00000221922 PHAXQ9H814 394 aaKnown RBP27.28■■□□□ 1.96
CCDC9-201ENST00000221922 SCN11AQ9UI33 1791 aa27.28■■□□□ 1.96
CCDC9-201ENST00000221922 HSP90AA1P07900 732 aaKnown RBP27.27■■□□□ 1.96
CCDC9-201ENST00000221922 EIF2S2P20042 333 aaKnown RBP27.27■■□□□ 1.96
CCDC9-201ENST00000221922 RABEP1Q15276 862 aa27.26■■□□□ 1.95
CCDC9-201ENST00000221922 NLRP2Q9NX02 1062 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms